Rw6G037420

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007724
Physical Location & Seq
Reverse (-)
61728242 .. 61731397
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037420.1

Sequence Viewer

Length: 1149 bp
ATGTCTTCAGAGAGCTCTCCTCCTCTGATTGCAGCTCAGCTCAATCACCTCGCTCTTCACTTCCCTCTGCTCGCTAAGATTGAGGCTAAGTGGTCTGGTAGCAAAGACTACAGCGGAGTTCTTGATCGGTTTACCTTGGCCATTTCCTACTGTCTAGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCGGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGACGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCTAATATGATAAGGTATTTGCAATTGAAAAAAGAATATCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATATGTTTCCACCCCATCAGCTCCTCGTTTGAAACTAGTAGCTACACCAGACTTGAAGACACTATTTTCTATAGATGATGTCAAACTTCCTACATGGTTGACAGGGATGTGCATGGCTGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGCATTTCAACCCCCAAGGTGTGCCTATCAAATCACTGCCACTGACTGATTATCCATTTAGCCCAAGATGGGAAGCATCGCTAATGGCTGAACGAATAGGGGACTTTTTGGCCGATGAAGCCTTGATCTTCAAGAAGTACTGCAACGAGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

382

Amino Acids

43.69

Weight (kDa)

5.33

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 33 - 333 7.8e-35 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 2 cut(s) 559, 567
AccII CGCG 1 cut(s) 408
AciI CCGC 4 cut(s) 114, 188, 406, 965
AclI AACGTT 1 cut(s) 893
AclWI GGATC 2 cut(s) 266, 863
AcoI YGGCCR 2 cut(s) 138, 1101
AcsI RAATTY 2 cut(s) 413, 518
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 1130
AfiI CCNNNNNNNGG 1 cut(s) 1060
AhlI ACTAGT 1 cut(s) 661
AjnI CCWGG 2 cut(s) 572, 924
AluBI AGCT 9 cut(s) 15, 35, 40, 328, 647, 668, 866, 902, 971
AluI AGCT 9 cut(s) 15, 35, 40, 328, 647, 668, 866, 902, 971
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 285, 309, 761
AlwI GGATC 2 cut(s) 266, 863
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 3 cut(s) 138, 366, 1101
ApeKI GCWGC 3 cut(s) 32, 325, 902
ApoI RAATTY 2 cut(s) 413, 518
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 564, 565
AsuHPI GGTGA 2 cut(s) 38, 278
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 3 cut(s) 531, 564, 572
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 2 cut(s) 559, 567
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 689, 859
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 44, 337, 889
BccI CCATC 2 cut(s) 649, 1053
BceAI ACGGC 1 cut(s) 824
BciT130I CCWGG 2 cut(s) 574, 926
BciVI GTATCC 1 cut(s) 204
BcnI CCSGG 2 cut(s) 564, 565
BcoDI GTCTC 3 cut(s) 285, 309, 761
BcuI ACTAGT 1 cut(s) 661
BfaI CTAG 4 cut(s) 155, 533, 662, 899
BfmI CTRYAG 3 cut(s) 109, 696, 972
BfoI RGCGCY 1 cut(s) 823
BfuAI ACCTGC 1 cut(s) 592
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 3 cut(s) 33, 326, 903
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 3 cut(s) 34, 327, 904
BmcAI AGTACT 1 cut(s) 1130
Bme1390I CCNGG 4 cut(s) 564, 565, 574, 926
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 561, 569
BmrFI CCNGG 4 cut(s) 564, 565, 574, 926
BmsI GCATC 3 cut(s) 175, 444, 1076
BpiI GAAGAC 2 cut(s) 689, 859
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 930
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 2 cut(s) 564, 565
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 135, 563, 572, 1006
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 1060
Bse1I ACTGG 1 cut(s) 857
BseBI CCWGG 2 cut(s) 574, 926
BseDI CCNNGG 4 cut(s) 135, 563, 572, 1006
BseGI GGATG 2 cut(s) 178, 738
BseLI CCNNNNNNNGG 1 cut(s) 1060
BseMII CTCAG 3 cut(s) 50, 341, 962
BseNI ACTGG 1 cut(s) 857
BseRI GAGGAG 4 cut(s) 9, 12, 524, 639
BseSI GKGCMC 3 cut(s) 531, 564, 572
BseXI GCAGC 3 cut(s) 44, 337, 889
BseYI CCCAGC 1 cut(s) 990
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 3 cut(s) 140, 368, 1103
BshNI GGYRCC 2 cut(s) 559, 567
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 2 cut(s) 209, 564
BslFI GGGAC 1 cut(s) 1106
BslI CCNNNNNNNGG 1 cut(s) 1060
BsmAI GTCTC 3 cut(s) 285, 309, 761
BsmFI GGGAC 1 cut(s) 1106
BsnI GGCC 3 cut(s) 140, 368, 1103
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 4 cut(s) 17, 531, 564, 572
Bsp143I GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 4 cut(s) 114, 188, 406, 965
BspANI GGCC 3 cut(s) 140, 368, 1103
BspCNI CTCAG 3 cut(s) 49, 342, 961
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 561, 569
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 266, 863
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 559, 567
BspTNI GGTCTC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 857
BssECI CCNNGG 4 cut(s) 135, 563, 572, 1006
BssMI GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
BssT1I CCWWGG 2 cut(s) 135, 1006
Bst2UI CCWGG 2 cut(s) 574, 926
Bst4CI ACNGT 2 cut(s) 152, 293
Bst6I CTCTTC 2 cut(s) 60, 759
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 72, 969
BstDEI CTNAG 5 cut(s) 36, 75, 87, 350, 948
BstF5I GGATG 2 cut(s) 178, 738
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 823
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 6 cut(s) 127, 274, 358, 871, 876, 1119
BstMAI GTCTC 3 cut(s) 285, 309, 761
BstMBI GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
BstMWI GCNNNNNNNGC 2 cut(s) 331, 1109
BstNI CCWGG 2 cut(s) 574, 926
BstSCI CCNGG 4 cut(s) 562, 563, 572, 924
BstSFI CTRYAG 3 cut(s) 109, 696, 972
BstSLI GKGCMC 3 cut(s) 531, 564, 572
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 44, 337, 889
BstV2I GAAGAC 2 cut(s) 689, 859
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 140, 368, 1103
BtgZI GCGATG 1 cut(s) 1053
BtsCI GGATG 2 cut(s) 178, 738
BtsI GCAGTG 2 cut(s) 531, 1025
BtsIMutI CAGTG 4 cut(s) 531, 864, 1025, 1031
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 2 cut(s) 72, 969
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 224
Cfr9I CCCGGG 1 cut(s) 563
Csp6I GTAC 1 cut(s) 1129
CviAII CATG 6 cut(s) 263, 286, 331, 364, 720, 739
CviQI GTAC 1 cut(s) 1129
DdeI CTNAG 5 cut(s) 36, 75, 87, 350, 948
DpnI GATC 6 cut(s) 126, 273, 357, 870, 875, 1118
DpnII GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
EaeI YGGCCR 2 cut(s) 138, 1101
Eam1104I CTCTTC 2 cut(s) 60, 759
EarI CTCTTC 2 cut(s) 60, 759
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 135, 1006
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 572, 924
EcoT14I CCWWGG 2 cut(s) 135, 1006
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 135, 1006
FaeI CATG 6 cut(s) 266, 289, 334, 367, 723, 742
FalI AAGNNNNNCTT 4 cut(s) 581, 613, 756, 788
FaqI GGGAC 1 cut(s) 1106
FatI CATG 6 cut(s) 262, 285, 330, 363, 719, 738
Fnu4HI GCNGC 3 cut(s) 33, 326, 903
FokI GGATG 2 cut(s) 185, 745
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 33, 326, 903
FspBI CTAG 4 cut(s) 155, 533, 662, 899
GlaI GCGC 1 cut(s) 821
GluI GCNGC 3 cut(s) 33, 326, 903
GsaI CCCAGC 1 cut(s) 994
GsuI CTGGAG 1 cut(s) 930
HaeII RGCGCY 1 cut(s) 823
HaeIII GGCC 3 cut(s) 140, 368, 1103
HapII CCGG 2 cut(s) 209, 564
HhaI GCGC 1 cut(s) 822
Hin1II CATG 6 cut(s) 266, 289, 334, 367, 723, 742
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 1 cut(s) 769
HpaII CCGG 2 cut(s) 209, 564
HphI GGTGA 2 cut(s) 38, 278
Hpy166II GTNNAC 2 cut(s) 132, 726
Hpy188I TCNGA 6 cut(s) 10, 27, 198, 224, 276, 873
Hpy8I GTNNAC 2 cut(s) 132, 726
HpyAV CCTTC 1 cut(s) 810
HpyCH4III ACNGT 2 cut(s) 152, 293
HpyCH4IV ACGT 1 cut(s) 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 1109
HpyF3I CTNAG 5 cut(s) 36, 75, 87, 350, 948
HpySE526I ACGT 1 cut(s) 893
Hsp92II CATG 6 cut(s) 266, 289, 334, 367, 723, 742
HspAI GCGC 1 cut(s) 820
Kzo9I GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 3 cut(s) 44, 337, 889
LweI GCATC 3 cut(s) 175, 444, 1076
MaeI CTAG 4 cut(s) 155, 533, 662, 899
MaeII ACGT 1 cut(s) 893
MaeIII GTNAC 1 cut(s) 266
MalI GATC 6 cut(s) 126, 273, 357, 870, 875, 1118
MboI GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
MboII GAAGA 7 cut(s) 47, 242, 601, 694, 776, 864, 1111
MfeI CAATTG 2 cut(s) 429, 488
MhlI GDGCHC 4 cut(s) 17, 531, 564, 572
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 8 cut(s) 413, 420, 429, 447, 488, 518, 804, 939
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 140
MseI TTAA 2 cut(s) 803, 935
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 2 cut(s) 209, 564
MspR9I CCNGG 4 cut(s) 564, 565, 574, 926
MunI CAATTG 2 cut(s) 429, 488
MvaI CCWGG 2 cut(s) 574, 926
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 331, 1109
NciI CCSGG 2 cut(s) 564, 565
NdeII GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
NlaIII CATG 6 cut(s) 266, 289, 334, 367, 723, 742
NlaIV GGNNCC 2 cut(s) 561, 569
NmuCI GTSAC 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 3 cut(s) 34, 327, 904
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 572, 924
PspFI CCCAGC 1 cut(s) 990
PspGI CCWGG 2 cut(s) 572, 924
PspN4I GGNNCC 2 cut(s) 561, 569
PspPI GGNCC 1 cut(s) 224
RsaI GTAC 1 cut(s) 1130
RsaNI GTAC 1 cut(s) 1129
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 803, 935
SatI GCNGC 3 cut(s) 33, 326, 903
Sau3AI GATC 6 cut(s) 124, 271, 355, 868, 873, 1116
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 1130
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 4 cut(s) 564, 565, 574, 926
SduI GDGCHC 4 cut(s) 17, 531, 564, 572
SfaNI GCATC 3 cut(s) 175, 444, 1076
SfcI CTRYAG 3 cut(s) 109, 696, 972
SinI GGWCC 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
SpeI ACTAGT 1 cut(s) 661
Sse9I AATT 8 cut(s) 413, 420, 429, 447, 488, 518, 804, 939
SsiI CCGC 4 cut(s) 114, 188, 406, 965
SspMI CTAG 4 cut(s) 155, 533, 662, 899
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 562, 563, 572, 924
StyI CCWWGG 2 cut(s) 135, 1006
TaaI ACNGT 2 cut(s) 152, 293
TaiI ACGT 1 cut(s) 896
TasI AATT 8 cut(s) 413, 420, 429, 447, 488, 518, 804, 939
TatI WGTACW 1 cut(s) 1128
Tru1I TTAA 2 cut(s) 803, 935
Tru9I TTAA 2 cut(s) 803, 935
TscAI CASTG 4 cut(s) 531, 864, 1032, 1038
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 3 cut(s) 32, 325, 902
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 5 cut(s) 249, 302, 392, 920, 1122
TspMI CCCGGG 1 cut(s) 563
TspRI CASTG 4 cut(s) 531, 864, 1032, 1038
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 413, 518
XbaI TCTAGA 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmaI CCCGGG 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 4 cut(s) 155, 533, 662, 899
ZrmI AGTACT 1 cut(s) 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.