Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007724

Physical Location & Seq

Genomic Coordinates Forward (+)

847095 .. 849989

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01080.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCGTCGGAGAGTGTTCCGCCGCTCGTCGCCGCCCAGCTCAACTATCTCCTCACTCACTTCCCTCTCGTCGTCAAGATTGAGAACAAGTGGTCTGGCAGCAAGTACTACCCGGGATTTCTCGACCGGTTCACCATAGTCATTTCCTACTGTCTAGACGTTATCAAATGGGATGTTGTATTTGATTCGGAGTCTCCGTTCTCTGCACCCGATGTTATATTCGGACCTGATGATGAGAAATTTCAGCAGTTTCTTGTATCGCGCGATGAAGGAGAAGGGGACTCAAAGTTTCACATGAAGTGTTTGAGTGATTGGAACAGCAGAGACCCGACACAGCTTATGCTTCTCATTCATGAACTGAGGGATCAATACATGTCCTACCAGAAGAAGCGTGTTGCTGAAGTTGATGACGACAGGTTGAAGTTTGAAATTAGCACGATTGTTGCTCGCGAGGGCATTGAGATGCAGATGAGTTCCGGAGTTGACAAGCCAGAGGAGGTCAAATTTGCAGTTCCTCTATTGGACGTGAACATAAATAAGATGGTGCCTGTGTACCCCTGGAGACATCAACAGAAGATATACTTGCAGATTGTATATCCTGTTGAGAAAAAATTTGTTTCCACTCCATCAGCTCCTCGCTTGAAACTAGTGTCTACCTCAGAGTTGAAGACTCTATTTTCCATTGATGAAGTCAAACTTCCTCCATGGTTGAATGGAATGTGCATGGCTGAATATCTTCCCCATCTTGAAGAATCCCTTGAGAAACAGGTTTTGGAGGCAGTCTCCTTGGTTGATGTTAGAAGGCGCTTCATCGAGGCATTAGCCCTTCAGTTTGGAAGACCAGTGGAAGCTGATTCGGTCTTATGCAGAAAGGCAACGTTCCTTGCCGCTTCTGGAGTTTTCACGTTCCTGGTTCATGTTTCGATTTCAACTCAGTTTCCAAAGCAAAGACCTTCTTTGATGCTTCAAAGTTCACAGCATTTCAACCACCAAGGTGTGCCGATCAAGTCACTTCCTCTAACGGAATTTCCTTGGAGCCCTAGATGGGAATTACCTCATATGGCCGAGCGAATTTGCGACTATTTGACAGACGAGGCTGTGAACTTCAAGAAGCACTGCAACGAGCCTCCACCGCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRE

Protein Analysis

381

Amino Acids

43.81

Weight (kDa)

5.81

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42470
fragaria_vesca	FvH4_2g38390 FvH4_2g38390
malus_domestica	MD08G1012700.v1.1 MD11G1014100.v1.1 MD15G1011700.v1.1
prunus_persica	Prupe.1G364700_v2.0.a1
pyrus_communis	pycom08g01080 pycom15g01030
rosa_chinensis	RchiOBHm_Chr4g0398171 RchiOBHm_Chr6g0302911
rosa_laevigata	RLG00000011124
rosa_multiflora	Rmu_sc0000247.1_g000032 Rmu_ssc0000460.1_g000017
rosa_roxburghii	Rroxscaffold_7G00165170
rosa_rugosa	Rorug06G0318100 Rorug06G0318200
rosa_samantha	Rh6AG431700 Rh6BG208800 Rh6BG470900 Rh6CG444100 Rh6DG430900
rosa_wichuraiana	Rw4G017240 Rw6G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	3 cut(s)	262, 264, 450
AccIII	TCCGGA	1 cut(s)	476
AciI	CCGC	5 cut(s)	20, 23, 33, 888, 1133
AclI	AACGTT	1 cut(s)	878
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	1062
AcsI	RAATTY	5 cut(s)	239, 503, 611, 1025, 1071
AcuI	CTGAAG	2 cut(s)	420, 812
AfaI	GTAC	2 cut(s)	107, 554
AfiI	CCNNNNNNNGG	1 cut(s)	1045
AflIII	ACRYGT	1 cut(s)	372
AgeI	ACCGGT	1 cut(s)	126
AhlI	ACTAGT	1 cut(s)	646
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	557, 909
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AleI	CACNNNNGTG	1 cut(s)	993
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	40, 337, 632, 851
AluI	AGCT	4 cut(s)	40, 337, 632, 851
Alw26I	GTCTC	4 cut(s)	198, 318, 556, 787
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	476
AoxI	GGCC	1 cut(s)	1062
ApeKI	GCWGC	2 cut(s)	99, 1135
ApoI	RAATTY	5 cut(s)	239, 503, 611, 1025, 1071
AsiGI	ACCGGT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	264, 807
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	2 cut(s)	113, 114
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	1040
BbsI	GAAGAC	2 cut(s)	674, 844
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	4 cut(s)	535, 634, 750, 1038
BciT130I	CCWGG	2 cut(s)	559, 911
BcnI	CCSGG	2 cut(s)	113, 114
BcoDI	GTCTC	4 cut(s)	198, 318, 556, 787
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	4 cut(s)	155, 647, 1041, 1141
BfoI	RGCGCY	1 cut(s)	808
BisI	GCNGC	5 cut(s)	23, 33, 100, 888, 1136
BlsI	GCNGC	5 cut(s)	24, 34, 101, 889, 1137
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	4 cut(s)	113, 114, 559, 911
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	546, 1037
BmrFI	CCNGG	4 cut(s)	113, 114, 559, 911
BmsI	GCATC	2 cut(s)	453, 951
BpiI	GAAGAC	2 cut(s)	674, 844
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BpmI	CTGGAG	2 cut(s)	580, 915
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	2 cut(s)	113, 114
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	6 cut(s)	112, 557, 704, 786, 991, 1031
BsaWI	WCCGGW	2 cut(s)	126, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	1045
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	842
BseAI	TCCGGA	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	559, 911
BseDI	CCNNGG	6 cut(s)	112, 557, 704, 786, 991, 1031
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	1045
BseMII	CTCAG	3 cut(s)	350, 672, 947
BseNI	ACTGG	1 cut(s)	842
BseRI	GAGGAG	3 cut(s)	41, 509, 624
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	3 cut(s)	262, 264, 450
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	1064
BshNI	GGYRCC	1 cut(s)	544
BshTI	ACCGGT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	113, 127, 477
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	1045
BsmAI	GTCTC	4 cut(s)	198, 318, 556, 787
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	1064
Bso31I	GGTCTC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	1040
Bsp13I	TCCGGA	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	364, 1002
Bsp19I	CCATGG	1 cut(s)	704
Bsp68I	TCGCGA	1 cut(s)	450
BspACI	CCGC	5 cut(s)	20, 23, 33, 888, 1133
BspANI	GGCC	1 cut(s)	1064
BspCNI	CTCAG	3 cut(s)	351, 671, 946
BspEI	TCCGGA	1 cut(s)	476
BspFNI	CGCG	3 cut(s)	262, 264, 450
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	546, 1037
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	544
BspTNI	GGTCTC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	842
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	6 cut(s)	112, 557, 704, 786, 991, 1031
BssMI	GATC	2 cut(s)	364, 1002
BssT1I	CCWWGG	4 cut(s)	704, 786, 991, 1031
Bst2UI	CCWGG	2 cut(s)	559, 911
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	3 cut(s)	359, 658, 933
BstDSI	CCRYGG	1 cut(s)	704
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	3 cut(s)	262, 264, 450
BstH2I	RGCGCY	1 cut(s)	808
BstHHI	GCGC	2 cut(s)	264, 807
BstKTI	GATC	2 cut(s)	367, 1005
BstMAI	GTCTC	4 cut(s)	198, 318, 556, 787
BstMBI	GATC	2 cut(s)	364, 1002
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	1132
BstNI	CCWGG	2 cut(s)	559, 911
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	4 cut(s)	111, 112, 557, 909
BstUI	CGCG	3 cut(s)	262, 264, 450
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	2 cut(s)	674, 844
BsuRI	GGCC	1 cut(s)	1064
BtgI	CCRYGG	1 cut(s)	704
BtgZI	GCGATG	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	1114
BtsIMutI	CAGTG	2 cut(s)	849, 1114
BtuMI	TCGCGA	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	448
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	2 cut(s)	264, 807
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	224
Cfr9I	CCCGGG	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	106, 553
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	6 cut(s)	295, 353, 373, 705, 724, 917
CviQI	GTAC	2 cut(s)	106, 553
DdeI	CTNAG	3 cut(s)	359, 658, 933
DpnI	GATC	2 cut(s)	366, 1004
DpnII	GATC	2 cut(s)	364, 1002
EaeI	YGGCCR	1 cut(s)	1062
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	4 cut(s)	704, 786, 991, 1031
Eco24I	GRGCYC	1 cut(s)	1040
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	420, 812
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	557, 909
EcoT14I	CCWWGG	4 cut(s)	704, 786, 991, 1031
EcoT38I	GRGCYC	1 cut(s)	1040
ErhI	CCWWGG	4 cut(s)	704, 786, 991, 1031
FaeI	CATG	6 cut(s)	298, 356, 376, 708, 727, 920
FalI	AAGNNNNNCTT	8 cut(s)	566, 598, 681, 713, 741, 773, 940, 972
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	6 cut(s)	294, 352, 372, 704, 723, 916
FauNDI	CATATG	1 cut(s)	1059
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	5 cut(s)	23, 33, 100, 888, 1136
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	1040
Fsp4HI	GCNGC	5 cut(s)	23, 33, 100, 888, 1136
FspBI	CTAG	4 cut(s)	155, 647, 1041, 1141
GlaI	GCGC	2 cut(s)	263, 806
GluI	GCNGC	5 cut(s)	23, 33, 100, 888, 1136
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	580, 915
HaeII	RGCGCY	1 cut(s)	808
HaeIII	GGCC	1 cut(s)	1064
HapII	CCGG	3 cut(s)	113, 127, 477
HhaI	GCGC	2 cut(s)	264, 807
Hin1II	CATG	6 cut(s)	298, 356, 376, 708, 727, 920
Hin6I	GCGC	2 cut(s)	262, 805
HinP1I	GCGC	2 cut(s)	262, 805
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	6 cut(s)	185, 191, 281, 670, 752, 854
HpaII	CCGG	3 cut(s)	113, 127, 477
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	7 cut(s)	132, 484, 529, 553, 654, 974, 1102
Hpy188I	TCNGA	4 cut(s)	10, 190, 224, 661
Hpy188III	TCNNGA	9 cut(s)	76, 122, 155, 353, 449, 477, 746, 894, 1108
Hpy8I	GTNNAC	7 cut(s)	132, 484, 529, 553, 654, 974, 1102
Hpy99I	CGWCG	3 cut(s)	10, 32, 74
HpyAV	CCTTC	5 cut(s)	263, 269, 795, 836, 963
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	4 cut(s)	159, 525, 878, 905
HpyCH4V	TGCA	7 cut(s)	206, 466, 509, 586, 723, 867, 1119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1132
HpyF3I	CTNAG	3 cut(s)	359, 658, 933
HpySE526I	ACGT	4 cut(s)	159, 525, 878, 905
Hsp92II	CATG	6 cut(s)	298, 356, 376, 708, 727, 920
HspAI	GCGC	2 cut(s)	262, 805
Kpn2I	TCCGGA	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	364, 1002
LmnI	GCTCC	2 cut(s)	637, 1035
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	453, 951
MaeI	CTAG	4 cut(s)	155, 647, 1041, 1141
MaeII	ACGT	4 cut(s)	159, 525, 878, 905
MaeIII	GTNAC	1 cut(s)	1008
MalI	GATC	2 cut(s)	366, 1004
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	2 cut(s)	364, 1002
MboII	GAAGA	6 cut(s)	397, 586, 679, 728, 761, 849
MhlI	GDGCHC	1 cut(s)	1040
MluCI	AATT	7 cut(s)	239, 429, 503, 611, 1025, 1049, 1071
MlyI	GAGTC	3 cut(s)	200, 275, 664
MroI	TCCGGA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	735
MslI	CAYNNNNRTG	2 cut(s)	461, 993
MspI	CCGG	3 cut(s)	113, 127, 477
MspR9I	CCNGG	4 cut(s)	113, 114, 559, 911
MvaI	CCWGG	2 cut(s)	559, 911
MvnI	CGCG	3 cut(s)	262, 264, 450
MwoI	GCNNNNNNNGC	1 cut(s)	1132
NciI	CCSGG	2 cut(s)	113, 114
NcoI	CCATGG	1 cut(s)	704
NdeI	CATATG	1 cut(s)	1059
NdeII	GATC	2 cut(s)	364, 1002
NlaIII	CATG	6 cut(s)	298, 356, 376, 708, 727, 920
NlaIV	GGNNCC	2 cut(s)	546, 1037
NmeAIII	GCCGAG	1 cut(s)	1090
NmuCI	GTSAC	1 cut(s)	1008
NruI	TCGCGA	1 cut(s)	450
NspI	RCATGY	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	993
PagI	TCATGA	1 cut(s)	352
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	185, 752, 854
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	5 cut(s)	24, 34, 101, 889, 1137
PleI	GAGTC	3 cut(s)	199, 275, 664
PpsI	GAGTC	3 cut(s)	199, 275, 664
PscI	ACATGT	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	878
Psp6I	CCWGG	2 cut(s)	557, 909
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	2 cut(s)	557, 909
PspN4I	GGNNCC	2 cut(s)	546, 1037
PspPI	GGNCC	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	450
RsaI	GTAC	2 cut(s)	107, 554
RsaNI	GTAC	2 cut(s)	106, 553
RseI	CAYNNNNRTG	2 cut(s)	461, 993
SatI	GCNGC	5 cut(s)	23, 33, 100, 888, 1136
Sau3AI	GATC	2 cut(s)	364, 1002
Sau96I	GGNCC	1 cut(s)	224
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	3 cut(s)	200, 275, 664
ScrFI	CCNGG	4 cut(s)	113, 114, 559, 911
SduI	GDGCHC	1 cut(s)	1040
SfaNI	GCATC	2 cut(s)	453, 951
SinI	GGWCC	1 cut(s)	224
SmaI	CCCGGG	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	461, 993
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SpeI	ACTAGT	1 cut(s)	646
Sse9I	AATT	7 cut(s)	239, 429, 503, 611, 1025, 1049, 1071
SsiI	CCGC	5 cut(s)	20, 23, 33, 888, 1133
SspMI	CTAG	4 cut(s)	155, 647, 1041, 1141
StyD4I	CCNGG	4 cut(s)	111, 112, 557, 909
StyI	CCWWGG	4 cut(s)	704, 786, 991, 1031
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	4 cut(s)	162, 528, 881, 908
TaqI	TCGA	3 cut(s)	123, 813, 923
TaqII	GACCGA	1 cut(s)	847
TasI	AATT	7 cut(s)	239, 429, 503, 611, 1025, 1049, 1071
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	3 cut(s)	25, 35, 890
TfiI	GAWTC	3 cut(s)	185, 752, 854
TscAI	CASTG	2 cut(s)	849, 1121
TseFI	GTSAC	1 cut(s)	1008
TseI	GCWGC	2 cut(s)	99, 1135
Tsp45I	GTSAC	1 cut(s)	1008
TspDTI	ATGAA	7 cut(s)	282, 311, 341, 369, 702, 799, 905
TspGWI	ACGGA	2 cut(s)	186, 1037
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	2 cut(s)	849, 1121
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	5 cut(s)	239, 503, 611, 1025, 1071
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	376
XmaI	CCCGGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	155, 647, 1041, 1141
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.