Rh2DG262100

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002073
Physical Location & Seq
Forward (+)
28241554 .. 28267031
25478 bp
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UTR
Exon/CDS
Intron
Rh2DG262100.1

Sequence Viewer

Length: 360 bp
ATGAAAAGTGATCAAACTAATGACAAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCGGGCTGATGCAATCATATCAAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAACAATTGTAATTGCGGCAGATACAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGCAAGTACTCTTTCAGATATAGTATTTGCTACGAGTCAGGGTGCTCGTGGACTCGGTTCTTGCAGCGATAGTGGGAACGGTTGGCTTTCCAATGGAGGCGGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

119

Amino Acids

12.79

Weight (kDa)

5.81

Isoelectric Point (pI)

23.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 39 - 87 3.4e-07 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 173, 351
AcuI CTGAAG 1 cut(s) 58
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw21I GWGCWC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 315, 354
AsuC2I CCSGG 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BauI CACGAG 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 254
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 2 cut(s) 84, 358
BglII AGATCT 1 cut(s) 57
BisI GCNGC 4 cut(s) 174, 316, 352, 355
BlsI GCNGC 4 cut(s) 175, 317, 353, 356
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 3 cut(s) 53, 88, 133
BpiI GAAGAC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 92
BseGI GGATG 3 cut(s) 44, 148, 218
BseXI GCAGC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 2 cut(s) 10, 57
BspACI CCGC 2 cut(s) 173, 351
BssMI GATC 2 cut(s) 10, 57
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 184, 332
BstF5I GGATG 3 cut(s) 44, 148, 218
BstKTI GATC 2 cut(s) 13, 60
BstMBI GATC 2 cut(s) 10, 57
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BtsCI GGATG 3 cut(s) 44, 148, 218
BtsIMutI CAGTG 1 cut(s) 189
Csp6I GTAC 1 cut(s) 258
CviJI RGCY 3 cut(s) 95, 337, 357
CviKI_1 RGCY 3 cut(s) 95, 337, 357
CviQI GTAC 1 cut(s) 258
DpnI GATC 2 cut(s) 12, 59
DpnII GATC 2 cut(s) 10, 57
Eco57I CTGAAG 1 cut(s) 58
FaiI YATR 5 cut(s) 66, 107, 129, 195, 272
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 174, 316, 352, 355
FokI GGATG 3 cut(s) 31, 155, 205
Fsp4HI GCNGC 4 cut(s) 174, 316, 352, 355
FspBI CTAG 2 cut(s) 84, 358
GluI GCNGC 4 cut(s) 174, 316, 352, 355
HapII CCGG 1 cut(s) 91
HinfI GANTC 3 cut(s) 87, 286, 303
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 133, 191
HpyCH4III ACNGT 2 cut(s) 184, 332
HpyCH4V TGCA 2 cut(s) 101, 315
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 57
LpnPI CCDG 6 cut(s) 68, 104, 165, 193, 235, 275
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 3 cut(s) 53, 88, 133
MaeI CTAG 2 cut(s) 84, 358
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 12, 59
MboI GATC 2 cut(s) 10, 57
MboII GAAGA 3 cut(s) 61, 64, 242
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 162, 168, 242
MlyI GAGTC 3 cut(s) 81, 295, 297
MnlI CCTC 1 cut(s) 341
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 162
NciI CCSGG 1 cut(s) 92
NdeII GATC 2 cut(s) 10, 57
PkrI GCNGC 4 cut(s) 175, 317, 353, 356
PleI GAGTC 3 cut(s) 81, 294, 297
PpsI GAGTC 3 cut(s) 81, 294, 297
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SatI GCNGC 4 cut(s) 174, 316, 352, 355
Sau3AI GATC 2 cut(s) 10, 57
ScaI AGTACT 1 cut(s) 259
SchI GAGTC 3 cut(s) 81, 295, 297
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 36, 154, 202, 359
SfaNI GCATC 3 cut(s) 53, 88, 133
Sse9I AATT 3 cut(s) 162, 168, 242
SsiI CCGC 2 cut(s) 173, 351
SspMI CTAG 2 cut(s) 84, 358
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 184, 332
TasI AATT 3 cut(s) 162, 168, 242
TatI WGTACW 1 cut(s) 257
TauI GCSGC 2 cut(s) 176, 354
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 315, 354
TspDTI ATGAA 2 cut(s) 17, 210
TspRI CASTG 1 cut(s) 189
XspI CTAG 2 cut(s) 84, 358
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.