Rh6BG470900

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007724
Physical Location & Seq
Forward (+)
67880185 .. 67883567
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG470900.1

Sequence Viewer

Length: 762 bp
ATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGTGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCCGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATTTGTTTCCACCCCATCAGCTCCTCGTTTGAAACTAGTAGCTACACCAGACTTGAAGACACTATTTTCTATAGATGATGTCAAACTTCCTACATGGTTGACGGGGATGTGCATGGCTGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTCGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGCATTTCAACCCCCAAGGTGTGCCTATCAAATCACTGCCGCTGACTGATTATCCATTTAGCCCAAGATGGGAAGCATCGCTAATGGCTGAACGAATATGGGACTTTTTGGCCGATGAAGCCTTGATCTTCAAGAAGTACTGCAACGAGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

253

Amino Acids

28.95

Weight (kDa)

6.0

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 2 - 204 2.9e-15 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 2 cut(s) 172, 180
AccIII TCCGGA 1 cut(s) 104
AciI CCGC 2 cut(s) 578, 644
AclI AACGTT 1 cut(s) 506
AclWI GGATC 1 cut(s) 476
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 3 cut(s) 50, 131, 239
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 1 cut(s) 673
AgsI TTSAA 9 cut(s) 35, 56, 271, 295, 377, 389, 596, 613, 736
AhlI ACTAGT 1 cut(s) 274
AjnI CCWGG 2 cut(s) 185, 537
AluBI AGCT 5 cut(s) 260, 281, 479, 515, 584
AluI AGCT 5 cut(s) 260, 281, 479, 515, 584
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 104
AoxI GGCC 2 cut(s) 3, 714
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 3 cut(s) 50, 131, 239
AspLEI GCGC 1 cut(s) 435
AsuC2I CCSGG 2 cut(s) 177, 178
AvaI CYCGRG 1 cut(s) 176
BaeGI GKGCMC 3 cut(s) 144, 177, 185
BanI GGYRCC 2 cut(s) 172, 180
BbsI GAAGAC 2 cut(s) 302, 472
BbvI GCAGC 1 cut(s) 502
BccI CCATC 2 cut(s) 262, 666
BceAI ACGGC 1 cut(s) 437
BciT130I CCWGG 2 cut(s) 187, 539
BcnI CCSGG 2 cut(s) 177, 178
BcoDI GTCTC 1 cut(s) 374
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 3 cut(s) 146, 275, 512
BfmI CTRYAG 2 cut(s) 309, 585
BfoI RGCGCY 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 2 cut(s) 516, 644
BlsI GCNGC 2 cut(s) 517, 645
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 4 cut(s) 177, 178, 187, 539
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 174, 182
BmrFI CCNGG 4 cut(s) 177, 178, 187, 539
BmsI GCATC 2 cut(s) 81, 689
BpiI GAAGAC 2 cut(s) 302, 472
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 177, 178
BsaJI CCNNGG 3 cut(s) 176, 185, 619
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 470
BseAI TCCGGA 1 cut(s) 104
BseBI CCWGG 2 cut(s) 187, 539
BseDI CCNNGG 3 cut(s) 176, 185, 619
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 2 cut(s) 137, 252
BseSI GKGCMC 3 cut(s) 144, 177, 185
BseXI GCAGC 1 cut(s) 502
BseYI CCCAGC 1 cut(s) 603
BshFI GGCC 2 cut(s) 5, 716
BshNI GGYRCC 2 cut(s) 172, 180
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 105, 177
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 2 cut(s) 5, 716
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 3 cut(s) 144, 177, 185
Bsp13I TCCGGA 1 cut(s) 104
Bsp143I GATC 3 cut(s) 481, 486, 729
BspACI CCGC 2 cut(s) 578, 644
BspANI GGCC 2 cut(s) 5, 716
BspCNI CTCAG 1 cut(s) 574
BspEI TCCGGA 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 174, 182
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 476
BspT107I GGYRCC 2 cut(s) 172, 180
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 176, 185, 619
BssMI GATC 3 cut(s) 481, 486, 729
BssT1I CCWWGG 1 cut(s) 619
Bst2UI CCWGG 2 cut(s) 187, 539
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 3 cut(s) 484, 489, 732
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 3 cut(s) 481, 486, 729
BstMWI GCNNNNNNNGC 1 cut(s) 722
BstNI CCWGG 2 cut(s) 187, 539
BstSCI CCNGG 4 cut(s) 175, 176, 185, 537
BstSFI CTRYAG 2 cut(s) 309, 585
BstSLI GKGCMC 3 cut(s) 144, 177, 185
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 2 cut(s) 302, 472
BsuRI GGCC 2 cut(s) 5, 716
BtgZI GCGATG 1 cut(s) 666
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 2 cut(s) 144, 638
BtsIMutI CAGTG 3 cut(s) 144, 477, 638
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 582
CfoI GCGC 1 cut(s) 435
Cfr9I CCCGGG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 742
CviAII CATG 2 cut(s) 333, 352
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 1 cut(s) 561
DpnI GATC 3 cut(s) 483, 488, 731
DpnII GATC 3 cut(s) 481, 486, 729
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 185, 537
EcoT14I CCWWGG 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 2 cut(s) 336, 355
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 369, 401
FaqI GGGAC 1 cut(s) 719
FatI CATG 2 cut(s) 332, 351
Fnu4HI GCNGC 2 cut(s) 516, 644
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 2 cut(s) 516, 644
FspBI CTAG 3 cut(s) 146, 275, 512
GlaI GCGC 1 cut(s) 434
GluI GCNGC 2 cut(s) 516, 644
GsaI CCCAGC 1 cut(s) 607
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 2 cut(s) 5, 716
HapII CCGG 2 cut(s) 105, 177
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 336, 355
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 1 cut(s) 382
HpaII CCGG 2 cut(s) 105, 177
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 2 cut(s) 464, 486
Hpy188III TCNNGA 7 cut(s) 35, 77, 105, 374, 386, 522, 736
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 423
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 6 cut(s) 94, 137, 214, 351, 495, 747
HpyF10VI GCNNNNNNNGC 1 cut(s) 722
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 2 cut(s) 336, 355
HspAI GCGC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 104
Kzo9I GATC 3 cut(s) 481, 486, 729
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 2 cut(s) 81, 689
MaeI CTAG 3 cut(s) 146, 275, 512
MaeII ACGT 1 cut(s) 506
MalI GATC 3 cut(s) 483, 488, 731
MboI GATC 3 cut(s) 481, 486, 729
MboII GAAGA 5 cut(s) 214, 307, 389, 477, 724
MfeI CAATTG 1 cut(s) 66
MhlI GDGCHC 3 cut(s) 144, 177, 185
MluCI AATT 8 cut(s) 50, 57, 66, 84, 131, 239, 417, 552
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 8 cut(s) 22, 73, 115, 118, 273, 381, 397, 436
MroI TCCGGA 1 cut(s) 104
MseI TTAA 2 cut(s) 416, 548
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 2 cut(s) 105, 177
MspR9I CCNGG 4 cut(s) 177, 178, 187, 539
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 2 cut(s) 187, 539
MwoI GCNNNNNNNGC 1 cut(s) 722
NciI CCSGG 2 cut(s) 177, 178
NdeII GATC 3 cut(s) 481, 486, 729
NlaIII CATG 2 cut(s) 336, 355
NlaIV GGNNCC 2 cut(s) 174, 182
PkrI GCNGC 2 cut(s) 517, 645
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp1406I AACGTT 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 185, 537
PspFI CCCAGC 1 cut(s) 603
PspGI CCWGG 2 cut(s) 185, 537
PspN4I GGNNCC 2 cut(s) 174, 182
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
SaqAI TTAA 2 cut(s) 416, 548
SatI GCNGC 2 cut(s) 516, 644
Sau3AI GATC 3 cut(s) 481, 486, 729
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 4 cut(s) 177, 178, 187, 539
SduI GDGCHC 3 cut(s) 144, 177, 185
SfaNI GCATC 2 cut(s) 81, 689
SfcI CTRYAG 2 cut(s) 309, 585
SmaI CCCGGG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 8 cut(s) 50, 57, 66, 84, 131, 239, 417, 552
SsiI CCGC 2 cut(s) 578, 644
SspMI CTAG 3 cut(s) 146, 275, 512
StyD4I CCNGG 4 cut(s) 175, 176, 185, 537
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 509
TasI AATT 8 cut(s) 50, 57, 66, 84, 131, 239, 417, 552
TatI WGTACW 1 cut(s) 741
TauI GCSGC 1 cut(s) 646
Tru1I TTAA 2 cut(s) 416, 548
Tru9I TTAA 2 cut(s) 416, 548
TscAI CASTG 3 cut(s) 144, 477, 645
TseI GCWGC 1 cut(s) 515
TspDTI ATGAA 3 cut(s) 29, 533, 735
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 3 cut(s) 144, 477, 645
XapI RAATTY 3 cut(s) 50, 131, 239
XmaI CCCGGG 1 cut(s) 176
XspI CTAG 3 cut(s) 146, 275, 512
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.