AT5G42770

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002073
Physical Location & Seq
Forward (+)
17151988 .. 17154618
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42770.3

Sequence Viewer

Length: 621 bp
ATGGAATCGAATCATCCTCACTTCAAGCTAATTTTGGGATCTTCTTCGATTGCTCGACGTAAGATACTAACAGATATGGGATACCAATTCACTCTCATGAGTGCTGATATTGATGAGAAAAGCATCCGCAAGGAGAAACCTGAAGAGTTGGTTTTGGCTTTAGCTGAGGCAAAGGCTGAAGCAATCATGCAGCGGATCCCTGATGGTGAAAACATAGAGGAGGATAAGTCGACCTTACTTATTACTTGTGACCAAGTGGTTGTCTATGAAGATGCTGTTAGAGAGAAACCCTCGAGTGTCGAAGAAGCAAGGGAGTACATAAGAGGCTATTCCAAGGGGCATACAGCAACAGTGAGTTCTGTGGCTGTGACAAATCTCAAAACAGGAGTCAGAAAAGGAGGCGTCGATAGAGTGGAGATCTATTTCAATGAAATACCGGAAGAGACTATCGAGAAACTGATTGAGGAAGGCATGGTGCTTAAGGTGGCTGGTGCACTCCTAATCGAGCATCCGCTAATCTTGCCATGCGTTAAGGAAGTGGTTGGGACAACAGATAGTGTGATGGGTCTGCCCAAAGAATTGACTGAGAAACTGATAAAGGAAGTATTGGCAAGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

206

Amino Acids

22.83

Weight (kDa)

5.04

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 9 - 201 4.1e-42 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 230
AciI CCGC 3 cut(s) 127, 193, 512
AclWI GGATC 3 cut(s) 46, 190, 203
AcuI CTGAAG 2 cut(s) 162, 198
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 1 cut(s) 317
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 25, 427
AluBI AGCT 2 cut(s) 28, 164
AluI AGCT 2 cut(s) 28, 164
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 1 cut(s) 437
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 3 cut(s) 46, 190, 203
Ama87I CYCGRG 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 496
BamHI GGATCC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 496
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 197, 556
BciVI GTATCC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 437
BfrI CTTAAG 1 cut(s) 479
BfuI GTATCC 1 cut(s) 74
BglII AGATCT 1 cut(s) 417
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 3 cut(s) 132, 262, 517
BplI GAGNNNNNCTC 2 cut(s) 275, 307
Bpu10I CCTNAGC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 3 cut(s) 13, 123, 508
BseMII CTCAG 2 cut(s) 156, 576
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 3 cut(s) 38, 195, 417
BspACI CCGC 3 cut(s) 127, 193, 512
BspCNI CTCAG 2 cut(s) 157, 577
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 3 cut(s) 46, 190, 203
BspTI CTTAAG 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 3 cut(s) 38, 195, 417
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 138, 435
BstACI GRCGYC 1 cut(s) 402
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 165, 585
BstF5I GGATG 3 cut(s) 13, 123, 508
BstKTI GATC 3 cut(s) 41, 198, 420
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 38, 195, 417
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 496
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 3 cut(s) 38, 195, 417
BstYI RGATCY 3 cut(s) 38, 195, 417
BsuI GTATCC 1 cut(s) 74
BtsCI GGATG 3 cut(s) 13, 123, 508
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 96
CseI GACGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 97, 187, 472, 525
CviJI RGCY 7 cut(s) 28, 158, 164, 176, 327, 365, 488
CviKI_1 RGCY 7 cut(s) 28, 158, 164, 176, 327, 365, 488
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 165, 585
DpnI GATC 3 cut(s) 40, 197, 419
DpnII GATC 3 cut(s) 38, 195, 417
Eam1104I CTCTTC 2 cut(s) 138, 435
EarI CTCTTC 2 cut(s) 138, 435
Eco130I CCWWGG 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 162, 198
Eco88I CYCGRG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 100, 190, 475, 528
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 559
FatI CATG 4 cut(s) 96, 186, 471, 524
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 2 cut(s) 110, 495
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HapII CCGG 1 cut(s) 437
HgaI GACGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 4 cut(s) 100, 190, 475, 528
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 3 cut(s) 5, 10, 387
HpaII CCGG 1 cut(s) 437
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 231, 494
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 2 cut(s) 97, 451
Hpy8I GTNNAC 2 cut(s) 231, 494
Hpy99I CGWCG 2 cut(s) 60, 407
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 190, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 2 cut(s) 165, 585
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 4 cut(s) 100, 190, 475, 528
Kzo9I GATC 3 cut(s) 38, 195, 417
LpnPI CCDG 5 cut(s) 153, 213, 369, 450, 474
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 3 cut(s) 132, 262, 517
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 248, 367
MalI GATC 3 cut(s) 40, 197, 419
MboI GATC 3 cut(s) 38, 195, 417
MboII GAAGA 6 cut(s) 33, 36, 155, 281, 314, 452
MflI RGATCY 3 cut(s) 38, 195, 417
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 3 cut(s) 30, 86, 578
MlyI GAGTC 1 cut(s) 396
MnlI CCTC 8 cut(s) 27, 160, 211, 214, 301, 317, 392, 457
MseI TTAA 2 cut(s) 480, 531
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 3 cut(s) 38, 195, 417
NlaIII CATG 4 cut(s) 100, 190, 475, 528
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 248, 367
PaeR7I CTCGAG 1 cut(s) 292
PagI TCATGA 1 cut(s) 96
PfeI GAWTC 2 cut(s) 5, 10
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 197
PspXI VCTCGAGB 1 cut(s) 292
PsuI RGATCY 3 cut(s) 38, 195, 417
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 95
SalI GTCGAC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 480, 531
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 38, 195, 417
SchI GAGTC 1 cut(s) 396
SduI GDGCHC 1 cut(s) 496
SetI ASST 6 cut(s) 30, 61, 142, 166, 236, 486
SfaNI GCATC 3 cut(s) 132, 262, 517
Sfr274I CTCGAG 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 292, 479
SmoI CTYRAG 2 cut(s) 292, 479
Sse9I AATT 3 cut(s) 30, 86, 578
SsiI CCGC 3 cut(s) 127, 193, 512
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 61
TaqI TCGA 9 cut(s) 8, 47, 55, 230, 293, 300, 405, 450, 504
TasI AATT 3 cut(s) 30, 86, 578
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 5, 10
Tru1I TTAA 2 cut(s) 480, 531
Tru9I TTAA 2 cut(s) 480, 531
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 2 cut(s) 248, 367
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 248, 367
TspDTI ATGAA 2 cut(s) 282, 444
TspRI CASTG 1 cut(s) 357
Vha464I CTTAAG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.