Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007724

Physical Location & Seq

Genomic Coordinates Forward (+)

33511960 .. 33515539

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G364700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCTTTCACAGAGACATACACCGTCTCGCTCTGCAACTACCATGTCTCCGGAGACTGCTCCTCCTCTCATTGCCGCCCAGCTCAACTACCTCCTTAGTCACTTCCCCCTCCTCGTTAAGATTGAGAATAAGTGGTCTGGCAGCAAATACTACCCCGGAATTCTTGACCGCTTCACCTTAGTCATTTCCTACTGTCTAGACGTTATCAAATGGGATATTATATTTGATGCAGAGTCTCCAATGGCTGCACCAGATGTTATATTTGGACCTGATGATGAAAATTTTCAGCAGTTTCTTGTATTGCGTGGTGAAGAAGAAGGGGACACAAAGTCTCCTAAGAAATTTTTGAATGATTGGAACAGCAGAGACCCTACACAGCTAATGCTTCTCATTCAAGAACTGAGGGATCAATACATGTCCTTCCAGAAGAAGCGCGTTGCAGAAGTTGATGATGACAGATTGAAGTTTGAAATTAGCACAATTGTTGCTCGTGAGGGCATTGAGATGCACATGAGTTCTGGAGTTGACAAGCCAGAGGAGGTCAAATTTTCAGTGCCTCTATTGGACATGAACATAAATAAGATGGTGCCTGGGTGTCCCTGGAAACATAAACAAAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATATGTTTCCACTCCATCAGCTCCTCGCTTGAAACTAGTATCTACAACAGAGTTGAAGAGTATATTTTCCATTGATGATGTGAAACTTCCTACATGGTTGAATGGGATGTGCATGGCTGAATATCTTCCCCATCTTGAGGAATCTCTTGAGAACCAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCCTTCAGTTTGGAAGACCGTTGGAAGCTGATCCGGTATTTTGCAGAAAGGCTACATTTCTTGCTGCTTCTGGAGTTTTCACGTTCCTGGTTCATGTTTTGATTTCAACTCAGTTTCCAAAGCAACAGCCAGAGTTGATGCTTCAAAGTTCACAGCATTTCAACTCCCAAGGTGCGCCAATCAAGTCACTGTTTCTAACTGAATACCCTTGGAGCCCAAGATGGGAAATACCATTAATGGCTGAGCGAATTTGTGACTATTTGACGGATGAGGCTTTGAACTTCAAGAGGTACTGCAATGAACCTCAACTGCAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRE

Protein Analysis

395

Amino Acids

45.41

Weight (kDa)

5.61

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42470
fragaria_vesca	FvH4_2g38390 FvH4_2g38390
malus_domestica	MD08G1012700.v1.1 MD11G1014100.v1.1 MD15G1011700.v1.1
prunus_persica	Prupe.1G364700_v2.0.a1
pyrus_communis	pycom08g01080 pycom15g01030
rosa_chinensis	RchiOBHm_Chr4g0398171 RchiOBHm_Chr6g0302911
rosa_laevigata	RLG00000011124
rosa_multiflora	Rmu_sc0000247.1_g000032 Rmu_ssc0000460.1_g000017
rosa_roxburghii	Rroxscaffold_7G00165170
rosa_rugosa	Rorug06G0318100 Rorug06G0318200
rosa_samantha	Rh6AG431700 Rh6BG208800 Rh6BG470900 Rh6CG444100 Rh6DG430900
rosa_wichuraiana	Rw4G017240 Rw6G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccII	CGCG	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	2 cut(s)	75, 169
AclWI	GGATC	2 cut(s)	414, 890
AcsI	RAATTY	5 cut(s)	159, 280, 341, 545, 1113
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	1 cut(s)	1157
AfiI	CCNNNNNNNGG	3 cut(s)	790, 814, 1087
AflIII	ACRYGT	1 cut(s)	414
AhdI	GACNNNNNGTC	1 cut(s)	328
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	4 cut(s)	589, 599, 807, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AluBI	AGCT	4 cut(s)	82, 379, 674, 893
AluI	AGCT	4 cut(s)	82, 379, 674, 893
Alw26I	GTCTC	7 cut(s)	7, 30, 47, 51, 240, 336, 360
AlwI	GGATC	2 cut(s)	414, 890
Aor13HI	TCCGGA	1 cut(s)	49
ApeKI	GCWGC	3 cut(s)	141, 245, 929
ApoI	RAATTY	5 cut(s)	159, 280, 341, 545, 1113
AseI	ATTAAT	1 cut(s)	1100
Asp700I	GAANNNNTTC	2 cut(s)	282, 777
AspLEI	GCGC	3 cut(s)	435, 849, 1042
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	166, 320
AvaII	GGWCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	1082
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	886
BbvI	GCAGC	3 cut(s)	153, 232, 916
BccI	CCATC	4 cut(s)	577, 676, 792, 1080
BciT130I	CCWGG	4 cut(s)	591, 601, 809, 953
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	7 cut(s)	7, 30, 47, 51, 240, 336, 360
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	3 cut(s)	197, 689, 1183
BfoI	RGCGCY	1 cut(s)	850
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	4 cut(s)	75, 142, 246, 930
BlpI	GCTNAGC	1 cut(s)	1107
BlsI	GCNGC	4 cut(s)	76, 143, 247, 931
Bme1390I	CCNGG	5 cut(s)	156, 591, 601, 809, 953
Bme18I	GGWCC	1 cut(s)	266
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	588, 1079
BmrFI	CCNGG	5 cut(s)	156, 591, 601, 809, 953
BmsI	GCATC	3 cut(s)	217, 495, 993
BpiI	GAAGAC	1 cut(s)	886
BpmI	CTGGAG	2 cut(s)	540, 957
Bpu1102I	GCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	2 cut(s)	809, 821
BpuMI	CCSGG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	5 cut(s)	154, 590, 599, 1033, 1073
BsaWI	WCCGGW	2 cut(s)	49, 898
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 46, 61, 76, 316, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	790, 814, 1087
Bse3DI	GCAATG	2 cut(s)	69, 1168
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	4 cut(s)	591, 601, 809, 953
BseDI	CCNNGG	5 cut(s)	154, 590, 599, 1033, 1073
BseGI	GGATG	2 cut(s)	765, 1138
BseLI	CCNNNNNNNGG	3 cut(s)	790, 814, 1087
BseMI	GCAATG	2 cut(s)	69, 1168
BseMII	CTCAG	3 cut(s)	392, 989, 1098
BseRI	GAGGAG	5 cut(s)	51, 54, 101, 551, 666
BseXI	GCAGC	3 cut(s)	153, 232, 916
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	435
BshNI	GGYRCC	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	50, 156, 899
BslFI	GGGAC	2 cut(s)	335, 582
BslI	CCNNNNNNNGG	3 cut(s)	790, 814, 1087
BsmAI	GTCTC	7 cut(s)	7, 30, 47, 51, 240, 336, 360
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	335, 582
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	1082
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	406, 895
Bsp1720I	GCTNAGC	1 cut(s)	1107
BspACI	CCGC	2 cut(s)	75, 169
BspCNI	CTCAG	3 cut(s)	393, 988, 1099
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	588, 1079
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	2 cut(s)	414, 890
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	69, 1168
BssECI	CCNNGG	5 cut(s)	154, 590, 599, 1033, 1073
BssMI	GATC	2 cut(s)	406, 895
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	1033, 1073
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	4 cut(s)	591, 601, 809, 953
Bst4CI	ACNGT	4 cut(s)	24, 194, 885, 1056
Bst6I	CTCTTC	1 cut(s)	704
BstDEI	CTNAG	6 cut(s)	95, 178, 336, 401, 975, 1107
BstF5I	GGATG	2 cut(s)	765, 1138
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	3 cut(s)	435, 849, 1042
BstKTI	GATC	2 cut(s)	409, 898
BstMAI	GTCTC	7 cut(s)	7, 30, 47, 51, 240, 336, 360
BstMBI	GATC	2 cut(s)	406, 895
BstNI	CCWGG	4 cut(s)	591, 601, 809, 953
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	5 cut(s)	154, 589, 599, 807, 951
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	153, 232, 916
BstV2I	GAAGAC	1 cut(s)	886
BtsCI	GGATG	2 cut(s)	765, 1138
BtsIMutI	CAGTG	2 cut(s)	558, 1052
BveI	ACCTGC	1 cut(s)	619
CfoI	GCGC	3 cut(s)	435, 849, 1042
Cfr13I	GGNCC	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	807
Csp6I	GTAC	1 cut(s)	1156
CviAII	CATG	7 cut(s)	43, 415, 511, 568, 747, 766, 959
CviQI	GTAC	1 cut(s)	1156
DdeI	CTNAG	6 cut(s)	95, 178, 336, 401, 975, 1107
DpnI	GATC	2 cut(s)	408, 897
DpnII	GATC	2 cut(s)	406, 895
DriI	GACNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	704
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	704
Eco130I	CCWWGG	2 cut(s)	1033, 1073
Eco24I	GRGCYC	1 cut(s)	1082
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	854
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	4 cut(s)	589, 599, 807, 951
EcoT14I	CCWWGG	2 cut(s)	1033, 1073
EcoT38I	GRGCYC	1 cut(s)	1082
ErhI	CCWWGG	2 cut(s)	1033, 1073
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	7 cut(s)	46, 418, 514, 571, 750, 769, 962
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	2 cut(s)	335, 582
FatI	CATG	7 cut(s)	42, 414, 510, 567, 746, 765, 958
Fnu4HI	GCNGC	4 cut(s)	75, 142, 246, 930
FokI	GGATG	2 cut(s)	772, 1145
FriOI	GRGCYC	1 cut(s)	1082
Fsp4HI	GCNGC	4 cut(s)	75, 142, 246, 930
FspBI	CTAG	3 cut(s)	197, 689, 1183
GlaI	GCGC	3 cut(s)	434, 848, 1041
GluI	GCNGC	4 cut(s)	75, 142, 246, 930
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	2 cut(s)	540, 957
HaeII	RGCGCY	1 cut(s)	850
HapII	CCGG	3 cut(s)	50, 156, 899
HhaI	GCGC	3 cut(s)	435, 849, 1042
Hin1II	CATG	7 cut(s)	46, 418, 514, 571, 750, 769, 962
Hin6I	GCGC	3 cut(s)	433, 847, 1040
HinP1I	GCGC	3 cut(s)	433, 847, 1040
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	233, 794
HpaII	CCGG	3 cut(s)	50, 156, 899
HphI	GGTGA	2 cut(s)	166, 320
Hpy166II	GTNNAC	2 cut(s)	526, 1016
Hpy8I	GTNNAC	2 cut(s)	526, 1016
HpyAV	CCTTC	4 cut(s)	311, 430, 837, 878
HpyCH4III	ACNGT	4 cut(s)	24, 194, 885, 1056
HpyCH4IV	ACGT	2 cut(s)	201, 947
HpyF3I	CTNAG	6 cut(s)	95, 178, 336, 401, 975, 1107
HpySE526I	ACGT	2 cut(s)	201, 947
Hsp92II	CATG	7 cut(s)	46, 418, 514, 571, 750, 769, 962
HspAI	GCGC	3 cut(s)	433, 847, 1040
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	406, 895
LmnI	GCTCC	3 cut(s)	64, 679, 1077
Lsp1109I	GCAGC	3 cut(s)	153, 232, 916
LweI	GCATC	3 cut(s)	217, 495, 993
MabI	ACCWGGT	1 cut(s)	807
MaeI	CTAG	3 cut(s)	197, 689, 1183
MaeII	ACGT	2 cut(s)	201, 947
MaeIII	GTNAC	3 cut(s)	98, 1050, 1118
MalI	GATC	2 cut(s)	408, 897
MboI	GATC	2 cut(s)	406, 895
MboII	GAAGA	6 cut(s)	323, 326, 439, 721, 770, 891
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	1082
MluCI	AATT	8 cut(s)	159, 280, 341, 471, 480, 545, 831, 1113
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	867
MroI	TCCGGA	1 cut(s)	49
MroXI	GAANNNNTTC	2 cut(s)	282, 777
MseI	TTAA	3 cut(s)	117, 830, 1100
MslI	CAYNNNNRTG	1 cut(s)	503
MspI	CCGG	3 cut(s)	50, 156, 899
MspR9I	CCNGG	5 cut(s)	156, 591, 601, 809, 953
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	4 cut(s)	591, 601, 809, 953
MvnI	CGCG	1 cut(s)	435
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	406, 895
NlaIII	CATG	7 cut(s)	46, 418, 514, 571, 750, 769, 962
NlaIV	GGNNCC	2 cut(s)	588, 1079
NmuCI	GTSAC	3 cut(s)	98, 1050, 1118
NspI	RCATGY	1 cut(s)	418
PciI	ACATGT	1 cut(s)	414
PdmI	GAANNNNTTC	2 cut(s)	282, 777
PfeI	GAWTC	1 cut(s)	794
PflMI	CCANNNNNTGG	1 cut(s)	814
PkrI	GCNGC	4 cut(s)	76, 143, 247, 931
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	1100
Psp6I	CCWGG	4 cut(s)	589, 599, 807, 951
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	4 cut(s)	589, 599, 807, 951
PspN4I	GGNNCC	2 cut(s)	588, 1079
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	1157
RsaNI	GTAC	1 cut(s)	1156
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	3 cut(s)	117, 830, 1100
SatI	GCNGC	4 cut(s)	75, 142, 246, 930
Sau3AI	GATC	2 cut(s)	406, 895
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	5 cut(s)	156, 591, 601, 809, 953
SduI	GDGCHC	1 cut(s)	1082
SexAI	ACCWGGT	1 cut(s)	807
SfaNI	GCATC	3 cut(s)	217, 495, 993
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	788, 800
SmoI	CTYRAG	2 cut(s)	788, 800
SpeI	ACTAGT	1 cut(s)	688
Sse9I	AATT	8 cut(s)	159, 280, 341, 471, 480, 545, 831, 1113
SsiI	CCGC	2 cut(s)	75, 169
SspMI	CTAG	3 cut(s)	197, 689, 1183
StyD4I	CCNGG	5 cut(s)	154, 589, 599, 807, 951
StyI	CCWWGG	2 cut(s)	1033, 1073
TaaI	ACNGT	4 cut(s)	24, 194, 885, 1056
TaiI	ACGT	2 cut(s)	204, 950
TasI	AATT	8 cut(s)	159, 280, 341, 471, 480, 545, 831, 1113
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	3 cut(s)	117, 830, 1100
Tru9I	TTAA	3 cut(s)	117, 830, 1100
TscAI	CASTG	2 cut(s)	558, 1059
TseFI	GTSAC	3 cut(s)	98, 1050, 1118
TseI	GCWGC	3 cut(s)	141, 245, 929
Tsp45I	GTSAC	3 cut(s)	98, 1050, 1118
TspDTI	ATGAA	4 cut(s)	291, 584, 947, 1179
TspGWI	ACGGA	1 cut(s)	1145
TspRI	CASTG	2 cut(s)	558, 1059
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	1100
XapI	RAATTY	5 cut(s)	159, 280, 341, 545, 1113
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	2 cut(s)	282, 777
XspI	CTAG	3 cut(s)	197, 689, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.