Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002073

Physical Location & Seq

Genomic Coordinates Reverse (-)

34219739 .. 34223190

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G378700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGCCAATTCTTCTTCGTCTTTCAAGATAATTTTAGGCTCAGCTTCGGTAGCACGTCGGAAAATATTGGCTGAAATGGGATACGAATTCATAGTCATGACTGCAGACATTGACGAGAAATGCATCAGAAAGGAAAAGCCAGAGGAGTTGGTTTTGGTTCTTGCCCAGGCAAAGGCTGATGCTATTATATCCAAACTACAAACTATCAATAATCAAGAGAAGGATGCTGAACCGACTATTGTGATTGCAGCAGACACACTGATGGAAACTTCTCAGGCAGAAGCTAATTCACAAGGGCTCCCAGTTGGTGACTACATAAAGGATGACGAACCAACGCTATTAATTACTTCTGATCAAGTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCATGTTACAAACCTTAAAACCGGATTCAGTAAAGGAGAATGGGATCGAGTGGAGATTTATTTCCACGAAATACCGGATGAAATCATTGAGAAGCTGATTGAGGAGGGGACGGTGCTCAAAGTTGCTGGGGGACTCATAATAGAACATCCTCTAATTCTTCCCTTTGTTAAAGAAGTGGTAGGGACAACTGATAGCGTGATGGGACTTCCCAAAGATCTCACTAGGAGGCTGCTGAAAGAGGCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf

Protein Analysis

239

Amino Acids

26.18

Weight (kDa)

4.85

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42770 AT5G42770 AT5G42770
fragaria_vesca	FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740
malus_domestica	MD08G1031100.v1.1 MD15G1026600.v1.1
prunus_persica	Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1
pyrus_communis	pycom08g02440 pycom15g02260
rosa_chinensis	RchiOBHm_Chr6g0301121
rosa_laevigata	RLG00000009605 RLG00000011276
rosa_multiflora	Rmu_sc0003168.1_g000020 Rmu_ssc0000297.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445510 Rroxscaffold_7G00167140
rosa_rugosa	Rorug06G0301500 Rorug06G0301500 Rorug06G0301600 Rorug06G0301700 Rorug06G0301800
rosa_samantha	Rh2AG228100 Rh2DG236100 Rh2DG262100 Rh6AG415000 Rh6BG421900 Rh6CG191400 Rh6CG429500 Rh6DG414800 Rh7AG047700
rosa_wichuraiana	Rw7G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	469, 519
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	28, 427
AjiI	CACGTC	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	47, 287, 562
AluI	AGCT	3 cut(s)	47, 287, 562
Alw21I	GWGCWC	1 cut(s)	585
AlwI	GGATC	2 cut(s)	469, 519
AoxI	GGCC	1 cut(s)	708
ApeKI	GCWGC	3 cut(s)	251, 449, 697
ApoI	RAATTY	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AseI	ATTAAT	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	263, 461, 684
BccI	CCATC	3 cut(s)	259, 403, 661
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	2 cut(s)	355, 381
BfaI	CTAG	2 cut(s)	690, 715
BfmI	CTRYAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	77
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	3 cut(s)	252, 450, 698
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	3 cut(s)	253, 451, 699
Bme1390I	CCNGG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	3 cut(s)	135, 172, 217
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	2 cut(s)	488, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	5 cut(s)	232, 331, 395, 550, 613
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	57, 290
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	161, 584
BseXI	GCAGC	3 cut(s)	263, 461, 684
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	489, 542
BslFI	GGGAC	4 cut(s)	589, 612, 664, 684
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmFI	GGGAC	4 cut(s)	589, 612, 664, 684
BsnI	GGCC	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	303, 585
Bsp143I	GATC	5 cut(s)	355, 381, 461, 511, 682
Bsp1720I	GCTNAGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	2 cut(s)	56, 289
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	302
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	2 cut(s)	469, 519
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	355, 381, 461, 511, 682
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	457, 580
BstDEI	CTNAG	2 cut(s)	43, 276
BstF5I	GGATG	5 cut(s)	232, 331, 395, 550, 613
BstKTI	GATC	5 cut(s)	358, 384, 464, 514, 685
BstMBI	GATC	5 cut(s)	355, 381, 461, 511, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	2 cut(s)	449, 473
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	263, 461, 684
BstX2I	RGATCY	2 cut(s)	461, 682
BstYI	RGATCY	2 cut(s)	461, 682
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	710
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	5 cut(s)	232, 331, 395, 550, 613
BtsIMutI	CAGTG	2 cut(s)	260, 462
CciI	TCATGA	1 cut(s)	99
CviAII	CATG	3 cut(s)	100, 446, 470
DdeI	CTNAG	2 cut(s)	43, 276
DpnI	GATC	5 cut(s)	357, 383, 463, 513, 684
DpnII	GATC	5 cut(s)	355, 381, 461, 511, 682
Eco24I	GRGCYC	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	3 cut(s)	103, 449, 473
FaiI	YATR	8 cut(s)	95, 101, 191, 320, 372, 447, 471, 605
FaqI	GGGAC	4 cut(s)	589, 612, 664, 684
FatI	CATG	3 cut(s)	99, 445, 469
FbaI	TGATCA	2 cut(s)	355, 381
Fnu4HI	GCNGC	3 cut(s)	252, 450, 698
FokI	GGATG	5 cut(s)	239, 338, 382, 557, 600
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	252, 450, 698
FspBI	CTAG	2 cut(s)	690, 715
GluI	GCNGC	3 cut(s)	252, 450, 698
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	710
HapII	CCGG	2 cut(s)	489, 542
Hin1II	CATG	3 cut(s)	103, 449, 473
HinfI	GANTC	2 cut(s)	492, 600
HpaII	CCGG	2 cut(s)	489, 542
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	63, 131, 355
Hpy188III	TCNNGA	4 cut(s)	28, 100, 218, 438
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	217, 368
HpyCH4III	ACNGT	2 cut(s)	457, 580
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	107, 126, 251, 449, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	43, 276
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	103, 449, 473
Ksp22I	TGATCA	2 cut(s)	355, 381
Kzo9I	GATC	5 cut(s)	355, 381, 461, 511, 682
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	3 cut(s)	263, 461, 684
LweI	GCATC	3 cut(s)	135, 172, 217
MaeI	CTAG	2 cut(s)	690, 715
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	311, 472
MalI	GATC	5 cut(s)	357, 383, 463, 513, 684
MboI	GATC	5 cut(s)	355, 381, 461, 511, 682
MboII	GAAGA	4 cut(s)	6, 9, 419, 617
MflI	RGATCY	2 cut(s)	461, 682
MhlI	GDGCHC	2 cut(s)	303, 585
MluCI	AATT	7 cut(s)	10, 33, 89, 289, 345, 419, 621
MlyI	GAGTC	1 cut(s)	594
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	7 cut(s)	139, 434, 562, 565, 627, 687, 700
Mph1103I	ATGCAT	1 cut(s)	128
MseI	TTAA	3 cut(s)	344, 483, 636
MslI	CAYNNNNRTG	2 cut(s)	98, 263
MspI	CCGG	2 cut(s)	489, 542
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	5 cut(s)	355, 381, 461, 511, 682
NlaIII	CATG	3 cut(s)	103, 449, 473
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	2 cut(s)	449, 473
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	3 cut(s)	253, 451, 699
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PshBI	ATTAAT	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	461, 682
RseI	CAYNNNNRTG	2 cut(s)	98, 263
SaqAI	TTAA	3 cut(s)	344, 483, 636
SatI	GCNGC	3 cut(s)	252, 450, 698
Sau3AI	GATC	5 cut(s)	355, 381, 461, 511, 682
SchI	GAGTC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	303, 585
SetI	ASST	6 cut(s)	49, 61, 289, 379, 483, 564
SfaNI	GCATC	3 cut(s)	135, 172, 217
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	2 cut(s)	98, 263
Sse9I	AATT	7 cut(s)	10, 33, 89, 289, 345, 419, 621
SspI	AATATT	1 cut(s)	69
SspMI	CTAG	2 cut(s)	690, 715
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	457, 580
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	514
TasI	AATT	7 cut(s)	10, 33, 89, 289, 345, 419, 621
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	344, 483, 636
Tru9I	TTAA	3 cut(s)	344, 483, 636
TscAI	CASTG	2 cut(s)	267, 462
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	251, 449, 697
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	82, 387, 561
TspRI	CASTG	2 cut(s)	267, 462
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	2 cut(s)	449, 473
XspI	CTAG	2 cut(s)	690, 715
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.