Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002073

Physical Location & Seq

Genomic Coordinates Forward (+)

61006885 .. 61010122

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG415000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAACCAATTCTTCTCCTTCGTTCAAGATAATCTTGGGCTCATCGTCGAATGCTCGCCGGAAAATTTTGGCTGAAATGGGATATGAATTTACACTCATGACTGCAGACATTGACGAAAAAAGCATCCGAAAGGAGAAACCGGAGGAGTTGGTTATGGTTCTTGCTCAGGCAAAGGCTGATGCAATCATATCAAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAACAATTGTAATTGCGGCAGATACAGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAAAGGATGCTGAACCAACGCTATTAATTACCTCTGATCAAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGACAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACGAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGATTGAGGAAGGGACGGTGCTCAAAGTTGCCGGGGGACTGATAATAGAGCATCCTCTGATTCTTCCCTTTGTCAAGGAAGTGGTAGGGACTACTGACAGTGTGATGGGACTTCCAAAAGATATAACGGAGAGACTTCTTAAAGAAGCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf

Protein Analysis

234

Amino Acids

25.75

Weight (kDa)

4.93

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Maf	PF02545	10 - 92	2.4e-16	Maf-like protein
Maf	PF02545	106 - 232	3.9e-25	Maf-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42770 AT5G42770 AT5G42770
fragaria_vesca	FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740
malus_domestica	MD08G1031100.v1.1 MD15G1026600.v1.1
prunus_persica	Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1
pyrus_communis	pycom08g02440 pycom15g02260
rosa_chinensis	RchiOBHm_Chr6g0301121
rosa_laevigata	RLG00000009605 RLG00000011276
rosa_multiflora	Rmu_sc0003168.1_g000020 Rmu_ssc0000297.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445510 Rroxscaffold_7G00167140
rosa_rugosa	Rorug06G0301500 Rorug06G0301500 Rorug06G0301600 Rorug06G0301700 Rorug06G0301800
rosa_samantha	Rh2AG228100 Rh2DG236100 Rh2DG262100 Rh6AG415000 Rh6BG421900 Rh6CG191400 Rh6CG429500 Rh6DG414800 Rh7AG047700
rosa_wichuraiana	Rw7G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	2 cut(s)	66, 89
AgsI	TTSAA	2 cut(s)	28, 415
AluBI	AGCT	3 cut(s)	289, 550, 698
AluI	AGCT	3 cut(s)	289, 550, 698
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	457
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	66, 89
AseI	ATTAAT	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	3 cut(s)	284, 391, 649
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	676
BfmI	CTRYAG	2 cut(s)	105, 701
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	2 cut(s)	258, 438
BlsI	GCNGC	2 cut(s)	259, 439
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	583
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	5 cut(s)	135, 172, 217, 304, 610
BmuI	ACTGGG	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	168, 285
BpuMI	CCSGG	1 cut(s)	583
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	6 cut(s)	126, 232, 276, 319, 383, 601
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	4 cut(s)	61, 143, 280, 582
BslFI	GGGAC	5 cut(s)	512, 577, 600, 652, 672
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	5 cut(s)	512, 577, 600, 652, 672
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	44, 573
Bsp143I	GATC	3 cut(s)	343, 449, 510
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	500
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	343, 449, 510
Bst4CI	ACNGT	3 cut(s)	445, 568, 650
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	168, 285
BstF5I	GGATG	6 cut(s)	126, 232, 276, 319, 383, 601
BstKTI	GATC	3 cut(s)	346, 452, 513
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	3 cut(s)	343, 449, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	581
BstSFI	CTRYAG	2 cut(s)	105, 701
BstSNI	TACGTA	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	449
BstX2I	RGATCY	2 cut(s)	449, 510
BstYI	RGATCY	2 cut(s)	449, 510
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	6 cut(s)	126, 232, 276, 319, 383, 601
BtsIMutI	CAGTG	2 cut(s)	450, 655
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	499
CviAII	CATG	3 cut(s)	100, 434, 521
CviJI	RGCY	9 cut(s)	42, 74, 179, 275, 283, 289, 539, 550, 698
CviKI_1	RGCY	9 cut(s)	42, 74, 179, 275, 283, 289, 539, 550, 698
DdeI	CTNAG	2 cut(s)	168, 285
DpnI	GATC	3 cut(s)	345, 451, 512
DpnII	GATC	3 cut(s)	343, 449, 510
Eco105I	TACGTA	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	103, 437, 524
FaiI	YATR	9 cut(s)	87, 101, 158, 191, 213, 360, 435, 522, 674
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	5 cut(s)	512, 577, 600, 652, 672
FatI	CATG	3 cut(s)	99, 433, 520
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	258, 438
FokI	GGATG	6 cut(s)	113, 239, 263, 326, 370, 588
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	258, 438
GluI	GCNGC	2 cut(s)	258, 438
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	4 cut(s)	61, 143, 280, 582
Hin1II	CATG	3 cut(s)	103, 437, 524
HinfI	GANTC	2 cut(s)	480, 610
HpaII	CCGG	4 cut(s)	61, 143, 280, 582
Hpy188I	TCNGA	3 cut(s)	131, 343, 609
Hpy188III	TCNNGA	3 cut(s)	28, 100, 426
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	4 cut(s)	30, 217, 356, 554
HpyCH4III	ACNGT	3 cut(s)	445, 568, 650
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	107, 185, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	168, 285
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	103, 437, 524
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	343, 449, 510
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	5 cut(s)	135, 172, 217, 304, 610
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	3 cut(s)	345, 451, 512
MboI	GATC	3 cut(s)	343, 449, 510
MboII	GAAGA	3 cut(s)	6, 407, 605
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	2 cut(s)	449, 510
MhlI	GDGCHC	2 cut(s)	44, 573
MluCI	AATT	7 cut(s)	10, 66, 89, 246, 252, 333, 407
MnlI	CCTC	5 cut(s)	139, 349, 422, 550, 615
MseI	TTAA	3 cut(s)	332, 471, 690
MspI	CCGG	4 cut(s)	61, 143, 280, 582
MspR9I	CCNGG	1 cut(s)	583
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	3 cut(s)	343, 449, 510
NlaIII	CATG	3 cut(s)	103, 437, 524
NlaIV	GGNNCC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	437
PagI	TCATGA	1 cut(s)	99
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	480, 610
PkrI	GCNGC	2 cut(s)	259, 439
Ppu21I	YACGTR	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	449, 510
SaqAI	TTAA	3 cut(s)	332, 471, 690
SatI	GCNGC	2 cut(s)	258, 438
Sau3AI	GATC	3 cut(s)	343, 449, 510
Sau96I	GGNCC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	2 cut(s)	44, 573
SetI	ASST	8 cut(s)	238, 291, 309, 341, 367, 471, 552, 700
SfaNI	GCATC	5 cut(s)	135, 172, 217, 304, 610
SfcI	CTRYAG	2 cut(s)	105, 701
SinI	GGWCC	1 cut(s)	499
SnaBI	TACGTA	1 cut(s)	307
Sse9I	AATT	7 cut(s)	10, 66, 89, 246, 252, 333, 407
SsiI	CCGC	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	445, 568, 650
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	50
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	7 cut(s)	10, 66, 89, 246, 252, 333, 407
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	480, 610
Tru1I	TTAA	3 cut(s)	332, 471, 690
Tru9I	TTAA	3 cut(s)	332, 471, 690
TscAI	CASTG	2 cut(s)	450, 655
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	102, 375, 537, 549
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	450, 655
VpaK11BI	GGWCC	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	2 cut(s)	66, 89
XceI	RCATGY	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.