RLG00000011124

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007724
Physical Location & Seq
Forward (+)
7001262 .. 7004421
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011124

Sequence Viewer

Length: 891 bp
ATGTCTTCAGAGAGCTCTCCTCCTCTGATTGCAGCTCAGCTCAATCACCTCGCTCTTCACTTCCCTCTTCTCGCTAAGATTGAGCCTAAGTGGTCTGGTAGCAAAGACTACAGCGGAGTTCTTGATCGGTTTACCTTGGCCATTGCCTACTGTCTAGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCGGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTCCTTGTATTGCATGGTGAAGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGGCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGCATTTCAACCCCCAAGGTGTGCCTATCAAATCACTACCGCTGACTGATTATCCATTTAGCCCAAGATGGGAAGCATCGCTAATGGCTGAACGAATATGGGACTTTTTGGCCGATGAAGCCTTGATCTTCAAGAAGTACTGCAACGAGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

297

Amino Acids

33.96

Weight (kDa)

5.0

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 37 - 168 1.1e-19 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 543
AccII CGCG 1 cut(s) 408
AciI CCGC 4 cut(s) 114, 188, 406, 773
AclI AACGTT 1 cut(s) 701
AclWI GGATC 2 cut(s) 266, 671
AcoI YGGCCR 3 cut(s) 138, 537, 843
AcsI RAATTY 2 cut(s) 413, 494
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 872
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 5 cut(s) 344, 398, 419, 742, 865
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 6 cut(s) 15, 35, 40, 328, 674, 710
AluI AGCT 6 cut(s) 15, 35, 40, 328, 674, 710
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 285, 309
AlwI GGATC 2 cut(s) 266, 671
AoxI GGCC 4 cut(s) 138, 366, 537, 843
ApeKI GCWGC 3 cut(s) 32, 325, 710
ApoI RAATTY 2 cut(s) 413, 494
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 2 cut(s) 38, 278
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 2 cut(s) 507, 548
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 44, 337, 697
BccI CCATC 1 cut(s) 795
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 1 cut(s) 550
BciVI GTATCC 1 cut(s) 204
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 285, 309
BfaI CTAG 3 cut(s) 155, 509, 707
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 631
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 3 cut(s) 33, 326, 711
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 3 cut(s) 34, 327, 712
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 2 cut(s) 541, 550
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 545
BmrFI CCNGG 2 cut(s) 541, 550
BmsI GCATC 3 cut(s) 175, 444, 818
BpiI GAAGAC 1 cut(s) 667
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 541
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 135, 548, 748
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse1I ACTGG 1 cut(s) 665
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 3 cut(s) 135, 548, 748
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 50, 341
BseNI ACTGG 1 cut(s) 665
BseRI GAGGAG 3 cut(s) 9, 12, 500
BseSI GKGCMC 2 cut(s) 507, 548
BseXI GCAGC 3 cut(s) 44, 337, 697
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 140, 368, 539, 845
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 209, 540
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 1 cut(s) 802
BsmAI GTCTC 2 cut(s) 285, 309
BsmFI GGGAC 1 cut(s) 848
BsnI GGCC 4 cut(s) 140, 368, 539, 845
Bso31I GGTCTC 1 cut(s) 309
Bsp1286I GDGCHC 3 cut(s) 17, 507, 548
Bsp143I GATC 6 cut(s) 124, 271, 355, 676, 681, 858
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 4 cut(s) 114, 188, 406, 773
BspANI GGCC 4 cut(s) 140, 368, 539, 845
BspCNI CTCAG 2 cut(s) 49, 342
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 545
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 266, 671
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 543
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 665
BssECI CCNNGG 3 cut(s) 135, 548, 748
BssMI GATC 6 cut(s) 124, 271, 355, 676, 681, 858
BssT1I CCWWGG 2 cut(s) 135, 748
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 2 cut(s) 152, 293
Bst6I CTCTTC 2 cut(s) 60, 72
BstAPI GCANNNNNTGC 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 36, 75, 87, 350
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 631
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 6 cut(s) 127, 274, 358, 679, 684, 861
BstMAI GTCTC 2 cut(s) 285, 309
BstMBI GATC 6 cut(s) 124, 271, 355, 676, 681, 858
BstMWI GCNNNNNNNGC 2 cut(s) 331, 851
BstNI CCWGG 1 cut(s) 550
BstSCI CCNGG 2 cut(s) 539, 548
BstSFI CTRYAG 1 cut(s) 109
BstSLI GKGCMC 2 cut(s) 507, 548
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 44, 337, 697
BstV2I GAAGAC 1 cut(s) 667
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 4 cut(s) 140, 368, 539, 845
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 507, 672
BveI ACCTGC 1 cut(s) 568
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 871
CviAII CATG 4 cut(s) 263, 286, 331, 364
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 4 cut(s) 36, 75, 87, 350
DpnI GATC 6 cut(s) 126, 273, 357, 678, 683, 860
DpnII GATC 6 cut(s) 124, 271, 355, 676, 681, 858
EaeI YGGCCR 3 cut(s) 138, 537, 843
Eam1104I CTCTTC 2 cut(s) 60, 72
EarI CTCTTC 2 cut(s) 60, 72
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 135, 748
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 2 cut(s) 135, 748
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 135, 748
FaeI CATG 4 cut(s) 266, 289, 334, 367
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 1 cut(s) 848
FatI CATG 4 cut(s) 262, 285, 330, 363
Fnu4HI GCNGC 3 cut(s) 33, 326, 711
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 33, 326, 711
FspBI CTAG 3 cut(s) 155, 509, 707
GlaI GCGC 1 cut(s) 629
GluI GCNGC 3 cut(s) 33, 326, 711
GsuI CTGGAG 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 631
HaeIII GGCC 4 cut(s) 140, 368, 539, 845
HapII CCGG 2 cut(s) 209, 540
HhaI GCGC 1 cut(s) 630
Hin1II CATG 4 cut(s) 266, 289, 334, 367
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HpaII CCGG 2 cut(s) 209, 540
HphI GGTGA 2 cut(s) 38, 278
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 6 cut(s) 10, 27, 198, 224, 276, 681
Hpy188III TCNNGA 8 cut(s) 122, 155, 344, 398, 440, 468, 717, 865
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 2 cut(s) 152, 293
HpyCH4IV ACGT 1 cut(s) 701
HpyCH4V TGCA 9 cut(s) 32, 206, 262, 457, 500, 577, 690, 736, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 851
HpyF3I CTNAG 4 cut(s) 36, 75, 87, 350
HpySE526I ACGT 1 cut(s) 701
Hsp92II CATG 4 cut(s) 266, 289, 334, 367
HspAI GCGC 1 cut(s) 628
Kzo9I GATC 6 cut(s) 124, 271, 355, 676, 681, 858
LguI GCTCTTC 1 cut(s) 60
Lsp1109I GCAGC 3 cut(s) 44, 337, 697
LweI GCATC 3 cut(s) 175, 444, 818
MaeI CTAG 3 cut(s) 155, 509, 707
MaeII ACGT 1 cut(s) 701
MalI GATC 6 cut(s) 126, 273, 357, 678, 683, 860
MboI GATC 6 cut(s) 124, 271, 355, 676, 681, 858
MboII GAAGA 7 cut(s) 47, 59, 242, 281, 577, 672, 853
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 17, 507, 548
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 6 cut(s) 413, 420, 429, 447, 494, 612
MluNI TGGCCA 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 114, 775
MspI CCGG 2 cut(s) 209, 540
MspR9I CCNGG 2 cut(s) 541, 550
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 550
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 331, 851
NciI CCSGG 1 cut(s) 541
NdeII GATC 6 cut(s) 124, 271, 355, 676, 681, 858
NlaIII CATG 4 cut(s) 266, 289, 334, 367
NlaIV GGNNCC 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 3 cut(s) 34, 327, 712
Psp124BI GAGCTC 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 1 cut(s) 545
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 611
SatI GCNGC 3 cut(s) 33, 326, 711
Sau3AI GATC 6 cut(s) 124, 271, 355, 676, 681, 858
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 541, 550
SduI GDGCHC 3 cut(s) 17, 507, 548
SfaNI GCATC 3 cut(s) 175, 444, 818
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 6 cut(s) 413, 420, 429, 447, 494, 612
SsiI CCGC 4 cut(s) 114, 188, 406, 773
SspMI CTAG 3 cut(s) 155, 509, 707
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 539, 548
StyI CCWWGG 2 cut(s) 135, 748
TaaI ACNGT 2 cut(s) 152, 293
TaiI ACGT 1 cut(s) 704
TasI AATT 6 cut(s) 413, 420, 429, 447, 494, 612
TatI WGTACW 1 cut(s) 870
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 2 cut(s) 507, 672
TseI GCWGC 3 cut(s) 32, 325, 710
TspDTI ATGAA 4 cut(s) 249, 302, 392, 864
TspRI CASTG 2 cut(s) 507, 672
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 413, 494
XbaI TCTAGA 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 155, 509, 707
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.