pycom15g01030

BRCA1-A complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
555575 .. 559144
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g01030.11

Sequence Viewer

Length: 1272 bp
ATGGCCGGTCAGGCGCGGGTTAATGCTGGACGCTGCCGTTTTAGGTCTCTCCTACTTCCGGATTCAGTTGAGGTGACGAATTTCACTTCCACCAGATCAATTTCTCAGTCTCTTCGCTCTGCGACCAGCATGCCGTCGGAGAGTGTTCCGCCGCTCGTCGCCGCCCAGCTCAACTACCTCCTCAATCACTTCCCTCTCGTCGTCAAGATTGAGAACAAGTGGTCTGGCAGTAAGTACTACCCCGGATTTCTCGACCGGTTCACCCTAGTCATTTCCTACTGTCTAGACGTTATCAAATGGGATCTTATATTTGATTCGGAGTCTCCATTCTCTGCACCGGATGTTATATTCGGACCTGATGATGAGAAATTTCAGCAGTTTCTTGTCTCGCCCGATGAGGGAGAAGTGGACTCAAAGTTTCACATGAAGTGTTTGAGTGATTGGAATAGTAGAGACCCTACACAGCTGATGCTTCTCATTCAAGAACTAAGGGATCAGTACATGTCCTACCAGAAGAAGCGTGTTGCAGAAGTTGATGATGACAGGTTGAAGTTTGAAATTAGCACAATTGTTGCTCGTGAGGGCATTGAGATGCAGATGAGTTCCGGAGTTGACAAGCCAGAGGAGGTCAAATTTGCAGTTCCTCTATTAGACATGAACATAAATAAGATGGTGCCTGCATACCCCTGGAGACATCAACAAAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATATGTTTCCACTCCTTCAGCTCCTCGATTGAAACTAGTGTCGACCTCAGAGTTGAAGACTCTATTTTCCATTGATGAAGTCAAACTCCGTCCGTGGTTGAATGGGATGTGCATGGCTGAATACCTTCCGCATCTTGAAGAATCTCTTGAGAAGCAGGTTTTGGAGGCAGTCTCCTTGGTTGATGTTAGGAGGCGCTTTATTGAGGCATTAGCTCTGCAGTTTGGAAGACCAGTGGAAGCTGATTCGGTCTTATGCAGAAAGGCAACATTCCTTACCGCTTCTGGAGTTTTCACTTTTCTGGTTCATGTTTCAATTTCAACTCAGTTTCCAAAGCAAAAGCCGGGTTTGATGCTTCAGAGTTCACAGCATTTCAACCTCCAAGGTGTGCCAATCAAGTCACTTCCTCTAACTGAATTTCCTTGGAGCCCTAGATGGGAAGTACCTCATATGGCTGAGCGAATTTGCGACTATTTGACGGACGAGGCTGTGAACTTCAAGAAGCACTGCAATGAGCCTCCACCGCAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

48.5

Weight (kDa)

6.19

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 706, 886
AccB1I GGYRCC 1 cut(s) 673
AccBSI CCGCTC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 782
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 2 cut(s) 58, 605
AciI CCGC 7 cut(s) 16, 149, 152, 162, 869, 1017, 1262
AclWI GGATC 2 cut(s) 309, 501
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 79, 368, 632, 1154, 1200
AcuI CTGAAG 2 cut(s) 741, 1079
AfaI GTAC 3 cut(s) 236, 500, 1182
AfiI CCNNNNNNNGG 3 cut(s) 58, 398, 1174
AflIII ACRYGT 1 cut(s) 501
AgeI ACCGGT 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 775
AjnI CCWGG 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 5 cut(s) 169, 466, 761, 953, 980
AluI AGCT 5 cut(s) 169, 466, 761, 953, 980
Alw26I GTCTC 7 cut(s) 51, 114, 327, 391, 447, 685, 916
AlwI GGATC 2 cut(s) 309, 501
Aor13HI TCCGGA 2 cut(s) 58, 605
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 33, 1264
ApoI RAATTY 5 cut(s) 79, 368, 632, 1154, 1200
AsiGI ACCGGT 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 2 cut(s) 16, 936
AspS9I GGNCC 1 cut(s) 353
AsuC2I CCSGG 2 cut(s) 243, 1083
AsuHPI GGTGA 2 cut(s) 85, 253
AvaII GGWCC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 1169
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 2 cut(s) 803, 973
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 664, 1167
BceAI ACGGC 2 cut(s) 21, 118
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 1 cut(s) 688
BcnI CCSGG 2 cut(s) 243, 1083
BcoDI GTCTC 7 cut(s) 51, 114, 327, 391, 447, 685, 916
BcuI ACTAGT 1 cut(s) 775
BfaI CTAG 5 cut(s) 266, 284, 776, 1170, 1270
BfmI CTRYAG 1 cut(s) 956
BfoI RGCGCY 1 cut(s) 937
BfuAI ACCTGC 2 cut(s) 706, 886
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 4 cut(s) 34, 152, 162, 1265
BlpI GCTNAGC 1 cut(s) 1194
BlsI GCNGC 4 cut(s) 35, 153, 163, 1266
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 3 cut(s) 243, 688, 1083
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 675, 1166
BmrFI CCNGG 3 cut(s) 243, 688, 1083
BmsI GCATC 4 cut(s) 459, 582, 880, 1080
BpiI GAAGAC 2 cut(s) 803, 973
BplI GAGNNNNNCTC 2 cut(s) 896, 928
BpmI CTGGAG 2 cut(s) 709, 1044
Bpu1102I GCTNAGC 1 cut(s) 1194
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 2 cut(s) 243, 1083
BsaI GGTCTC 2 cut(s) 51, 447
BsaJI CCNNGG 6 cut(s) 241, 686, 833, 915, 1120, 1160
BsaWI WCCGGW 4 cut(s) 58, 255, 337, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 398, 1174
Bse118I RCCGGY 2 cut(s) 5, 255
Bse1I ACTGG 1 cut(s) 971
Bse3DI GCAATG 1 cut(s) 1255
BseAI TCCGGA 2 cut(s) 58, 605
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 6 cut(s) 241, 686, 833, 915, 1120, 1160
BseGI GGATG 2 cut(s) 346, 852
BseLI CCNNNNNNNGG 3 cut(s) 58, 398, 1174
BseMI GCAATG 1 cut(s) 1255
BseMII CTCAG 4 cut(s) 119, 801, 1076, 1185
BseNI ACTGG 1 cut(s) 971
BseRI GAGGAG 3 cut(s) 170, 638, 753
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 673
BshTI ACCGGT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 7 cut(s) 6, 59, 243, 256, 338, 606, 1082
BslI CCNNNNNNNGG 3 cut(s) 58, 398, 1174
BsmAI GTCTC 7 cut(s) 51, 114, 327, 391, 447, 685, 916
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 51, 447
Bsp1286I GDGCHC 1 cut(s) 1169
Bsp13I TCCGGA 2 cut(s) 58, 605
Bsp143I GATC 3 cut(s) 95, 301, 493
Bsp1720I GCTNAGC 1 cut(s) 1194
BspACI CCGC 7 cut(s) 16, 149, 152, 162, 869, 1017, 1262
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 118, 800, 1075, 1186
BspEI TCCGGA 2 cut(s) 58, 605
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 675, 1166
BspMAI CTGCAG 1 cut(s) 960
BspMI ACCTGC 2 cut(s) 706, 886
BspPI GGATC 2 cut(s) 309, 501
BspT107I GGYRCC 1 cut(s) 673
BspTNI GGTCTC 2 cut(s) 51, 447
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 1255
BsrFI RCCGGY 2 cut(s) 5, 255
BsrI ACTGG 1 cut(s) 971
BssAI RCCGGY 2 cut(s) 5, 255
BssECI CCNNGG 6 cut(s) 241, 686, 833, 915, 1120, 1160
BssMI GATC 3 cut(s) 95, 301, 493
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 3 cut(s) 915, 1120, 1160
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 131, 678
BstDEI CTNAG 5 cut(s) 105, 488, 787, 1062, 1194
BstDSI CCRYGG 1 cut(s) 833
BstF5I GGATG 2 cut(s) 346, 852
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 937
BstHHI GCGC 2 cut(s) 16, 936
BstKTI GATC 3 cut(s) 98, 304, 496
BstMAI GTCTC 7 cut(s) 51, 114, 327, 391, 447, 685, 916
BstMBI GATC 3 cut(s) 95, 301, 493
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1261
BstNI CCWGG 1 cut(s) 688
BstNSI RCATGY 2 cut(s) 133, 505
BstSCI CCNGG 3 cut(s) 241, 686, 1081
BstSFI CTRYAG 1 cut(s) 956
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 803, 973
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 833
BtsCI GGATG 2 cut(s) 346, 852
BtsI GCAGTG 1 cut(s) 1243
BtsIMutI CAGTG 2 cut(s) 978, 1243
BveI ACCTGC 2 cut(s) 706, 886
Cac8I GCNNGC 2 cut(s) 131, 678
CfoI GCGC 2 cut(s) 16, 936
Cfr10I RCCGGY 2 cut(s) 5, 255
Cfr13I GGNCC 1 cut(s) 353
CseI GACGC 1 cut(s) 39
Csp6I GTAC 3 cut(s) 235, 499, 1181
CspAI ACCGGT 1 cut(s) 255
CviAII CATG 6 cut(s) 130, 424, 502, 655, 853, 1046
CviQI GTAC 3 cut(s) 235, 499, 1181
DdeI CTNAG 5 cut(s) 105, 488, 787, 1062, 1194
DpnI GATC 3 cut(s) 97, 303, 495
DpnII GATC 3 cut(s) 95, 301, 493
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 3 cut(s) 915, 1120, 1160
Eco24I GRGCYC 1 cut(s) 1169
Eco31I GGTCTC 2 cut(s) 51, 447
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 741, 1079
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 3 cut(s) 915, 1120, 1160
EcoT38I GRGCYC 1 cut(s) 1169
ErhI CCWWGG 3 cut(s) 915, 1120, 1160
FaeI CATG 6 cut(s) 133, 427, 505, 658, 856, 1049
FalI AAGNNNNNCTT 4 cut(s) 695, 727, 870, 902
FatI CATG 6 cut(s) 129, 423, 501, 654, 852, 1045
FauI CCCGC 1 cut(s) 9
FauNDI CATATG 1 cut(s) 1188
FblI GTMKAC 1 cut(s) 782
Fnu4HI GCNGC 4 cut(s) 34, 152, 162, 1265
FokI GGATG 2 cut(s) 353, 859
FriOI GRGCYC 1 cut(s) 1169
Fsp4HI GCNGC 4 cut(s) 34, 152, 162, 1265
FspBI CTAG 5 cut(s) 266, 284, 776, 1170, 1270
GlaI GCGC 2 cut(s) 15, 935
GluI GCNGC 4 cut(s) 34, 152, 162, 1265
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 2 cut(s) 709, 1044
HaeII RGCGCY 1 cut(s) 937
HaeIII GGCC 1 cut(s) 5
HapII CCGG 7 cut(s) 6, 59, 243, 256, 338, 606, 1082
HgaI GACGC 1 cut(s) 39
HhaI GCGC 2 cut(s) 16, 936
Hin1II CATG 6 cut(s) 133, 427, 505, 658, 856, 1049
Hin6I GCGC 2 cut(s) 14, 934
HinP1I GCGC 2 cut(s) 14, 934
HincII GTYRAC 2 cut(s) 613, 783
HindII GTYRAC 2 cut(s) 613, 783
HinfI GANTC 7 cut(s) 62, 314, 320, 410, 799, 881, 983
HpaII CCGG 7 cut(s) 6, 59, 243, 256, 338, 606, 1082
HphI GGTGA 2 cut(s) 85, 253
Hpy166II GTNNAC 6 cut(s) 261, 409, 613, 783, 1103, 1231
Hpy188I TCNGA 5 cut(s) 139, 319, 353, 790, 1098
Hpy8I GTNNAC 6 cut(s) 261, 409, 613, 783, 1103, 1231
Hpy99I CGWCG 3 cut(s) 139, 161, 203
HpyAV CCTTC 2 cut(s) 765, 875
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1261
HpyF3I CTNAG 5 cut(s) 105, 488, 787, 1062, 1194
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 6 cut(s) 133, 427, 505, 658, 856, 1049
HspAI GCGC 2 cut(s) 14, 934
Kpn2I TCCGGA 2 cut(s) 58, 605
Kzo9I GATC 3 cut(s) 95, 301, 493
LmnI GCTCC 2 cut(s) 766, 1164
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 4 cut(s) 459, 582, 880, 1080
MaeI CTAG 5 cut(s) 266, 284, 776, 1170, 1270
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 73, 1137
MalI GATC 3 cut(s) 97, 303, 495
MbiI CCGCTC 1 cut(s) 154
MboI GATC 3 cut(s) 95, 301, 493
MboII GAAGA 5 cut(s) 104, 526, 808, 890, 978
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 1169
MluCI AATT 9 cut(s) 79, 99, 368, 558, 567, 632, 1053, 1154, 1200
MlyI GAGTC 3 cut(s) 329, 404, 793
MmeI TCCRAC 1 cut(s) 117
MroI TCCGGA 2 cut(s) 58, 605
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 2 cut(s) 590, 1248
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 7 cut(s) 6, 59, 243, 256, 338, 606, 1082
MspR9I CCNGG 3 cut(s) 243, 688, 1083
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 688
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 11, 1261
NciI CCSGG 2 cut(s) 243, 1083
NdeI CATATG 1 cut(s) 1188
NdeII GATC 3 cut(s) 95, 301, 493
NlaIII CATG 6 cut(s) 133, 427, 505, 658, 856, 1049
NlaIV GGNNCC 2 cut(s) 675, 1166
NmuCI GTSAC 2 cut(s) 73, 1137
NspI RCATGY 2 cut(s) 133, 505
PaeI GCATGC 1 cut(s) 133
PciI ACATGT 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 4 cut(s) 62, 314, 881, 983
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 4 cut(s) 35, 153, 163, 1266
PleI GAGTC 3 cut(s) 328, 404, 793
PpsI GAGTC 3 cut(s) 328, 404, 793
PscI ACATGT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 686
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 675, 1166
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 960
PsuI RGATCY 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 3 cut(s) 236, 500, 1182
RsaNI GTAC 3 cut(s) 235, 499, 1181
RseI CAYNNNNRTG 2 cut(s) 590, 1248
SalI GTCGAC 1 cut(s) 781
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 4 cut(s) 34, 152, 162, 1265
Sau3AI GATC 3 cut(s) 95, 301, 493
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 3 cut(s) 329, 404, 793
ScrFI CCNGG 3 cut(s) 243, 688, 1083
SduI GDGCHC 1 cut(s) 1169
SfaNI GCATC 4 cut(s) 459, 582, 880, 1080
SfcI CTRYAG 1 cut(s) 956
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 590, 1248
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 775
SphI GCATGC 1 cut(s) 133
Sse9I AATT 9 cut(s) 79, 99, 368, 558, 567, 632, 1053, 1154, 1200
SsiI CCGC 7 cut(s) 16, 149, 152, 162, 869, 1017, 1262
SspMI CTAG 5 cut(s) 266, 284, 776, 1170, 1270
StyD4I CCNGG 3 cut(s) 241, 686, 1081
StyI CCWWGG 3 cut(s) 915, 1120, 1160
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 252, 766, 782
TaqII GACCGA 1 cut(s) 976
TasI AATT 9 cut(s) 79, 99, 368, 558, 567, 632, 1053, 1154, 1200
TatI WGTACW 2 cut(s) 234, 498
TauI GCSGC 2 cut(s) 154, 164
TfiI GAWTC 4 cut(s) 62, 314, 881, 983
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 978, 1250
TseFI GTSAC 2 cut(s) 73, 1137
TseI GCWGC 2 cut(s) 33, 1264
Tsp45I GTSAC 2 cut(s) 73, 1137
TspDTI ATGAA 4 cut(s) 440, 671, 831, 1034
TspGWI ACGGA 3 cut(s) 818, 822, 1232
TspRI CASTG 2 cut(s) 978, 1250
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 5 cut(s) 79, 368, 632, 1154, 1200
XbaI TCTAGA 1 cut(s) 283
XceI RCATGY 2 cut(s) 133, 505
XmiI GTMKAC 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 5 cut(s) 266, 284, 776, 1170, 1270
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.