Rh6CG191400

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002073
Physical Location & Seq
Forward (+)
31400442 .. 31418749
18308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG191400.1

Sequence Viewer

Length: 642 bp
ATGGGATGTATAAAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCGGCTGTTTGATCGCAAATTTGTAGATGCAGTTTTGAACGAGTGGCAAAAGACAATGATGGATTTACCTGCCGGCTTTCGGCAAGCTTATGAAATGGGATTGGTCAGCTCCGCTCAAATGGTAAGATTCCTAGCAACCAATGCCAGACCAACCACTACTAGGTTCATTTCTCGTTCACTTCCTGATGGGGCTGATGCAATCATATCAAAAATACAAGCTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAACAATTGTAATTGCGGCAGATACAGTAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAAAGGATGCTGAACCAACGCTATTAATTACCTCTGATCAAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTAGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACTAGATGAAGCCATTGAGAAGCTG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

214

Amino Acids

24.09

Weight (kDa)

5.73

Isoelectric Point (pI)

23.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 93 - 213 1.6e-11 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 2 cut(s) 189, 347
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 46
AfiI CCNNNNNNNGG 2 cut(s) 156, 237
AgsI TTSAA 2 cut(s) 115, 505
AluBI AGCT 5 cut(s) 164, 186, 296, 379, 640
AluI AGCT 5 cut(s) 164, 186, 296, 379, 640
AlwI GGATC 1 cut(s) 547
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 95
AseI ATTAAT 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 589
AvaII GGWCC 1 cut(s) 589
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 539
BccI CCATC 4 cut(s) 130, 257, 374, 481
BceAI ACGGC 1 cut(s) 509
BclI TGATCA 1 cut(s) 433
BfaI CTAG 5 cut(s) 72, 209, 237, 516, 620
BfuAI ACCTGC 1 cut(s) 154
BglII AGATCT 2 cut(s) 45, 600
BisI GCNGC 2 cut(s) 348, 528
BlsI GCNGC 2 cut(s) 349, 529
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 589
BmiI GGNNCC 1 cut(s) 590
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 5 cut(s) 41, 94, 262, 307, 394
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 237
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 383
BseGI GGATG 6 cut(s) 11, 32, 322, 366, 409, 473
BseLI CCNNNNNNNGG 2 cut(s) 156, 237
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 539
BshFI GGCC 1 cut(s) 373
BsiSI CCGG 3 cut(s) 79, 150, 370
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 156, 237
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 1 cut(s) 373
Bsp143I GATC 5 cut(s) 45, 88, 433, 539, 600
BspACI CCGC 2 cut(s) 189, 347
BspANI GGCC 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 590
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 547
BsrBI CCGCTC 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 5 cut(s) 45, 88, 433, 539, 600
Bst4CI ACNGT 2 cut(s) 358, 535
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 2 cut(s) 151, 162
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 6 cut(s) 11, 32, 322, 366, 409, 473
BstKTI GATC 5 cut(s) 48, 91, 436, 542, 603
BstMBI GATC 5 cut(s) 45, 88, 433, 539, 600
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 527
BstSNI TACGTA 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 3 cut(s) 45, 539, 600
BstYI RGATCY 3 cut(s) 45, 539, 600
BsuRI GGCC 1 cut(s) 373
BtsCI GGATG 6 cut(s) 11, 32, 322, 366, 409, 473
BtsIMutI CAGTG 1 cut(s) 540
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 151, 162
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 589
CviAII CATG 2 cut(s) 524, 611
DdeI CTNAG 1 cut(s) 375
DpnI GATC 5 cut(s) 47, 90, 435, 541, 602
DpnII GATC 5 cut(s) 45, 88, 433, 539, 600
Eco105I TACGTA 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 46
FaeI CATG 2 cut(s) 527, 614
FaiI YATR 8 cut(s) 11, 54, 168, 281, 303, 450, 525, 612
FaqI GGGAC 1 cut(s) 602
FatI CATG 2 cut(s) 523, 610
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 348, 528
FokI GGATG 6 cut(s) 18, 19, 329, 353, 416, 460
Fsp4HI GCNGC 2 cut(s) 348, 528
FspBI CTAG 5 cut(s) 72, 209, 237, 516, 620
GluI GCNGC 2 cut(s) 348, 528
HaeIII GGCC 1 cut(s) 373
HapII CCGG 3 cut(s) 79, 150, 370
Hin1II CATG 2 cut(s) 527, 614
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 3 cut(s) 75, 204, 570
HpaII CCGG 3 cut(s) 79, 150, 370
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 2 cut(s) 260, 516
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 307, 446
HpyCH4III ACNGT 2 cut(s) 358, 535
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 107, 275, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 2 cut(s) 527, 614
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 5 cut(s) 45, 88, 433, 539, 600
LmnI GCTCC 2 cut(s) 191, 384
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 5 cut(s) 41, 94, 262, 307, 394
MaeI CTAG 5 cut(s) 72, 209, 237, 516, 620
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 25, 550
MalI GATC 5 cut(s) 47, 90, 435, 541, 602
MbiI CCGCTC 1 cut(s) 191
MboI GATC 5 cut(s) 45, 88, 433, 539, 600
MboII GAAGA 3 cut(s) 49, 52, 497
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 3 cut(s) 45, 539, 600
MluCI AATT 5 cut(s) 95, 336, 342, 423, 497
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 2 cut(s) 439, 512
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 2 cut(s) 422, 561
MspI CCGG 3 cut(s) 79, 150, 370
MunI CAATTG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 218
NaeI GCCGGC 1 cut(s) 151
NdeII GATC 5 cut(s) 45, 88, 433, 539, 600
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 527, 614
NlaIV GGNNCC 1 cut(s) 590
NspI RCATGY 1 cut(s) 527
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 204, 570
PkrI GCNGC 2 cut(s) 349, 529
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 1 cut(s) 589
PsuI RGATCY 3 cut(s) 45, 539, 600
SaqAI TTAA 2 cut(s) 422, 561
SatI GCNGC 2 cut(s) 348, 528
Sau3AI GATC 5 cut(s) 45, 88, 433, 539, 600
Sau96I GGNCC 1 cut(s) 589
SchI GAGTC 1 cut(s) 69
SfaNI GCATC 5 cut(s) 41, 94, 262, 307, 394
SinI GGWCC 1 cut(s) 589
SnaBI TACGTA 1 cut(s) 397
Sse9I AATT 5 cut(s) 95, 336, 342, 423, 497
SsiI CCGC 2 cut(s) 189, 347
SspMI CTAG 5 cut(s) 72, 209, 237, 516, 620
TaaI ACNGT 2 cut(s) 358, 535
TaiI ACGT 1 cut(s) 399
TaqII GACCGA 1 cut(s) 606
TasI AATT 5 cut(s) 95, 336, 342, 423, 497
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 204, 570
Tru1I TTAA 2 cut(s) 422, 561
Tru9I TTAA 2 cut(s) 422, 561
TscAI CASTG 1 cut(s) 540
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 5 cut(s) 183, 232, 465, 627, 639
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 589
VspI ATTAAT 1 cut(s) 422
XapI RAATTY 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 1 cut(s) 527
XspI CTAG 5 cut(s) 72, 209, 237, 516, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.