Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000247.1

Orthogroup ID

OG0007724

Physical Location & Seq

Genomic Coordinates Forward (+)

161396 .. 162762

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000247.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ctgaagcaccttagagaagaacacttggaagctgattcaagagcgcaggacctctctggaaagctagctgaaggtcagattgtgtggcttcgtttctcaacagaagtactctgtctagactttatcaaatgtgactttatcaaagttcttgatcggtttaccttggccatttcttactgtctagactttatcaaatgggatgttatatttgatgcggagtatccgatgtctgcacccgatattatattcggacctgaagatgaaagttttcagcagtttcttgtattgcatggtgaagatctgaagtctcccatgaaccgtttgggtggttgggatagcagagaccctacgcagctcatgcttcttgttcaagaactgagagatcaatacatggcctaccagatgaagcgtgttggagaggttcaagatgaccgcgtgaaatttgaaattagcacaattgcttttcgggagggaattgagatgcacttgagttctggatatgataagccagaggaggtcaaatttgcagtgcccctagtagatacgaacataaacaaaatggtgccggggtgcccctggatatatccacagaagatatacttgcagtgcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRE

Protein Analysis

204

Amino Acids

23.75

Weight (kDa)

4.76

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42470
fragaria_vesca	FvH4_2g38390 FvH4_2g38390
malus_domestica	MD08G1012700.v1.1 MD11G1014100.v1.1 MD15G1011700.v1.1
prunus_persica	Prupe.1G364700_v2.0.a1
pyrus_communis	pycom08g01080 pycom15g01030
rosa_chinensis	RchiOBHm_Chr4g0398171 RchiOBHm_Chr6g0302911
rosa_laevigata	RLG00000011124
rosa_multiflora	Rmu_sc0000247.1_g000032 Rmu_ssc0000460.1_g000017
rosa_roxburghii	Rroxscaffold_7G00165170
rosa_rugosa	Rorug06G0318100 Rorug06G0318200
rosa_samantha	Rh6AG431700 Rh6BG208800 Rh6BG470900 Rh6CG444100 Rh6DG430900
rosa_wichuraiana	Rw4G017240 Rw6G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	562, 570
AccII	CGCG	1 cut(s)	435
AciI	CCGC	2 cut(s)	215, 433
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	440, 521
AcuI	CTGAAG	4 cut(s)	23, 90, 276, 323
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	39, 371, 425, 446
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	4 cut(s)	32, 64, 68, 355
AluI	AGCT	4 cut(s)	32, 64, 68, 355
Alw26I	GTCTC	2 cut(s)	312, 336
AoxI	GGCC	2 cut(s)	165, 393
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	440, 521
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	49, 251
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	49, 251
BaeGI	GKGCMC	3 cut(s)	534, 575, 611
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	2 cut(s)	562, 570
BbvI	GCAGC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	312, 336
BfaI	CTAG	5 cut(s)	65, 116, 182, 536, 613
BfuI	GTATCC	1 cut(s)	231
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	567, 577
Bme18I	GGWCC	2 cut(s)	49, 251
BmgT120I	GGNCC	2 cut(s)	49, 251
BmiI	GGNNCC	2 cut(s)	564, 572
BmrFI	CCNGG	2 cut(s)	567, 577
BmsI	GCATC	2 cut(s)	202, 471
BmtI	GCTAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	508
BpuMI	CCSGG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	162, 566, 575
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	3 cut(s)	162, 566, 575
BseGI	GGATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	3 cut(s)	534, 575, 611
BseXI	GCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	167, 395
BshNI	GGYRCC	2 cut(s)	562, 570
BsiSI	CCGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	312, 336
BsnI	GGCC	2 cut(s)	167, 395
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	534, 575, 611
Bsp143I	GATC	3 cut(s)	151, 298, 382
BspACI	CCGC	2 cut(s)	215, 433
BspANI	GGCC	2 cut(s)	167, 395
BspCNI	CTCAG	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	564, 572
BspOI	GCTAGC	1 cut(s)	68
BspT107I	GGYRCC	2 cut(s)	562, 570
BspTNI	GGTCTC	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	162, 566, 575
BssMI	GATC	3 cut(s)	151, 298, 382
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	2 cut(s)	179, 320
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	11, 377
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	154, 301, 385
BstMAI	GTCTC	2 cut(s)	312, 336
BstMBI	GATC	3 cut(s)	151, 298, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	565, 575
BstSLI	GKGCMC	3 cut(s)	534, 575, 611
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	167, 395
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	2 cut(s)	534, 611
BtsIMutI	CAGTG	2 cut(s)	534, 611
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	49, 251
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	4 cut(s)	290, 313, 358, 391
CviJI	RGCY	8 cut(s)	32, 64, 68, 88, 167, 355, 395, 508
CviKI_1	RGCY	8 cut(s)	32, 64, 68, 88, 167, 355, 395, 508
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	11, 377
DpnI	GATC	3 cut(s)	153, 300, 384
DpnII	GATC	3 cut(s)	151, 298, 382
EaeI	YGGCCR	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	49, 251
Eco57I	CTGAAG	4 cut(s)	23, 90, 276, 323
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	293, 316, 361, 394
FalI	AAGNNNNNCTT	1 cut(s)	584
FatI	CATG	4 cut(s)	289, 312, 357, 390
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	5 cut(s)	65, 116, 182, 536, 613
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	167, 395
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	4 cut(s)	293, 316, 361, 394
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	78, 225, 251, 303
Hpy188III	TCNNGA	9 cut(s)	39, 57, 116, 149, 182, 371, 425, 467, 495
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	2 cut(s)	179, 320
HpyCH4V	TGCA	5 cut(s)	233, 289, 484, 527, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	11, 377
Hsp92II	CATG	4 cut(s)	293, 316, 361, 394
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	3 cut(s)	151, 298, 382
LpnPI	CCDG	9 cut(s)	32, 42, 267, 413, 480, 522, 562, 579, 589
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	202, 471
MaeI	CTAG	5 cut(s)	65, 116, 182, 536, 613
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	153, 300, 384
MboI	GATC	3 cut(s)	151, 298, 382
MboII	GAAGA	4 cut(s)	29, 269, 308, 604
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	534, 575, 611
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	5 cut(s)	440, 447, 456, 474, 521
MluNI	TGGCCA	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	5 cut(s)	62, 412, 463, 505, 508
Mox20I	TGGCCA	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	567, 577
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	577
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	358
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	151, 298, 382
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	4 cut(s)	293, 316, 361, 394
NlaIV	GGNNCC	2 cut(s)	564, 572
NmuCI	GTSAC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	564, 572
PspPI	GGNCC	2 cut(s)	49, 251
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	3 cut(s)	151, 298, 382
Sau96I	GGNCC	2 cut(s)	49, 251
ScaI	AGTACT	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	567, 577
SduI	GDGCHC	3 cut(s)	534, 575, 611
SfaNI	GCATC	2 cut(s)	202, 471
SinI	GGWCC	2 cut(s)	49, 251
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	5 cut(s)	440, 447, 456, 474, 521
SsiI	CCGC	2 cut(s)	215, 433
SspMI	CTAG	5 cut(s)	65, 116, 182, 536, 613
StyD4I	CCNGG	2 cut(s)	565, 575
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	179, 320
TasI	AATT	5 cut(s)	440, 447, 456, 474, 521
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	2 cut(s)	534, 611
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	276, 329, 419
TspRI	CASTG	2 cut(s)	534, 611
VpaK11BI	GGWCC	2 cut(s)	49, 251
XapI	RAATTY	2 cut(s)	440, 521
XbaI	TCTAGA	2 cut(s)	115, 181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	5 cut(s)	65, 116, 182, 536, 613
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.