Rw4G017240

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007724
Physical Location & Seq
Reverse (-)
38815187 .. 38819826
4640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017240.1

Sequence Viewer

Length: 1095 bp
ATGAAACAAATTCTCTCGAGCTCTCTCAGTTGTGAAACCCCCGTCTCTCCACCACCCCTCCCCATGACTCTCCCAATCGTGAAACCCAACCCCCCCCCCCCCACGAAACCCCTCTCTCTCATACTCTGTCTAGACTTTATCAAATGTGACTTTATCAAAGTTCTTGATCGGTTTACCTTGGCCATTTCCTACTGTCTAGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCCGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTACAGGTTGATAATTTTATCCACAAAATGTTTATGTTTGATTTTTGTAGTCCTTTAAATGTGATAAGTGTTGGTTCATTTGATGATCTTCTTTTTCATATTTCTTTTTCCAATAGGTGCATGGCTGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAATTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCCGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGATAGGATTGGTTGAGTGGCACAATGAACATTTTATTGATAGACGATCTTGCTTTTATTTTGGTTATACCTACCTTTGCTCTAATTCACCACCTCTTTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

364

Amino Acids

41.72

Weight (kDa)

5.09

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 55 - 328 4.5e-31 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 577, 585
AccII CGCG 1 cut(s) 450
AciI CCGC 4 cut(s) 230, 448, 900, 962
AclI AACGTT 1 cut(s) 890
AclWI GGATC 2 cut(s) 308, 860
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 3 cut(s) 9, 455, 536
AcuI CTGAAG 1 cut(s) 291
AgsI TTSAA 7 cut(s) 386, 440, 461, 761, 773, 842, 980
AjnI CCWGG 2 cut(s) 590, 921
AluBI AGCT 4 cut(s) 21, 370, 863, 968
AluI AGCT 4 cut(s) 21, 370, 863, 968
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 4 cut(s) 49, 327, 351, 758
AlwI GGATC 2 cut(s) 308, 860
Ama87I CYCGRG 2 cut(s) 16, 581
AoxI GGCC 2 cut(s) 180, 408
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 3 cut(s) 9, 455, 536
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 819
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 2 cut(s) 582, 583
AsuHPI GGTGA 2 cut(s) 320, 1068
AvaI CYCGRG 2 cut(s) 16, 581
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 3 cut(s) 549, 582, 590
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 2 cut(s) 577, 585
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 856
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 379
BceAI ACGGC 1 cut(s) 821
BciT130I CCWGG 2 cut(s) 592, 923
BciVI GTATCC 1 cut(s) 246
BcnI CCSGG 2 cut(s) 582, 583
BcoDI GTCTC 4 cut(s) 49, 327, 351, 758
BfaI CTAG 4 cut(s) 131, 197, 551, 896
BfmI CTRYAG 1 cut(s) 969
BfoI RGCGCY 1 cut(s) 820
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 2 cut(s) 368, 900
BlsI GCNGC 2 cut(s) 369, 901
Bme1390I CCNGG 4 cut(s) 582, 583, 592, 923
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 2 cut(s) 16, 581
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 579, 587
BmrFI CCNGG 4 cut(s) 582, 583, 592, 923
BmsI GCATC 2 cut(s) 217, 486
BpiI GAAGAC 1 cut(s) 856
BpmI CTGGAG 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 582, 583
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 177, 581, 590
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse1I ACTGG 1 cut(s) 854
BseBI CCWGG 2 cut(s) 592, 923
BseDI CCNNGG 3 cut(s) 177, 581, 590
BseGI GGATG 1 cut(s) 220
BseMII CTCAG 3 cut(s) 40, 383, 959
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 3 cut(s) 549, 582, 590
BseXI GCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 182, 410
BshNI GGYRCC 2 cut(s) 577, 585
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 2 cut(s) 16, 581
BsiSI CCGG 1 cut(s) 582
BsmAI GTCTC 4 cut(s) 49, 327, 351, 758
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 182, 410
Bso31I GGTCTC 1 cut(s) 351
BsoBI CYCGRG 2 cut(s) 16, 581
Bsp1286I GDGCHC 4 cut(s) 23, 549, 582, 590
Bsp143I GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
BspACI CCGC 4 cut(s) 230, 448, 900, 962
BspANI GGCC 2 cut(s) 182, 410
BspCNI CTCAG 3 cut(s) 39, 384, 958
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 579, 587
BspPI GGATC 2 cut(s) 308, 860
BspT107I GGYRCC 2 cut(s) 577, 585
BspTNI GGTCTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 854
BssECI CCNNGG 3 cut(s) 177, 581, 590
BssMI GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 592, 923
Bst4CI ACNGT 2 cut(s) 194, 335
Bst6I CTCTTC 1 cut(s) 756
BstAPI GCANNNNNTGC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 966
BstDEI CTNAG 3 cut(s) 26, 392, 945
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 450
BstH2I RGCGCY 1 cut(s) 820
BstHHI GCGC 1 cut(s) 819
BstKTI GATC 7 cut(s) 169, 316, 400, 703, 868, 873, 1037
BstMAI GTCTC 4 cut(s) 49, 327, 351, 758
BstMBI GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 2 cut(s) 592, 923
BstSCI CCNGG 4 cut(s) 580, 581, 590, 921
BstSFI CTRYAG 1 cut(s) 969
BstSLI GKGCMC 3 cut(s) 549, 582, 590
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 856
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 182, 410
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 549, 861
Cac8I GCNNGC 1 cut(s) 966
CfoI GCGC 1 cut(s) 819
Cfr13I GGNCC 1 cut(s) 266
Cfr9I CCCGGG 1 cut(s) 581
CspCI CAANNNNNGTGG 1 cut(s) 1068
CviAII CATG 6 cut(s) 64, 305, 328, 373, 406, 736
DdeI CTNAG 3 cut(s) 26, 392, 945
DpnI GATC 7 cut(s) 168, 315, 399, 702, 867, 872, 1036
DpnII GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
DraI TTTAAA 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 2 cut(s) 16, 581
EcoICRI GAGCTC 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 590, 921
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 6 cut(s) 67, 308, 331, 376, 409, 739
FalI AAGNNNNNCTT 4 cut(s) 599, 631, 753, 785
FatI CATG 6 cut(s) 63, 304, 327, 372, 405, 735
Fnu4HI GCNGC 2 cut(s) 368, 900
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 368, 900
FspBI CTAG 4 cut(s) 131, 197, 551, 896
GlaI GCGC 1 cut(s) 818
GluI GCNGC 2 cut(s) 368, 900
GsuI CTGGAG 1 cut(s) 927
HaeII RGCGCY 1 cut(s) 820
HaeIII GGCC 2 cut(s) 182, 410
HapII CCGG 1 cut(s) 582
HhaI GCGC 1 cut(s) 819
Hin1II CATG 6 cut(s) 67, 308, 331, 376, 409, 739
Hin6I GCGC 1 cut(s) 817
HinP1I GCGC 1 cut(s) 817
HinfI GANTC 2 cut(s) 67, 766
HpaII CCGG 1 cut(s) 582
HphI GGTGA 2 cut(s) 320, 1068
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 4 cut(s) 240, 266, 318, 870
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 807
HpyCH4III ACNGT 2 cut(s) 194, 335
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 6 cut(s) 248, 304, 499, 542, 735, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 3 cut(s) 26, 392, 945
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 6 cut(s) 67, 308, 331, 376, 409, 739
HspAI GCGC 1 cut(s) 817
Kzo9I GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 217, 486
MaeI CTAG 4 cut(s) 131, 197, 551, 896
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 1 cut(s) 146
MalI GATC 7 cut(s) 168, 315, 399, 702, 867, 872, 1036
MboI GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
MboII GAAGA 6 cut(s) 284, 323, 619, 695, 773, 861
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 4 cut(s) 23, 549, 582, 590
MlsI TGGCCA 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 2 cut(s) 61, 760
MmeI TCCRAC 1 cut(s) 409
Mox20I TGGCCA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 282
MscI TGGCCA 1 cut(s) 182
MseI TTAA 3 cut(s) 671, 800, 932
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 4 cut(s) 582, 583, 592, 923
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 2 cut(s) 592, 923
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 373
NciI CCSGG 2 cut(s) 582, 583
NdeII GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
NlaIII CATG 6 cut(s) 67, 308, 331, 376, 409, 739
NlaIV GGNNCC 2 cut(s) 579, 587
NmuCI GTSAC 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 369, 901
PleI GAGTC 2 cut(s) 61, 760
PpsI GAGTC 2 cut(s) 61, 760
Psp124BI GAGCTC 1 cut(s) 23
Psp1406I AACGTT 1 cut(s) 890
Psp6I CCWGG 2 cut(s) 590, 921
PspGI CCWGG 2 cut(s) 590, 921
PspN4I GGNNCC 2 cut(s) 579, 587
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 313
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 671, 800, 932
SatI GCNGC 2 cut(s) 368, 900
Sau3AI GATC 7 cut(s) 166, 313, 397, 700, 865, 870, 1034
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 61, 760
ScrFI CCNGG 4 cut(s) 582, 583, 592, 923
SduI GDGCHC 4 cut(s) 23, 549, 582, 590
SfaNI GCATC 2 cut(s) 217, 486
SfcI CTRYAG 1 cut(s) 969
Sfr274I CTCGAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 16
SmaI CCCGGG 1 cut(s) 583
SmlI CTYRAG 2 cut(s) 16, 502
SmoI CTYRAG 2 cut(s) 16, 502
SsiI CCGC 4 cut(s) 230, 448, 900, 962
SspMI CTAG 4 cut(s) 131, 197, 551, 896
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 4 cut(s) 580, 581, 590, 921
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 194, 335
TaiI ACGT 1 cut(s) 893
TaqI TCGA 1 cut(s) 17
TauI GCSGC 1 cut(s) 902
Tru1I TTAA 3 cut(s) 671, 800, 932
Tru9I TTAA 3 cut(s) 671, 800, 932
TscAI CASTG 2 cut(s) 549, 861
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 8 cut(s) 17, 291, 344, 434, 681, 701, 917, 1029
TspMI CCCGGG 1 cut(s) 581
TspRI CASTG 2 cut(s) 549, 861
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 3 cut(s) 9, 455, 536
XbaI TCTAGA 2 cut(s) 130, 196
XcmI CCANNNNNNNNNTGG 2 cut(s) 334, 733
XhoI CTCGAG 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 4 cut(s) 131, 197, 551, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.