Rh6AG431700

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007724
Physical Location & Seq
Reverse (-)
62201973 .. 62205556
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG431700.1

Sequence Viewer

Length: 807 bp
ATGTCTGCACCGGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTCAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGATCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATATGTTTCCACCCCATCAGCTCCTCGTTTGAAACTAGTAGCTACTCCAGACTTGAAGACACTATTTTCTATAGATGATGTCAAACTTCCTACATGGTTGACGGGGATGTGCATGGCTGAATATCTCCCACCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGACAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGGCAAGGATATTCTCCTCCCAACCTGTAGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

268

Amino Acids

30.54

Weight (kDa)

5.24

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 3 - 255 2.5e-22 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 2 cut(s) 337, 345
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 743
AclI AACGTT 1 cut(s) 671
AclWI GGATC 2 cut(s) 68, 641
AcsI RAATTY 2 cut(s) 215, 296
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 774
AgsI TTSAA 8 cut(s) 146, 200, 221, 436, 460, 542, 554, 761
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 3 cut(s) 350, 702, 768
AluBI AGCT 6 cut(s) 130, 425, 446, 644, 680, 749
AluI AGCT 6 cut(s) 130, 425, 446, 644, 680, 749
Alw26I GTCTC 3 cut(s) 87, 111, 539
AlwI GGATC 2 cut(s) 68, 641
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 127, 680
ApoI RAATTY 2 cut(s) 215, 296
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 2 cut(s) 342, 343
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 3 cut(s) 309, 342, 350
BanI GGYRCC 2 cut(s) 337, 345
BbsI GAAGAC 2 cut(s) 467, 637
BbvI GCAGC 2 cut(s) 139, 667
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 602
BciT130I CCWGG 3 cut(s) 352, 704, 770
BcnI CCSGG 2 cut(s) 342, 343
BcoDI GTCTC 3 cut(s) 87, 111, 539
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 3 cut(s) 311, 440, 677
BfmI CTRYAG 3 cut(s) 474, 750, 795
BfoI RGCGCY 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 2 cut(s) 128, 681
BlsI GCNGC 2 cut(s) 129, 682
Bme1390I CCNGG 5 cut(s) 342, 343, 352, 704, 770
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 339, 347
BmrFI CCNGG 5 cut(s) 342, 343, 352, 704, 770
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 2 cut(s) 467, 637
BpmI CTGGAG 2 cut(s) 435, 708
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 342, 343
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 341, 350, 768
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse1I ACTGG 1 cut(s) 635
BseBI CCWGG 3 cut(s) 352, 704, 770
BseDI CCNNGG 3 cut(s) 341, 350, 768
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 166, 740
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 3 cut(s) 302, 417, 775
BseSI GKGCMC 3 cut(s) 309, 342, 350
BseXI GCAGC 2 cut(s) 139, 667
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 2 cut(s) 337, 345
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 11, 342
BslI CCNNNNNNNGG 1 cut(s) 774
BsmAI GTCTC 3 cut(s) 87, 111, 539
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 309, 342, 350
Bsp143I GATC 5 cut(s) 73, 157, 205, 646, 651
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 165, 739
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 339, 347
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 68, 641
BspT107I GGYRCC 2 cut(s) 337, 345
BspTNI GGTCTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 3 cut(s) 341, 350, 768
BssMI GATC 5 cut(s) 73, 157, 205, 646, 651
Bst2UI CCWGG 3 cut(s) 352, 704, 770
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 2 cut(s) 152, 726
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 5 cut(s) 76, 160, 208, 649, 654
BstMAI GTCTC 3 cut(s) 87, 111, 539
BstMBI GATC 5 cut(s) 73, 157, 205, 646, 651
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 3 cut(s) 352, 704, 770
BstSCI CCNGG 5 cut(s) 340, 341, 350, 702, 768
BstSFI CTRYAG 3 cut(s) 474, 750, 795
BstSLI GKGCMC 3 cut(s) 309, 342, 350
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 139, 667
BstV2I GAAGAC 2 cut(s) 467, 637
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 309, 642
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 747
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 26
Cfr9I CCCGGG 1 cut(s) 341
CviAII CATG 6 cut(s) 65, 88, 133, 166, 498, 517
DdeI CTNAG 2 cut(s) 152, 726
DpnI GATC 5 cut(s) 75, 159, 207, 648, 653
DpnII GATC 5 cut(s) 73, 157, 205, 646, 651
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 350, 702, 768
FaeI CATG 6 cut(s) 68, 91, 136, 169, 501, 520
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 534, 566
FatI CATG 6 cut(s) 64, 87, 132, 165, 497, 516
Fnu4HI GCNGC 2 cut(s) 128, 681
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 128, 681
FspBI CTAG 3 cut(s) 311, 440, 677
GlaI GCGC 1 cut(s) 599
GluI GCNGC 2 cut(s) 128, 681
GsuI CTGGAG 2 cut(s) 435, 708
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 11, 342
HhaI GCGC 1 cut(s) 600
Hin1II CATG 6 cut(s) 68, 91, 136, 169, 501, 520
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 1 cut(s) 547
HpaII CCGG 2 cut(s) 11, 342
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 4 cut(s) 26, 78, 155, 651
Hpy188III TCNNGA 8 cut(s) 146, 200, 242, 270, 452, 539, 551, 687
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 671
HpyCH4V TGCA 7 cut(s) 8, 64, 259, 302, 379, 516, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 152, 726
HpySE526I ACGT 1 cut(s) 671
Hsp92II CATG 6 cut(s) 68, 91, 136, 169, 501, 520
HspAI GCGC 1 cut(s) 598
Kzo9I GATC 5 cut(s) 73, 157, 205, 646, 651
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 139, 667
LweI GCATC 1 cut(s) 246
MaeI CTAG 3 cut(s) 311, 440, 677
MaeII ACGT 1 cut(s) 671
MalI GATC 5 cut(s) 75, 159, 207, 648, 653
MboI GATC 5 cut(s) 73, 157, 205, 646, 651
MboII GAAGA 6 cut(s) 44, 83, 379, 472, 554, 642
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 309, 342, 350
MluCI AATT 7 cut(s) 215, 222, 231, 249, 296, 582, 717
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 9 cut(s) 187, 238, 280, 283, 438, 546, 562, 601, 796
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 581, 713
MspI CCGG 2 cut(s) 11, 342
MspR9I CCNGG 5 cut(s) 342, 343, 352, 704, 770
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 3 cut(s) 352, 704, 770
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 133
NciI CCSGG 2 cut(s) 342, 343
NdeII GATC 5 cut(s) 73, 157, 205, 646, 651
NlaIII CATG 6 cut(s) 68, 91, 136, 169, 501, 520
NlaIV GGNNCC 2 cut(s) 339, 347
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 129, 682
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 671
Psp6I CCWGG 3 cut(s) 350, 702, 768
PspGI CCWGG 3 cut(s) 350, 702, 768
PspN4I GGNNCC 2 cut(s) 339, 347
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 73
SaqAI TTAA 2 cut(s) 581, 713
SatI GCNGC 2 cut(s) 128, 681
Sau3AI GATC 5 cut(s) 73, 157, 205, 646, 651
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 5 cut(s) 342, 343, 352, 704, 770
SduI GDGCHC 3 cut(s) 309, 342, 350
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 3 cut(s) 474, 750, 795
SinI GGWCC 1 cut(s) 26
SmaI CCCGGG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 7 cut(s) 215, 222, 231, 249, 296, 582, 717
SsiI CCGC 1 cut(s) 743
SspMI CTAG 3 cut(s) 311, 440, 677
StyD4I CCNGG 5 cut(s) 340, 341, 350, 702, 768
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 674
TasI AATT 7 cut(s) 215, 222, 231, 249, 296, 582, 717
Tru1I TTAA 2 cut(s) 581, 713
Tru9I TTAA 2 cut(s) 581, 713
TscAI CASTG 2 cut(s) 309, 642
TseI GCWGC 2 cut(s) 127, 680
TspDTI ATGAA 4 cut(s) 51, 104, 194, 698
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 2 cut(s) 309, 642
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 2 cut(s) 215, 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 311, 440, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.