Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000297.1

Orthogroup ID

OG0002073

Physical Location & Seq

Genomic Coordinates Forward (+)

27793 .. 30018

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000297.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggaaacttctcaggcagaagccatccggcctaagctcccagttgatgactacgtaaaggatgctgaaccaacgctattaattacctctgatcaagtggtagtctatgaaggtgctgtcagggaaaaaccatccagcaaggaagaagcacggcaatttttgaaagactattctggagaacatgcagcaacagtgggatctgtgcttgttacaaaccttaaaacaggattcagtaaaggagaatgggaccgagtggagtccgtcgactttcaatttcatcaaaaacacccctgcggagaacactatcctgcggtcaacgtcgacggagacgagggtctggaggtcgtccgctgcttcggcggcggaggcgaagaagtggcagaggtaggagtgggaggagtggtagaggctgttgaggttgaaggtggcttagaagttttcagggtcagaagaagagtagaaggcaggcttggcagtggggacggtggtggtggtgatgttgaagtttcgtctgcggactaccacttagaggttcacctcgactcccccggaattgacattgtcttggcctgcgactccgctgcgatggctttcatggcggaagaggaagaagatgaggagaggaggagagaggtgggtggagatgacaaagtgtttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf

Protein Analysis

220

Amino Acids

23.85

Weight (kDa)

4.45

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42770 AT5G42770 AT5G42770
fragaria_vesca	FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740 FvH4_2g39740
malus_domestica	MD08G1031100.v1.1 MD15G1026600.v1.1
prunus_persica	Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1 Prupe.1G378700_v2.0.a1
pyrus_communis	pycom08g02440 pycom15g02260
rosa_chinensis	RchiOBHm_Chr6g0301121
rosa_laevigata	RLG00000009605 RLG00000011276
rosa_multiflora	Rmu_sc0003168.1_g000020 Rmu_ssc0000297.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445510 Rroxscaffold_7G00167140
rosa_rugosa	Rorug06G0301500 Rorug06G0301500 Rorug06G0301600 Rorug06G0301700 Rorug06G0301800
rosa_samantha	Rh2AG228100 Rh2DG236100 Rh2DG262100 Rh6AG415000 Rh6BG421900 Rh6CG191400 Rh6CG429500 Rh6DG414800 Rh7AG047700
rosa_wichuraiana	Rw7G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	264, 321
AciI	CCGC	8 cut(s)	294, 311, 349, 360, 363, 515, 579, 599
AclWI	GGATC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	163, 272, 422, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	2 cut(s)	29, 567
ApeKI	GCWGC	3 cut(s)	185, 351, 581
AseI	ATTAAT	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	506, 527
AvaII	GGWCC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	197, 338, 568
BccI	CCATC	3 cut(s)	32, 139, 580
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	4 cut(s)	186, 352, 361, 582
BlsI	GCNGC	4 cut(s)	187, 353, 362, 583
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	35
BoxI	GACNNNNGTC	1 cut(s)	333
BpmI	CTGGAG	2 cut(s)	195, 359
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	3 cut(s)	24, 67, 131
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	4 cut(s)	411, 632, 637, 640
BseXI	GCAGC	3 cut(s)	197, 338, 568
BshFI	GGCC	2 cut(s)	31, 569
BsiSI	CCGG	2 cut(s)	28, 549
BslFI	GGGAC	2 cut(s)	260, 494
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	321
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	260, 494
BsnI	GGCC	2 cut(s)	31, 569
Bsp143I	GATC	2 cut(s)	91, 197
BspACI	CCGC	8 cut(s)	294, 311, 349, 360, 363, 515, 579, 599
BspANI	GGCC	2 cut(s)	31, 569
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	2 cut(s)	91, 197
Bst4CI	ACNGT	2 cut(s)	193, 485
Bst6I	CTCTTC	2 cut(s)	448, 597
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	467, 571
BstDEI	CTNAG	4 cut(s)	12, 33, 430, 526
BstF5I	GGATG	3 cut(s)	24, 67, 131
BstKTI	GATC	2 cut(s)	94, 200
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	2 cut(s)	91, 197
BstMWI	GCNNNNNNNGC	6 cut(s)	357, 360, 366, 471, 587, 596
BstNSI	RCATGY	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	547
BstSNI	TACGTA	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	197, 338, 568
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	31, 569
BtgZI	GCGATG	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	24, 67, 131
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	198, 481
Cac8I	GCNNGC	2 cut(s)	467, 571
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	2 cut(s)	182, 595
CviJI	RGCY	8 cut(s)	23, 31, 37, 410, 429, 469, 569, 590
CviKI_1	RGCY	8 cut(s)	23, 31, 37, 410, 429, 469, 569, 590
DdeI	CTNAG	4 cut(s)	12, 33, 430, 526
DpnI	GATC	2 cut(s)	93, 199
DpnII	GATC	2 cut(s)	91, 197
Eam1104I	CTCTTC	2 cut(s)	448, 597
EarI	CTCTTC	2 cut(s)	448, 597
EciI	GGCGGA	2 cut(s)	378, 614
Eco105I	TACGTA	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	185, 598
FaiI	YATR	3 cut(s)	108, 183, 596
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	260, 494
FatI	CATG	2 cut(s)	181, 594
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	2 cut(s)	264, 321
Fnu4HI	GCNGC	4 cut(s)	186, 352, 361, 582
FokI	GGATG	3 cut(s)	11, 74, 118
Fsp4HI	GCNGC	4 cut(s)	186, 352, 361, 582
GluI	GCNGC	4 cut(s)	186, 352, 361, 582
GsuI	CTGGAG	2 cut(s)	195, 359
HaeIII	GGCC	2 cut(s)	31, 569
HapII	CCGG	2 cut(s)	28, 549
Hin1II	CATG	2 cut(s)	185, 598
HincII	GTYRAC	3 cut(s)	265, 316, 322
HindII	GTYRAC	3 cut(s)	265, 316, 322
HinfI	GANTC	4 cut(s)	228, 257, 542, 575
HpaII	CCGG	2 cut(s)	28, 549
HphI	GGTGA	2 cut(s)	506, 527
Hpy166II	GTNNAC	4 cut(s)	265, 316, 322, 535
Hpy188I	TCNGA	2 cut(s)	91, 449
Hpy188III	TCNNGA	2 cut(s)	174, 338
Hpy8I	GTNNAC	4 cut(s)	265, 316, 322, 535
Hpy99I	CGWCG	3 cut(s)	266, 323, 326
HpyAV	CCTTC	3 cut(s)	104, 416, 455
HpyCH4III	ACNGT	2 cut(s)	193, 485
HpyCH4IV	ACGT	2 cut(s)	54, 318
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	6 cut(s)	357, 360, 366, 471, 587, 596
HpyF3I	CTNAG	4 cut(s)	12, 33, 430, 526
HpySE526I	ACGT	2 cut(s)	54, 318
Hsp92II	CATG	2 cut(s)	185, 598
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 197
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	3 cut(s)	197, 338, 568
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	54, 318
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	93, 199
MboI	GATC	2 cut(s)	91, 197
MboII	GAAGA	7 cut(s)	155, 383, 462, 465, 614, 620, 623
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	4 cut(s)	81, 155, 272, 552
MlyI	GAGTC	3 cut(s)	266, 536, 569
MseI	TTAA	3 cut(s)	80, 219, 661
MspA1I	CMGCKG	2 cut(s)	351, 581
MspI	CCGG	2 cut(s)	28, 549
MspR9I	CCNGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	6 cut(s)	357, 360, 366, 471, 587, 596
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	2 cut(s)	91, 197
NlaIII	CATG	2 cut(s)	185, 598
NlaIV	GGNNCC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	228
PflFI	GACNNNGTC	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	187, 353, 362, 583
PleI	GAGTC	3 cut(s)	265, 536, 569
PpsI	GAGTC	3 cut(s)	265, 536, 569
Ppu21I	YACGTR	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	560
SalI	GTCGAC	2 cut(s)	263, 320
SaqAI	TTAA	3 cut(s)	80, 219, 661
SatI	GCNGC	4 cut(s)	186, 352, 361, 582
Sau3AI	GATC	2 cut(s)	91, 197
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	3 cut(s)	266, 536, 569
ScrFI	CCNGG	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	52
SgrDI	CGTCGACG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	247
SnaBI	TACGTA	1 cut(s)	55
Sse9I	AATT	4 cut(s)	81, 155, 272, 552
SsiI	CCGC	8 cut(s)	294, 311, 349, 360, 363, 515, 579, 599
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	193, 485
TaiI	ACGT	2 cut(s)	57, 321
TaqI	TCGA	3 cut(s)	264, 321, 540
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	4 cut(s)	81, 155, 272, 552
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	3 cut(s)	80, 219, 661
Tru9I	TTAA	3 cut(s)	80, 219, 661
TscAI	CASTG	2 cut(s)	198, 481
TseI	GCWGC	3 cut(s)	185, 351, 581
TspDTI	ATGAA	3 cut(s)	123, 266, 583
TspGWI	ACGGA	2 cut(s)	250, 339
TspRI	CASTG	2 cut(s)	198, 481
Tth111I	GACNNNGTC	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	247
VspI	ATTAAT	1 cut(s)	80
XceI	RCATGY	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	264, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.