Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002073

Physical Location & Seq

Genomic Coordinates Reverse (-)

1799325 .. 1802656

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAAGCCGATTCATCTTCCTTCAAGATAATCTTGGGATCGGCTTCGATAGCACGCCGGAAAATATTGGCTGAAATGGGATATGAATTCATAGTCGTGACTGCAGACATTGACGAAAAATCCATCCGAACGGAAAAACCAGAGGAGTTGGTTTTGGTTCTTGCCAAGGCAAAGGCCGATGCTATTATATCAAAGTTGCAAAGCATCAATAATCAAGAGAAGGATGCTGACCCGACAATTGTGATTGCAGCAGACACAGCAGAAGCCATTTCACAAAAGCTCCCAGTTGGGGACTACATAAAAGATGCTGAACCAACGCTATTAGTTACTTCTGATCAAGTGGTGGTCTATGAAGGTGTGATCCGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAGGATTATTCTGGAGGGCATGCAGCAACTGTAGGATCTGTGCATGTTACAAACCTTAAAACGGGATTCAGTAAAGGAGAATGGGATCGAGTGGAGATTTATTTCCATAAAATACCAGATGAAGTCATTGAGAAGCTGATTGAGGAGGGGATAGTGCTCAAAGTTGCTGGGGGACTCATAATCGAACATCCACTGATTCTTCCCTATGTCAAAGAAGTGGTAGGGACAACCGATAGCGTGATGGGACTTCCCAAAGATCTCACTAGGAGACTCCTGAAAGAGGCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf

Protein Analysis

232

Amino Acids

25.34

Weight (kDa)

5.1

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42770 AT5G42770 AT5G42770
fragaria_vesca	FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740
malus_domestica	MD08G1031100.v1.1 MD15G1026600.v1.1
prunus_persica	Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1
pyrus_communis	pycom08g02440 pycom15g02260
rosa_chinensis	RchiOBHm_Chr6g0301121
rosa_laevigata	RLG00000009605 RLG00000011276
rosa_multiflora	Rmu_sc0003168.1_g000020 Rmu_ssc0000297.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445510 Rroxscaffold_7G00167140
rosa_rugosa	Rorug06G0301500 Rorug06G0301500 Rorug06G0301600 Rorug06G0301700 Rorug06G0301800
rosa_samantha	Rh2AG228100 Rh2DG236100 Rh2DG262100 Rh6AG415000 Rh6BG421900 Rh6CG191400 Rh6CG429500 Rh6DG414800 Rh7AG047700
rosa_wichuraiana	Rw7G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	46, 355, 448, 498
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	289, 466, 685
AgsI	TTSAA	2 cut(s)	25, 406
AluBI	AGCT	2 cut(s)	280, 541
AluI	AGCT	2 cut(s)	280, 541
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	4 cut(s)	46, 355, 448, 498
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	174, 687
ApeKI	GCWGC	2 cut(s)	248, 428
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	260, 440
BccI	CCATC	3 cut(s)	131, 382, 640
BceAI	ACGGC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	2 cut(s)	669, 694
BfmI	CTRYAG	2 cut(s)	102, 435
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	249, 429
BlsI	GCNGC	2 cut(s)	250, 430
Bme1390I	CCNGG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	688
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	4 cut(s)	169, 213, 214, 295
BmuI	ACTGGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 466, 685
Bse1I	ACTGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	123, 229, 374, 592
BseLI	CCNNNNNNNGG	3 cut(s)	289, 466, 685
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	158, 563
BseXI	GCAGC	2 cut(s)	260, 440
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	2 cut(s)	176, 689
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	58, 364
BslFI	GGGAC	4 cut(s)	305, 591, 643, 663
BslI	CCNNNNNNNGG	3 cut(s)	289, 466, 685
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	4 cut(s)	305, 591, 643, 663
BsnI	GGCC	2 cut(s)	176, 689
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
BspANI	GGCC	2 cut(s)	176, 689
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	4 cut(s)	46, 355, 448, 498
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	55, 426
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	4 cut(s)	123, 229, 374, 592
BstKTI	GATC	6 cut(s)	41, 337, 363, 443, 493, 664
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 257
BstNSI	RCATGY	2 cut(s)	428, 452
BstSCI	CCNGG	1 cut(s)	363
BstSFI	CTRYAG	2 cut(s)	102, 435
BstV1I	GCAGC	2 cut(s)	260, 440
BstX2I	RGATCY	2 cut(s)	440, 661
BstYI	RGATCY	2 cut(s)	440, 661
BsuRI	GGCC	2 cut(s)	176, 689
BtsCI	GGATG	4 cut(s)	123, 229, 374, 592
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	55, 426
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	688
CviAII	CATG	2 cut(s)	425, 449
CviJI	RGCY	8 cut(s)	8, 44, 71, 176, 266, 280, 541, 689
CviKI_1	RGCY	8 cut(s)	8, 44, 71, 176, 266, 280, 541, 689
DpnI	GATC	6 cut(s)	40, 336, 362, 442, 492, 663
DpnII	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
Eco130I	CCWWGG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	428, 452
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	4 cut(s)	305, 591, 643, 663
FatI	CATG	2 cut(s)	424, 448
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	249, 429
FokI	GGATG	4 cut(s)	110, 236, 361, 579
Fsp4HI	GCNGC	2 cut(s)	249, 429
FspBI	CTAG	2 cut(s)	669, 694
GluI	GCNGC	2 cut(s)	249, 429
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	2 cut(s)	176, 689
HapII	CCGG	2 cut(s)	58, 364
Hin1II	CATG	2 cut(s)	428, 452
HinfI	GANTC	5 cut(s)	11, 471, 579, 601, 675
HpaII	CCGG	2 cut(s)	58, 364
Hpy188I	TCNGA	2 cut(s)	128, 334
Hpy188III	TCNNGA	5 cut(s)	25, 97, 215, 417, 679
HpyAV	CCTTC	4 cut(s)	31, 214, 347, 400
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	104, 199, 248, 428, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 257
Hsp92II	CATG	2 cut(s)	428, 452
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	9 cut(s)	71, 153, 297, 377, 391, 402, 534, 558, 692
Lsp1109I	GCAGC	2 cut(s)	260, 440
LweI	GCATC	4 cut(s)	169, 213, 214, 295
MaeI	CTAG	2 cut(s)	669, 694
MaeIII	GTNAC	3 cut(s)	97, 325, 451
MalI	GATC	6 cut(s)	40, 336, 362, 442, 492, 663
MboI	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
MboII	GAAGA	3 cut(s)	9, 398, 596
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	440, 661
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	3 cut(s)	86, 237, 398
MlyI	GAGTC	2 cut(s)	573, 669
MnlI	CCTC	5 cut(s)	136, 413, 541, 544, 679
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	2 cut(s)	58, 364
MspR9I	CCNGG	1 cut(s)	365
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	50, 257
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
NlaIII	CATG	2 cut(s)	428, 452
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	2 cut(s)	428, 452
PaeI	GCATGC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	11, 471, 601
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	250, 430
PleI	GAGTC	2 cut(s)	573, 669
PpsI	GAGTC	2 cut(s)	573, 669
PspFI	CCCAGC	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	688
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	440, 661
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	249, 429
Sau3AI	GATC	6 cut(s)	38, 334, 360, 440, 490, 661
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	2 cut(s)	573, 669
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	564
SetI	ASST	4 cut(s)	282, 358, 462, 543
SfaNI	GCATC	4 cut(s)	169, 213, 214, 295
SfcI	CTRYAG	2 cut(s)	102, 435
SmiMI	CAYNNNNRTG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	3 cut(s)	86, 237, 398
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	2 cut(s)	669, 694
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	3 cut(s)	47, 493, 588
TasI	AATT	3 cut(s)	86, 237, 398
TfiI	GAWTC	3 cut(s)	11, 471, 601
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	248, 428
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	4 cut(s)	79, 99, 366, 540
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	683
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	2 cut(s)	428, 452
XspI	CTAG	2 cut(s)	669, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.