Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002073

Physical Location & Seq

Genomic Coordinates Forward (+)

59926090 .. 59929157

Gene Structure 3068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAACCAATTCTTCTCCTTCGTTCAAGATAATCTTGGGCTCATCTTCGATAGCTCGCCGGAAAATTTTGGCTGAAATGGGATATGAATTCACACTCATGACTGCAGACATTGACGAAAAAAGCATCCGAAAGGAGAAACCGGAGGAGTTGGTTATGGTTCTTGCTCAGGCAAAGGCTGATGCAATCATATCGAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCAACAATTGTAATTGCGGCAGATACAGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAAAGGATGCTGAACCAACGCTATTAATTACCTCTGATCAAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGATTGAGGAAGGGACGGTGCTCAAAGTTGCCGGGGGACTGATAATAGAGCATCCTCTGATTCTTCCCTTTGTCAAAGAAGTGGTAGGGACTACTGATAGTGTGATGGGACTTCCAAAAGATATAACGGAGAGACTTCTTAAAGAAGCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf

Protein Analysis

232

Amino Acids

25.52

Weight (kDa)

4.98

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Maf	PF02545	10 - 90	4.7e-16	Maf-like protein
Maf	PF02545	104 - 230	3.8e-25	Maf-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42770 AT5G42770 AT5G42770
fragaria_vesca	FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740
malus_domestica	MD08G1031100.v1.1 MD15G1026600.v1.1
prunus_persica	Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1
pyrus_communis	pycom08g02440 pycom15g02260
rosa_chinensis	RchiOBHm_Chr6g0301121
rosa_laevigata	RLG00000009605 RLG00000011276
rosa_multiflora	Rmu_sc0003168.1_g000020 Rmu_ssc0000297.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445510 Rroxscaffold_7G00167140
rosa_rugosa	Rorug06G0301500 Rorug06G0301500 Rorug06G0301600 Rorug06G0301700 Rorug06G0301800
rosa_samantha	Rh2AG228100 Rh2DG236100 Rh2DG262100 Rh6AG415000 Rh6BG421900 Rh6CG191400 Rh6CG429500 Rh6DG414800 Rh7AG047700
rosa_wichuraiana	Rw7G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	66, 89
AgsI	TTSAA	2 cut(s)	28, 409
AluBI	AGCT	4 cut(s)	56, 283, 544, 692
AluI	AGCT	4 cut(s)	56, 283, 544, 692
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	670
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	2 cut(s)	66, 89
AseI	ATTAAT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	1 cut(s)	577
AvaII	GGWCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	278, 385, 643
BceAI	ACGGC	1 cut(s)	413
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	670
BfmI	CTRYAG	2 cut(s)	105, 695
BglII	AGATCT	1 cut(s)	504
BisI	GCNGC	2 cut(s)	252, 432
BlsI	GCNGC	2 cut(s)	253, 433
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	577
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	5 cut(s)	135, 172, 217, 298, 604
BmuI	ACTGGG	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	2 cut(s)	168, 279
BpuMI	CCSGG	1 cut(s)	577
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	6 cut(s)	126, 232, 270, 313, 377, 595
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	4 cut(s)	61, 143, 274, 576
BslFI	GGGAC	5 cut(s)	506, 571, 594, 646, 666
BsmAI	GTCTC	1 cut(s)	670
BsmFI	GGGAC	5 cut(s)	506, 571, 594, 646, 666
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	44, 567
Bsp143I	GATC	3 cut(s)	337, 443, 504
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	494
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	3 cut(s)	337, 443, 504
Bst4CI	ACNGT	2 cut(s)	439, 562
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	168, 279
BstF5I	GGATG	6 cut(s)	126, 232, 270, 313, 377, 595
BstKTI	GATC	3 cut(s)	340, 446, 507
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	3 cut(s)	337, 443, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	575
BstSFI	CTRYAG	2 cut(s)	105, 695
BstSNI	TACGTA	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	443, 504
BstYI	RGATCY	2 cut(s)	443, 504
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	6 cut(s)	126, 232, 270, 313, 377, 595
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	493
CviAII	CATG	3 cut(s)	100, 428, 515
DdeI	CTNAG	2 cut(s)	168, 279
DpnI	GATC	3 cut(s)	339, 445, 506
DpnII	GATC	3 cut(s)	337, 443, 504
Eco105I	TACGTA	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	103, 431, 518
FaiI	YATR	9 cut(s)	87, 101, 158, 191, 213, 354, 429, 516, 668
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	5 cut(s)	506, 571, 594, 646, 666
FatI	CATG	3 cut(s)	99, 427, 514
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	252, 432
FokI	GGATG	6 cut(s)	113, 239, 257, 320, 364, 582
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	252, 432
GluI	GCNGC	2 cut(s)	252, 432
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	4 cut(s)	61, 143, 274, 576
Hin1II	CATG	3 cut(s)	103, 431, 518
HinfI	GANTC	2 cut(s)	474, 604
HpaII	CCGG	4 cut(s)	61, 143, 274, 576
Hpy188I	TCNGA	3 cut(s)	131, 337, 603
Hpy188III	TCNNGA	3 cut(s)	28, 100, 420
HpyAV	CCTTC	4 cut(s)	30, 217, 350, 548
HpyCH4III	ACNGT	2 cut(s)	439, 562
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	107, 185, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	168, 279
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	103, 431, 518
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	337, 443, 504
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	5 cut(s)	135, 172, 217, 298, 604
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	339, 445, 506
MboI	GATC	3 cut(s)	337, 443, 504
MboII	GAAGA	4 cut(s)	6, 39, 401, 599
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	443, 504
MhlI	GDGCHC	2 cut(s)	44, 567
MluCI	AATT	7 cut(s)	10, 66, 89, 240, 246, 327, 401
MnlI	CCTC	5 cut(s)	139, 343, 416, 544, 609
MseI	TTAA	3 cut(s)	326, 465, 684
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	4 cut(s)	61, 143, 274, 576
MspR9I	CCNGG	1 cut(s)	577
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	577
NdeII	GATC	3 cut(s)	337, 443, 504
NlaIII	CATG	3 cut(s)	103, 431, 518
NlaIV	GGNNCC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	431
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	474, 604
PkrI	GCNGC	2 cut(s)	253, 433
Ppu21I	YACGTR	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	443, 504
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	326, 465, 684
SatI	GCNGC	2 cut(s)	252, 432
Sau3AI	GATC	3 cut(s)	337, 443, 504
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	2 cut(s)	44, 567
SetI	ASST	8 cut(s)	58, 285, 303, 335, 361, 465, 546, 694
SfaNI	GCATC	5 cut(s)	135, 172, 217, 298, 604
SfcI	CTRYAG	2 cut(s)	105, 695
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	98
SnaBI	TACGTA	1 cut(s)	301
Sse9I	AATT	7 cut(s)	10, 66, 89, 240, 246, 327, 401
SsiI	CCGC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	575
TaaI	ACNGT	2 cut(s)	439, 562
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	50, 194
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	7 cut(s)	10, 66, 89, 240, 246, 327, 401
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	474, 604
Tru1I	TTAA	3 cut(s)	326, 465, 684
Tru9I	TTAA	3 cut(s)	326, 465, 684
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	4 cut(s)	102, 369, 531, 543
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	2 cut(s)	66, 89
XceI	RCATGY	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.