Rh6DG430900

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007724
Physical Location & Seq
Reverse (-)
61013258 .. 61017222
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG430900.1

Sequence Viewer

Length: 927 bp
ATGTCTGCACCGGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCCGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAACAAATTTGTTTCCACCCCATCAGCTCCTCGTTTGAAACTAGTAGCTACACCAGACTTGAAGACACTATTTTCTATAGATGATGTCAAACTTCCTACATGGTTGACGGGGATGTGCATGGCTGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGCATTTCAACCCCCAAGGTGTGCCTATCAAATCACTGCCGCTGACTGATTATCCATTTAGCCCAAGATGGGAAGCATCGCTAATGGCTGAACGAATATGGGACTTTTTGGCCGATGAAGCCTTGATCTTCAAGAAGTACTGCAACGAGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

308

Amino Acids

35.27

Weight (kDa)

5.1

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 3 - 259 5.6e-23 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 2 cut(s) 337, 345
AccII CGCG 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 3 cut(s) 208, 743, 809
AclI AACGTT 1 cut(s) 671
AclWI GGATC 2 cut(s) 68, 641
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 3 cut(s) 215, 296, 404
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 908
AfiI CCNNNNNNNGG 1 cut(s) 838
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 2 cut(s) 350, 702
AluBI AGCT 6 cut(s) 130, 425, 446, 644, 680, 749
AluI AGCT 6 cut(s) 130, 425, 446, 644, 680, 749
Alw26I GTCTC 3 cut(s) 87, 111, 539
AlwI GGATC 2 cut(s) 68, 641
Ama87I CYCGRG 1 cut(s) 341
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 2 cut(s) 168, 879
ApeKI GCWGC 2 cut(s) 127, 680
ApoI RAATTY 3 cut(s) 215, 296, 404
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 2 cut(s) 342, 343
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 3 cut(s) 309, 342, 350
BanI GGYRCC 2 cut(s) 337, 345
BbsI GAAGAC 2 cut(s) 467, 637
BbvI GCAGC 2 cut(s) 139, 667
BccI CCATC 2 cut(s) 427, 831
BceAI ACGGC 1 cut(s) 602
BciT130I CCWGG 2 cut(s) 352, 704
BcnI CCSGG 2 cut(s) 342, 343
BcoDI GTCTC 3 cut(s) 87, 111, 539
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 3 cut(s) 311, 440, 677
BfmI CTRYAG 2 cut(s) 474, 750
BfoI RGCGCY 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 3 cut(s) 128, 681, 809
BlsI GCNGC 3 cut(s) 129, 682, 810
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 4 cut(s) 342, 343, 352, 704
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 339, 347
BmrFI CCNGG 4 cut(s) 342, 343, 352, 704
BmsI GCATC 2 cut(s) 246, 854
BpiI GAAGAC 2 cut(s) 467, 637
BpmI CTGGAG 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 342, 343
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 341, 350, 784
BsaWI WCCGGW 2 cut(s) 10, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 838
Bse1I ACTGG 1 cut(s) 635
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 2 cut(s) 352, 704
BseDI CCNNGG 3 cut(s) 341, 350, 784
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 838
BseMII CTCAG 2 cut(s) 143, 740
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 2 cut(s) 302, 417
BseSI GKGCMC 3 cut(s) 309, 342, 350
BseXI GCAGC 2 cut(s) 139, 667
BseYI CCCAGC 1 cut(s) 768
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 170, 881
BshNI GGYRCC 2 cut(s) 337, 345
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 3 cut(s) 11, 270, 342
BslFI GGGAC 1 cut(s) 884
BslI CCNNNNNNNGG 1 cut(s) 838
BsmAI GTCTC 3 cut(s) 87, 111, 539
BsmFI GGGAC 1 cut(s) 884
BsnI GGCC 2 cut(s) 170, 881
Bso31I GGTCTC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 309, 342, 350
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 73, 157, 646, 651, 894
BspACI CCGC 3 cut(s) 208, 743, 809
BspANI GGCC 2 cut(s) 170, 881
BspCNI CTCAG 2 cut(s) 144, 739
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 339, 347
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 68, 641
BspT107I GGYRCC 2 cut(s) 337, 345
BspTNI GGTCTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 3 cut(s) 341, 350, 784
BssMI GATC 5 cut(s) 73, 157, 646, 651, 894
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 2 cut(s) 352, 704
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 2 cut(s) 152, 726
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 5 cut(s) 76, 160, 649, 654, 897
BstMAI GTCTC 3 cut(s) 87, 111, 539
BstMBI GATC 5 cut(s) 73, 157, 646, 651, 894
BstMWI GCNNNNNNNGC 2 cut(s) 133, 887
BstNI CCWGG 2 cut(s) 352, 704
BstSCI CCNGG 4 cut(s) 340, 341, 350, 702
BstSFI CTRYAG 2 cut(s) 474, 750
BstSLI GKGCMC 3 cut(s) 309, 342, 350
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 139, 667
BstV2I GAAGAC 2 cut(s) 467, 637
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 170, 881
BtgZI GCGATG 1 cut(s) 831
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 2 cut(s) 309, 803
BtsIMutI CAGTG 3 cut(s) 309, 642, 803
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 747
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 26
Cfr9I CCCGGG 1 cut(s) 341
Csp6I GTAC 1 cut(s) 907
CviAII CATG 6 cut(s) 65, 88, 133, 166, 498, 517
CviQI GTAC 1 cut(s) 907
DdeI CTNAG 2 cut(s) 152, 726
DpnI GATC 5 cut(s) 75, 159, 648, 653, 896
DpnII GATC 5 cut(s) 73, 157, 646, 651, 894
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 784
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 350, 702
EcoT14I CCWWGG 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 6 cut(s) 68, 91, 136, 169, 501, 520
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 534, 566
FaqI GGGAC 1 cut(s) 884
FatI CATG 6 cut(s) 64, 87, 132, 165, 497, 516
Fnu4HI GCNGC 3 cut(s) 128, 681, 809
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 3 cut(s) 128, 681, 809
FspBI CTAG 3 cut(s) 311, 440, 677
GlaI GCGC 1 cut(s) 599
GluI GCNGC 3 cut(s) 128, 681, 809
GsaI CCCAGC 1 cut(s) 772
GsuI CTGGAG 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 2 cut(s) 170, 881
HapII CCGG 3 cut(s) 11, 270, 342
HhaI GCGC 1 cut(s) 600
Hin1II CATG 6 cut(s) 68, 91, 136, 169, 501, 520
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 1 cut(s) 547
HpaII CCGG 3 cut(s) 11, 270, 342
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 3 cut(s) 26, 78, 651
Hpy188III TCNNGA 8 cut(s) 146, 200, 242, 270, 539, 551, 687, 901
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 671
HpyCH4V TGCA 8 cut(s) 8, 64, 259, 302, 379, 516, 660, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 887
HpyF3I CTNAG 2 cut(s) 152, 726
HpySE526I ACGT 1 cut(s) 671
Hsp92II CATG 6 cut(s) 68, 91, 136, 169, 501, 520
HspAI GCGC 1 cut(s) 598
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 5 cut(s) 73, 157, 646, 651, 894
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 139, 667
LweI GCATC 2 cut(s) 246, 854
MaeI CTAG 3 cut(s) 311, 440, 677
MaeII ACGT 1 cut(s) 671
MalI GATC 5 cut(s) 75, 159, 648, 653, 896
MboI GATC 5 cut(s) 73, 157, 646, 651, 894
MboII GAAGA 7 cut(s) 44, 83, 379, 472, 554, 642, 889
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 309, 342, 350
MluCI AATT 8 cut(s) 215, 222, 231, 249, 296, 404, 582, 717
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 8 cut(s) 187, 238, 280, 283, 438, 546, 562, 601
MroI TCCGGA 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 581, 713
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 3 cut(s) 11, 270, 342
MspR9I CCNGG 4 cut(s) 342, 343, 352, 704
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 2 cut(s) 352, 704
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 133, 887
NciI CCSGG 2 cut(s) 342, 343
NdeII GATC 5 cut(s) 73, 157, 646, 651, 894
NlaIII CATG 6 cut(s) 68, 91, 136, 169, 501, 520
NlaIV GGNNCC 2 cut(s) 339, 347
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 129, 682, 810
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 350, 702
PspFI CCCAGC 1 cut(s) 768
PspGI CCWGG 2 cut(s) 350, 702
PspN4I GGNNCC 2 cut(s) 339, 347
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 908
RsaNI GTAC 1 cut(s) 907
SaqAI TTAA 2 cut(s) 581, 713
SatI GCNGC 3 cut(s) 128, 681, 809
Sau3AI GATC 5 cut(s) 73, 157, 646, 651, 894
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 4 cut(s) 342, 343, 352, 704
SduI GDGCHC 3 cut(s) 309, 342, 350
SfaNI GCATC 2 cut(s) 246, 854
SfcI CTRYAG 2 cut(s) 474, 750
SinI GGWCC 1 cut(s) 26
SmaI CCCGGG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 8 cut(s) 215, 222, 231, 249, 296, 404, 582, 717
SsiI CCGC 3 cut(s) 208, 743, 809
SspMI CTAG 3 cut(s) 311, 440, 677
StyD4I CCNGG 4 cut(s) 340, 341, 350, 702
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 674
TasI AATT 8 cut(s) 215, 222, 231, 249, 296, 404, 582, 717
TatI WGTACW 1 cut(s) 906
TauI GCSGC 1 cut(s) 811
Tru1I TTAA 2 cut(s) 581, 713
Tru9I TTAA 2 cut(s) 581, 713
TscAI CASTG 3 cut(s) 309, 642, 810
TseI GCWGC 2 cut(s) 127, 680
TspDTI ATGAA 5 cut(s) 51, 104, 194, 698, 900
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 3 cut(s) 309, 642, 810
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 215, 296, 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 311, 440, 677
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.