FvH4_2g38390

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007724
Physical Location & Seq
Forward (+)
27788300 .. 27791953
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38390.t1

Sequence Viewer

Length: 1125 bp
ATGGCTTCAGAGACCTCTCCTCCTCTGATTGCAGCTCAGCTCAACCACCTGGTTCTCAACTTCCCTCTTCTCGCGAAGATTGAGCCTAAGTGGTCTGGTAGCAAAGACTACGGCGGAGTTCTTGATCGGTTTACTTTAGTCATTTCTTACTGTCTGGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCGCCGGATTTTATATTCGGACCTGAGGATGAAAGTTTTCAGCGGTTTCTTGTGTTGCATGGTGAAGATCCAAAGTCTCCGTTGAACTGTTTGGGTGATTGGGATAGTCAAGATCCTACGCAGCTGATGCTTCTTGTTAAGGAGCTGAGGGATCAATACATGGCCTACCAGAAGAAGCTTGTTGGAGAGGTTCAAGATGACCGCGTCAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCAGTTGAGTTCCGGATTCGATAAGCCAGCGGAGGTCAAATTTGCAGTGCCACTAGTAGATACAAACATTAACAAAATGGTGCCTGGATGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATATGTTTCTACTCCATCAGCTCCTCGTTTAAAACTAGTAGCTACCCCAGACTTGAAGACTCTATTTTCCATAGATGATATCAAACTACCAACATGGTTGGCGGGGATGTGCATGGCCGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAATTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAATTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTATATCTGCTTCTGGAGTTTTCACATTCATGGTTCACTTGACGATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAATGCTTCAAAGTTGCCAGCATTTCAACTCCCAAGGTGTGCCACTCAAATCGGTGTCGCTGACTGATTATCCTTTTAGCCCAAGATGGGAAGCATCGCTAATGGCTGAACGAATATGGGACTTTTTGGCGGATGAAGCCTTGATCTTCAAGAAGTACTGCAATGAGCGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

375

Amino Acids

42.66

Weight (kDa)

5.09

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 39 - 325 1.2e-36 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 535
AccBSI CCGCTC 1 cut(s) 1117
AccII CGCG 2 cut(s) 74, 408
AccIII TCCGGA 1 cut(s) 467
AciI CCGC 9 cut(s) 114, 188, 247, 406, 485, 704, 941, 1079, 1117
AclI AACGTT 1 cut(s) 869
AclWI GGATC 4 cut(s) 266, 311, 363, 839
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 2 cut(s) 413, 494
AfaI GTAC 1 cut(s) 1106
AfiI CCNNNNNNNGG 1 cut(s) 1036
AhlI ACTAGT 2 cut(s) 508, 637
AjnI CCWGG 3 cut(s) 48, 538, 548
AluBI AGCT 9 cut(s) 35, 40, 328, 349, 382, 623, 644, 842, 947
AluI AGCT 9 cut(s) 35, 40, 328, 349, 382, 623, 644, 842, 947
Alw26I GTCTC 3 cut(s) 5, 285, 737
AlwI GGATC 4 cut(s) 266, 311, 363, 839
Aor13HI TCCGGA 1 cut(s) 467
AoxI GGCC 2 cut(s) 366, 717
ApeKI GCWGC 2 cut(s) 32, 325
ApoI RAATTY 2 cut(s) 413, 494
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 208, 798
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 278, 311
AvaII GGWCC 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 665, 835
BbvCI CCTCAGC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 44, 337
BccI CCATC 2 cut(s) 625, 1029
BceAI ACGGC 2 cut(s) 127, 800
BciT130I CCWGG 3 cut(s) 50, 540, 550
BciVI GTATCC 1 cut(s) 204
BcoDI GTCTC 3 cut(s) 5, 285, 737
BcuI ACTAGT 2 cut(s) 508, 637
BfaI CTAG 2 cut(s) 509, 638
BfoI RGCGCY 1 cut(s) 799
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 2 cut(s) 33, 326
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 2 cut(s) 34, 327
BmcAI AGTACT 1 cut(s) 1106
Bme1390I CCNGG 3 cut(s) 50, 540, 550
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 3 cut(s) 50, 540, 550
BmsI GCATC 5 cut(s) 175, 321, 444, 533, 1052
BpiI GAAGAC 2 cut(s) 665, 835
BpmI CTGGAG 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 548, 982
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 1036
Bse1I ACTGG 1 cut(s) 833
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 1117
BseAI TCCGGA 1 cut(s) 467
BseBI CCWGG 3 cut(s) 50, 540, 550
BseDI CCNNGG 2 cut(s) 548, 982
BseGI GGATG 5 cut(s) 178, 238, 548, 714, 1087
BseLI CCNNNNNNNGG 1 cut(s) 1036
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 4 cut(s) 50, 219, 341, 938
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 3 cut(s) 9, 12, 615
BseXI GCAGC 2 cut(s) 44, 337
Bsh1236I CGCG 2 cut(s) 74, 408
BshFI GGCC 2 cut(s) 368, 719
BshNI GGYRCC 1 cut(s) 535
BsiSI CCGG 2 cut(s) 209, 468
BslFI GGGAC 1 cut(s) 1082
BslI CCNNNNNNNGG 1 cut(s) 1036
BsmAI GTCTC 3 cut(s) 5, 285, 737
BsmFI GGGAC 1 cut(s) 1082
BsnI GGCC 2 cut(s) 368, 719
Bso31I GGTCTC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 467
Bsp143I GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
Bsp1720I GCTNAGC 1 cut(s) 36
Bsp68I TCGCGA 1 cut(s) 74
BspACI CCGC 9 cut(s) 114, 188, 247, 406, 485, 704, 941, 1079, 1117
BspANI GGCC 2 cut(s) 368, 719
BspCNI CTCAG 4 cut(s) 49, 220, 342, 937
BspEI TCCGGA 1 cut(s) 467
BspFNI CGCG 2 cut(s) 74, 408
BspLI GGNNCC 1 cut(s) 537
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 4 cut(s) 266, 311, 363, 839
BspT107I GGYRCC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 1117
BsrDI GCAATG 1 cut(s) 1117
BsrI ACTGG 1 cut(s) 833
BssECI CCNNGG 2 cut(s) 548, 982
BssMI GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
BssT1I CCWWGG 1 cut(s) 982
Bst2UI CCWGG 3 cut(s) 50, 540, 550
Bst4CI ACNGT 2 cut(s) 152, 293
Bst6I CTCTTC 2 cut(s) 72, 735
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 483, 945, 968
BstDEI CTNAG 5 cut(s) 36, 87, 228, 350, 924
BstF5I GGATG 5 cut(s) 178, 238, 548, 714, 1087
BstFNI CGCG 2 cut(s) 74, 408
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 2 cut(s) 208, 798
BstKTI GATC 7 cut(s) 127, 274, 319, 358, 847, 852, 1095
BstMAI GTCTC 3 cut(s) 5, 285, 737
BstMBI GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
BstMWI GCNNNNNNNGC 2 cut(s) 331, 1085
BstNI CCWGG 3 cut(s) 50, 540, 550
BstSCI CCNGG 3 cut(s) 48, 538, 548
BstUI CGCG 2 cut(s) 74, 408
BstV1I GCAGC 2 cut(s) 44, 337
BstV2I GAAGAC 2 cut(s) 665, 835
BstX2I RGATCY 2 cut(s) 271, 316
BstYI RGATCY 2 cut(s) 271, 316
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 2 cut(s) 368, 719
BtgZI GCGATG 1 cut(s) 1029
BtsCI GGATG 5 cut(s) 178, 238, 548, 714, 1087
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 507, 840
BtuMI TCGCGA 1 cut(s) 74
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 3 cut(s) 483, 945, 968
CfoI GCGC 2 cut(s) 208, 798
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 48
Csp6I GTAC 1 cut(s) 1105
CviAII CATG 5 cut(s) 263, 364, 696, 715, 901
CviQI GTAC 1 cut(s) 1105
DdeI CTNAG 5 cut(s) 36, 87, 228, 350, 924
DpnI GATC 7 cut(s) 126, 273, 318, 357, 846, 851, 1094
DpnII GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
DraI TTTAAA 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 72, 735
EarI CTCTTC 2 cut(s) 72, 735
EciI GGCGGA 2 cut(s) 129, 1094
Eco130I CCWWGG 1 cut(s) 982
Eco31I GGTCTC 1 cut(s) 5
Eco32I GATATC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 228
EcoRII CCWGG 3 cut(s) 48, 538, 548
EcoRV GATATC 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 982
ErhI CCWWGG 1 cut(s) 982
FaeI CATG 5 cut(s) 266, 367, 699, 718, 904
FalI AAGNNNNNCTT 4 cut(s) 557, 589, 732, 764
FaqI GGGAC 1 cut(s) 1082
FatI CATG 5 cut(s) 262, 363, 695, 714, 900
FauI CCCGC 1 cut(s) 697
Fnu4HI GCNGC 2 cut(s) 33, 326
FokI GGATG 5 cut(s) 185, 245, 555, 721, 1094
Fsp4HI GCNGC 2 cut(s) 33, 326
FspBI CTAG 2 cut(s) 509, 638
GlaI GCGC 2 cut(s) 207, 797
GluI GCNGC 2 cut(s) 33, 326
GsuI CTGGAG 1 cut(s) 906
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 2 cut(s) 368, 719
HapII CCGG 2 cut(s) 209, 468
HgaI GACGC 1 cut(s) 397
HhaI GCGC 2 cut(s) 208, 798
Hin1II CATG 5 cut(s) 266, 367, 699, 718, 904
Hin6I GCGC 2 cut(s) 206, 796
HinP1I GCGC 2 cut(s) 206, 796
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 471, 661, 745
HpaII CCGG 2 cut(s) 209, 468
HphI GGTGA 2 cut(s) 278, 311
Hpy166II GTNNAC 2 cut(s) 132, 907
Hpy188I TCNGA 5 cut(s) 10, 27, 198, 224, 849
Hpy8I GTNNAC 2 cut(s) 132, 907
HpyAV CCTTC 1 cut(s) 786
HpyCH4III ACNGT 2 cut(s) 152, 293
HpyCH4IV ACGT 1 cut(s) 869
HpyCH4V TGCA 8 cut(s) 32, 262, 457, 500, 577, 714, 858, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 1085
HpyF3I CTNAG 5 cut(s) 36, 87, 228, 350, 924
HpySE526I ACGT 1 cut(s) 869
Hsp92II CATG 5 cut(s) 266, 367, 699, 718, 904
HspAI GCGC 2 cut(s) 206, 796
Kpn2I TCCGGA 1 cut(s) 467
Kzo9I GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
LmnI GCTCC 2 cut(s) 346, 628
Lsp1109I GCAGC 2 cut(s) 44, 337
LweI GCATC 5 cut(s) 175, 321, 444, 533, 1052
MabI ACCWGGT 1 cut(s) 48
MaeI CTAG 2 cut(s) 509, 638
MaeII ACGT 1 cut(s) 869
MalI GATC 7 cut(s) 126, 273, 318, 357, 846, 851, 1094
MbiI CCGCTC 1 cut(s) 1117
MboI GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
MboII GAAGA 9 cut(s) 59, 88, 281, 388, 577, 670, 752, 840, 1087
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 2 cut(s) 271, 316
MluCI AATT 9 cut(s) 413, 420, 429, 447, 494, 771, 780, 821, 1120
MlyI GAGTC 2 cut(s) 655, 739
MmeI TCCRAC 1 cut(s) 367
MroI TCCGGA 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 4 cut(s) 342, 525, 632, 779
MslI CAYNNNNRTG 1 cut(s) 899
MspA1I CMGCKG 3 cut(s) 247, 328, 485
MspI CCGG 2 cut(s) 209, 468
MspR9I CCNGG 3 cut(s) 50, 540, 550
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 3 cut(s) 50, 540, 550
MvnI CGCG 2 cut(s) 74, 408
MwoI GCNNNNNNNGC 2 cut(s) 331, 1085
NdeII GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
NlaIII CATG 5 cut(s) 266, 367, 699, 718, 904
NlaIV GGNNCC 1 cut(s) 537
NruI TCGCGA 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 471
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 34, 327
PleI GAGTC 2 cut(s) 655, 739
PpsI GAGTC 2 cut(s) 655, 739
Psp1406I AACGTT 1 cut(s) 869
Psp6I CCWGG 3 cut(s) 48, 538, 548
PspGI CCWGG 3 cut(s) 48, 538, 548
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 2 cut(s) 271, 316
PsyI GACNNNGTC 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 328
RruI TCGCGA 1 cut(s) 74
RsaI GTAC 1 cut(s) 1106
RsaNI GTAC 1 cut(s) 1105
RseI CAYNNNNRTG 1 cut(s) 899
SaqAI TTAA 4 cut(s) 342, 525, 632, 779
SatI GCNGC 2 cut(s) 33, 326
Sau3AI GATC 7 cut(s) 124, 271, 316, 355, 844, 849, 1092
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 1106
SchI GAGTC 2 cut(s) 655, 739
ScrFI CCNGG 3 cut(s) 50, 540, 550
SexAI ACCWGGT 1 cut(s) 48
SfaNI GCATC 5 cut(s) 175, 321, 444, 533, 1052
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 899
SpeI ACTAGT 2 cut(s) 508, 637
Sse9I AATT 9 cut(s) 413, 420, 429, 447, 494, 771, 780, 821, 1120
SsiI CCGC 9 cut(s) 114, 188, 247, 406, 485, 704, 941, 1079, 1117
SspMI CTAG 2 cut(s) 509, 638
StyD4I CCNGG 3 cut(s) 48, 538, 548
StyI CCWWGG 1 cut(s) 982
TaaI ACNGT 2 cut(s) 152, 293
TaiI ACGT 1 cut(s) 872
TaqI TCGA 1 cut(s) 474
TasI AATT 9 cut(s) 413, 420, 429, 447, 494, 771, 780, 821, 1120
TatI WGTACW 1 cut(s) 1104
TfiI GAWTC 1 cut(s) 471
Tru1I TTAA 4 cut(s) 342, 525, 632, 779
Tru9I TTAA 4 cut(s) 342, 525, 632, 779
TscAI CASTG 2 cut(s) 507, 840
TseI GCWGC 2 cut(s) 32, 325
TspDTI ATGAA 3 cut(s) 249, 889, 1098
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 507, 840
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 413, 494
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 2 cut(s) 509, 638
ZrmI AGTACT 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.