Rw7G041340

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002073
Physical Location & Seq
Reverse (-)
64415862 .. 64422171
6310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041340.1

Sequence Viewer

Length: 651 bp
ATGGGGTATCAAGGGCATTCATTGGCAGGGTGTACTGTTTCAGGTGACAACTTGTCCATTAGAAAGTGTACTTATCGACCCAACATCTTTTATGTTGCAGATGCAATCATATCAAAAATACAAGCTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAATAATTGTAATTGCGGCAGATACAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGATCACATGTTACACTATTGTCCGCAAGAAAACCCTGCTTTTGCTAAACTCTCACCCAGATCATGAAATTGAGGCGGTCTATGTCAAAGACATGAATTTGATTGATATTCCTAAAGAGATCAAGGAAACCGCAAAGCACCTGAAGTCGGAGTTTGAGATGAAAGGCCTTGGGAGAACAGATTATTGTCTCGACCTGGAGCTCGAGCACAGTGCAGATGAAAATTTTGGTCCATCAACCAAATTACAATCCAGAAGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

216

Amino Acids

24.25

Weight (kDa)

5.78

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 39 - 134 8.3e-14 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 176, 412, 464, 519
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 2 cut(s) 484, 610
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 2 cut(s) 34, 70
AfiI CCNNNNNNNGG 1 cut(s) 535
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 3 cut(s) 125, 388, 589
AluI AGCT 3 cut(s) 125, 388, 589
Alw21I GWGCWC 2 cut(s) 591, 597
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 1 cut(s) 295
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 484, 610
AspS9I GGNCC 2 cut(s) 337, 617
AsuHPI GGTGA 2 cut(s) 56, 434
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 2 cut(s) 337, 617
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BanII GRGCYC 1 cut(s) 591
Bbv12I GWGCWC 2 cut(s) 591, 597
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 229, 628
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 1 cut(s) 584
BclI TGATCA 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 581
BglII AGATCT 1 cut(s) 348
BisI GCNGC 2 cut(s) 177, 276
BlsI GCNGC 2 cut(s) 178, 277
Bme1390I CCNGG 1 cut(s) 584
Bme18I GGWCC 2 cut(s) 337, 617
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 337, 617
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 91, 136
BpmI CTGGAG 2 cut(s) 285, 605
BsaJI CCNNGG 1 cut(s) 556
Bsc4I CCNNNNNNNGG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 2 cut(s) 151, 221
BseLI CCNNNNNNNGG 1 cut(s) 535
BseXI GCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 1 cut(s) 555
BsiHKAI GWGCWC 2 cut(s) 591, 597
BsiHKCI CYCGRG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 590
Bsp1286I GDGCHC 2 cut(s) 591, 597
Bsp143I GATC 5 cut(s) 287, 348, 390, 448, 507
BspACI CCGC 4 cut(s) 176, 412, 464, 519
BspANI GGCC 1 cut(s) 555
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 5 cut(s) 287, 348, 390, 448, 507
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 4 cut(s) 37, 187, 283, 599
BstF5I GGATG 2 cut(s) 151, 221
BstKTI GATC 5 cut(s) 290, 351, 393, 451, 510
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 5 cut(s) 287, 348, 390, 448, 507
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 2 cut(s) 275, 399
BstSCI CCNGG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 287, 348
BstYI RGATCY 2 cut(s) 287, 348
BsuRI GGCC 1 cut(s) 555
BtsCI GGATG 2 cut(s) 151, 221
BtsIMutI CAGTG 3 cut(s) 192, 288, 604
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 2 cut(s) 337, 617
Csp6I GTAC 2 cut(s) 33, 69
CviAII CATG 5 cut(s) 272, 359, 396, 452, 481
CviJI RGCY 5 cut(s) 125, 377, 388, 555, 589
CviKI_1 RGCY 5 cut(s) 125, 377, 388, 555, 589
CviQI GTAC 2 cut(s) 33, 69
DpnI GATC 5 cut(s) 289, 350, 392, 450, 509
DpnII GATC 5 cut(s) 287, 348, 390, 448, 507
DriI GACNNNNNGTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 591
Eco47I GGWCC 2 cut(s) 337, 617
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 5 cut(s) 275, 362, 399, 455, 484
FaqI GGGAC 1 cut(s) 350
FatI CATG 5 cut(s) 271, 358, 395, 451, 480
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 177, 276
FokI GGATG 2 cut(s) 158, 208
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 2 cut(s) 177, 276
GluI GCNGC 2 cut(s) 177, 276
GsuI CTGGAG 2 cut(s) 285, 605
HaeIII GGCC 1 cut(s) 555
Hin1II CATG 5 cut(s) 275, 362, 399, 455, 484
HinfI GANTC 1 cut(s) 318
HphI GGTGA 2 cut(s) 56, 434
Hpy166II GTNNAC 2 cut(s) 33, 69
Hpy188I TCNGA 1 cut(s) 538
Hpy188III TCNNGA 4 cut(s) 264, 452, 578, 639
Hpy8I GTNNAC 2 cut(s) 33, 69
HpyAV CCTTC 2 cut(s) 136, 194
HpyCH4III ACNGT 4 cut(s) 37, 187, 283, 599
HpyCH4V TGCA 4 cut(s) 98, 104, 275, 602
Hsp92II CATG 5 cut(s) 275, 362, 399, 455, 484
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 5 cut(s) 287, 348, 390, 448, 507
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 91, 136
MaeIII GTNAC 3 cut(s) 44, 298, 398
MalI GATC 5 cut(s) 289, 350, 392, 450, 509
MboI GATC 5 cut(s) 287, 348, 390, 448, 507
MboII GAAGA 1 cut(s) 245
MflI RGATCY 2 cut(s) 287, 348
MhlI GDGCHC 2 cut(s) 591, 597
MluCI AATT 7 cut(s) 165, 171, 245, 456, 484, 610, 629
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 2 cut(s) 260, 454
MseI TTAA 2 cut(s) 309, 649
MspR9I CCNGG 1 cut(s) 584
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 1 cut(s) 584
NdeII GATC 5 cut(s) 287, 348, 390, 448, 507
NlaIII CATG 5 cut(s) 275, 362, 399, 455, 484
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 2 cut(s) 275, 399
PaeR7I CTCGAG 1 cut(s) 590
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 555
PciI ACATGT 1 cut(s) 395
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 178, 277
PscI ACATGT 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 337, 617
PspXI VCTCGAGB 1 cut(s) 590
PsuI RGATCY 2 cut(s) 287, 348
RsaI GTAC 2 cut(s) 34, 70
RsaNI GTAC 2 cut(s) 33, 69
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 2 cut(s) 309, 649
SatI GCNGC 2 cut(s) 177, 276
Sau3AI GATC 5 cut(s) 287, 348, 390, 448, 507
Sau96I GGNCC 2 cut(s) 337, 617
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 2 cut(s) 591, 597
SetI ASST 9 cut(s) 46, 127, 157, 205, 309, 390, 531, 585, 591
SfaNI GCATC 2 cut(s) 91, 136
Sfr274I CTCGAG 1 cut(s) 590
SinI GGWCC 2 cut(s) 337, 617
SlaI CTCGAG 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 7 cut(s) 165, 171, 245, 456, 484, 610, 629
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 4 cut(s) 176, 412, 464, 519
SstI GAGCTC 1 cut(s) 591
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 4 cut(s) 37, 187, 283, 599
TaqI TCGA 3 cut(s) 76, 579, 591
TaqII GACCGA 1 cut(s) 354
TasI AATT 7 cut(s) 165, 171, 245, 456, 484, 610, 629
TatI WGTACW 2 cut(s) 32, 68
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 309, 649
Tru9I TTAA 2 cut(s) 309, 649
TscAI CASTG 3 cut(s) 192, 288, 604
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 8 cut(s) 9, 213, 375, 387, 468, 497, 563, 621
TspRI CASTG 3 cut(s) 192, 288, 604
VpaK11BI GGWCC 2 cut(s) 337, 617
XapI RAATTY 2 cut(s) 484, 610
XceI RCATGY 2 cut(s) 275, 399
XhoI CTCGAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.