Rorug06G0301800

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002073
Physical Location & Seq
Forward (+)
45330032 .. 45331395
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0301800.1

Sequence Viewer

Length: 1065 bp
ATGGCTACCGGGTGGTGCGATTCTGTTCCGAATTACCTTGTCTCTCTCGGTGAAAGGCTGGCAGTTTTCTGGAACAAGTTTATCACTGCAGTGCGGAAATCACTCGGCGCTGATCAAGTTCCTCTTCTTATGCTTCCGAAGAGGATTGATGCCGCCATGGTTCAGTTTTACTCCGTCGCAAAAGGTGAGATCTACAACGCCAATCTCCCAGAGACCAGTGGTAAGGTCTGCTTTGCTTCCCTAGGATGGCTGCTTACTGTAACTAAGGATCAAGGGGAATTGAAATTTAATATGCTCCACCCATCAAATCATCATGCCAAAATTCAACTTCCTGGTTTGCTGCACTATCCGCTCCAGAATATTTGGAAGTTTGTTTTGTCGTCCGATCCTCGTTCCACATTGGATTATATATTCATGTTTCAGACAGCTACTAGTTTGGGATTTTGCAGACCAGGACTCGGCGGCCAAGGTTGGAAACATCTCATATTTGAGGGCCACAATTTCATTAGGGATCTCACACACTATCAAGGAAGTTTCTACGTTGTGGACCATTCTAGCCGTGTTTCTGTTGTTTGTGAAATTGATGACCCTAAGCGAGCACATTTGAGTGTTGTTGCTCCAGAGATTCCCAGTAAGGAGCAACTTCTAGGTCCTATGAAGGGCATTAAACAGCCATATCTGGTGGAATCTGCAGGGTCCCTATTGGTGGTTTTGTGTACTTCCTACCATAATCATTATGAATCAACTATTGGCTGCAGGGTTTTCAAGGTCCCATTCAGTAATGGCAATTCATGGTCCGACTCAGAGGTAAAGGATTTGGGTAATAGAGCCCTCTTCTTGAGTAACAGCAGCTCTTCATTCTCTATCGAGGTCTCAGGCAATTCCGGATGCAAGCCCAATTGCATATATTTCATGAACAGCAAAAGCGTCTCTCCATTCGTTGACTTAGATGTTGGTATTTTTAATATGGAGGATGGGACAATTGATCGAGACTTCTGCAATTCCTTCAATACCGGGTTTGAAGAAATCAGAGAATCCCATCTATGGATTCAACCGAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

354

Amino Acids

39.59

Weight (kDa)

6.45

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 56 - 322 1.1e-43 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 884
AciI CCGC 4 cut(s) 94, 153, 350, 462
AclWI GGATC 3 cut(s) 276, 380, 519
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 2 cut(s) 284, 321
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 5 cut(s) 246, 458, 659, 706, 1044
AgsI TTSAA 6 cut(s) 283, 326, 766, 1009, 1022, 1052
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 2 cut(s) 331, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 428, 852
AluI AGCT 2 cut(s) 428, 852
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 5 cut(s) 46, 206, 877, 934, 984
AlwI GGATC 3 cut(s) 276, 380, 519
Aor13HI TCCGGA 1 cut(s) 884
AoxI GGCC 2 cut(s) 463, 493
ApeKI GCWGC 4 cut(s) 250, 340, 753, 849
ApoI RAATTY 2 cut(s) 284, 321
AspA2I CCTAGG 1 cut(s) 241
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 6 cut(s) 493, 547, 650, 696, 769, 795
AsuC2I CCSGG 2 cut(s) 10, 1015
AsuHPI GGTGA 2 cut(s) 62, 197
AvaII GGWCC 5 cut(s) 547, 650, 696, 769, 795
AvrII CCTAGG 1 cut(s) 241
BanII GRGCYC 1 cut(s) 832
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 4 cut(s) 237, 327, 740, 861
BccI CCATC 4 cut(s) 240, 310, 968, 1047
BceAI ACGGC 1 cut(s) 543
BcgI CGANNNNNNTGC 2 cut(s) 978, 1012
BciT130I CCWGG 2 cut(s) 333, 453
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 2 cut(s) 10, 1015
BcoDI GTCTC 5 cut(s) 46, 206, 877, 934, 984
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 4 cut(s) 242, 432, 555, 647
BfmI CTRYAG 3 cut(s) 87, 690, 754
BfoI RGCGCY 1 cut(s) 111
BglII AGATCT 1 cut(s) 189
BisI GCNGC 6 cut(s) 153, 251, 341, 463, 754, 850
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 6 cut(s) 154, 252, 342, 464, 755, 851
Bme1390I CCNGG 4 cut(s) 10, 333, 453, 1015
Bme18I GGWCC 5 cut(s) 547, 650, 696, 769, 795
BmgT120I GGNCC 6 cut(s) 493, 547, 650, 696, 769, 795
BmiI GGNNCC 3 cut(s) 697, 698, 771
BmrFI CCNGG 4 cut(s) 10, 333, 453, 1015
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 139, 878
BmuI ACTGGG 1 cut(s) 624
BpmI CTGGAG 2 cut(s) 338, 603
Bpu10I CCTNAGC 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 859
BpuMI CCSGG 2 cut(s) 10, 1015
BsaI GGTCTC 2 cut(s) 206, 877
BsaJI CCNNGG 3 cut(s) 156, 241, 466
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 5 cut(s) 246, 458, 659, 706, 1044
Bse1I ACTGG 2 cut(s) 216, 630
BseAI TCCGGA 1 cut(s) 884
BseBI CCWGG 2 cut(s) 333, 453
BseDI CCNNGG 3 cut(s) 156, 241, 466
BseGI GGATG 3 cut(s) 251, 893, 979
BseLI CCNNNNNNNGG 5 cut(s) 246, 458, 659, 706, 1044
BseMII CTCAG 2 cut(s) 816, 888
BseNI ACTGG 2 cut(s) 216, 630
BseXI GCAGC 4 cut(s) 237, 327, 740, 861
BsgI GTGCAG 1 cut(s) 326
BshFI GGCC 2 cut(s) 465, 495
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 3 cut(s) 9, 885, 1014
BslFI GGGAC 3 cut(s) 682, 755, 991
BslI CCNNNNNNNGG 5 cut(s) 246, 458, 659, 706, 1044
BsmAI GTCTC 5 cut(s) 46, 206, 877, 934, 984
BsmBI CGTCTC 1 cut(s) 934
BsmFI GGGAC 3 cut(s) 682, 755, 991
BsnI GGCC 2 cut(s) 465, 495
Bso31I GGTCTC 2 cut(s) 206, 877
Bsp1286I GDGCHC 2 cut(s) 601, 832
Bsp13I TCCGGA 1 cut(s) 884
Bsp143I GATC 6 cut(s) 112, 189, 268, 385, 511, 985
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 4 cut(s) 94, 153, 350, 462
BspANI GGCC 2 cut(s) 465, 495
BspCNI CTCAG 2 cut(s) 815, 887
BspEI TCCGGA 1 cut(s) 884
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 3 cut(s) 697, 698, 771
BspMAI CTGCAG 3 cut(s) 91, 694, 758
BspPI GGATC 3 cut(s) 276, 380, 519
BspQI GCTCTTC 1 cut(s) 859
BspTNI GGTCTC 2 cut(s) 206, 877
BsrBI CCGCTC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 216, 630
BssECI CCNNGG 3 cut(s) 156, 241, 466
BssMI GATC 6 cut(s) 112, 189, 268, 385, 511, 985
BssT1I CCWWGG 3 cut(s) 156, 241, 466
Bst2UI CCWGG 2 cut(s) 333, 453
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 4 cut(s) 129, 134, 839, 859
BstC8I GCNNGC 3 cut(s) 60, 597, 893
BstDEI CTNAG 5 cut(s) 264, 591, 802, 874, 946
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 251, 893, 979
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 6 cut(s) 115, 192, 271, 388, 514, 988
BstMAI GTCTC 5 cut(s) 46, 206, 877, 934, 984
BstMBI GATC 6 cut(s) 112, 189, 268, 385, 511, 985
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 2 cut(s) 333, 453
BstSCI CCNGG 4 cut(s) 8, 331, 451, 1013
BstSFI CTRYAG 3 cut(s) 87, 690, 754
BstV1I GCAGC 4 cut(s) 237, 327, 740, 861
BstX2I RGATCY 2 cut(s) 189, 511
BstYI RGATCY 2 cut(s) 189, 511
BsuRI GGCC 2 cut(s) 465, 495
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 251, 893, 979
BtsI GCAGTG 2 cut(s) 84, 96
BtsIMutI CAGTG 3 cut(s) 84, 96, 223
Cac8I GCNNGC 3 cut(s) 60, 597, 893
CciI TCATGA 1 cut(s) 912
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 6 cut(s) 493, 547, 650, 696, 769, 795
CseI GACGC 1 cut(s) 916
Csp6I GTAC 1 cut(s) 717
CviAII CATG 5 cut(s) 157, 314, 415, 792, 913
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 5 cut(s) 264, 591, 802, 874, 946
DpnI GATC 6 cut(s) 114, 191, 270, 387, 513, 987
DpnII GATC 6 cut(s) 112, 189, 268, 385, 511, 985
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 4 cut(s) 129, 134, 839, 859
EarI CTCTTC 4 cut(s) 129, 134, 839, 859
Eco130I CCWWGG 3 cut(s) 156, 241, 466
Eco24I GRGCYC 1 cut(s) 832
Eco31I GGTCTC 2 cut(s) 206, 877
Eco47I GGWCC 5 cut(s) 547, 650, 696, 769, 795
EcoO109I RGGNCCY 3 cut(s) 650, 696, 769
EcoRII CCWGG 2 cut(s) 331, 451
EcoT14I CCWWGG 3 cut(s) 156, 241, 466
EcoT38I GRGCYC 1 cut(s) 832
ErhI CCWWGG 3 cut(s) 156, 241, 466
Esp3I CGTCTC 1 cut(s) 934
FaeI CATG 5 cut(s) 160, 317, 418, 795, 916
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 215, 247
FaqI GGGAC 3 cut(s) 682, 755, 991
FatI CATG 5 cut(s) 156, 313, 414, 791, 912
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 6 cut(s) 153, 251, 341, 463, 754, 850
FokI GGATG 3 cut(s) 258, 900, 986
FriOI GRGCYC 1 cut(s) 832
Fsp4HI GCNGC 6 cut(s) 153, 251, 341, 463, 754, 850
FspBI CTAG 4 cut(s) 242, 432, 555, 647
GlaI GCGC 1 cut(s) 109
GluI GCNGC 6 cut(s) 153, 251, 341, 463, 754, 850
GsuI CTGGAG 2 cut(s) 338, 603
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 465, 495
HapII CCGG 3 cut(s) 9, 885, 1014
HgaI GACGC 1 cut(s) 916
HhaI GCGC 1 cut(s) 110
Hin1II CATG 5 cut(s) 160, 317, 418, 795, 916
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 8 cut(s) 20, 456, 625, 686, 740, 800, 1034, 1048
HpaII CCGG 3 cut(s) 9, 885, 1014
HphI GGTGA 2 cut(s) 62, 197
Hpy166II GTNNAC 3 cut(s) 547, 717, 943
Hpy188I TCNGA 8 cut(s) 30, 138, 385, 423, 799, 805, 1031, 1064
Hpy188III TCNNGA 7 cut(s) 70, 355, 620, 838, 885, 913, 989
Hpy8I GTNNAC 3 cut(s) 547, 717, 943
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 652, 1015
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 8 cut(s) 89, 343, 447, 692, 756, 891, 903, 999
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 5 cut(s) 264, 591, 802, 874, 946
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 5 cut(s) 160, 317, 418, 795, 916
HspAI GCGC 1 cut(s) 108
KflI GGGWCCC 1 cut(s) 696
Kpn2I TCCGGA 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 6 cut(s) 112, 189, 268, 385, 511, 985
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 4 cut(s) 300, 357, 622, 637
Lsp1109I GCAGC 4 cut(s) 237, 327, 740, 861
LweI GCATC 2 cut(s) 139, 878
MaeI CTAG 4 cut(s) 242, 432, 555, 647
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 259, 842
MalI GATC 6 cut(s) 114, 191, 270, 387, 513, 987
MbiI CCGCTC 1 cut(s) 352
MboI GATC 6 cut(s) 112, 189, 268, 385, 511, 985
MboII GAAGA 5 cut(s) 116, 151, 826, 846, 1034
MfeI CAATTG 2 cut(s) 898, 981
MflI RGATCY 2 cut(s) 189, 511
MhlI GDGCHC 2 cut(s) 601, 832
MlyI GAGTC 2 cut(s) 450, 794
MmeI TCCRAC 2 cut(s) 452, 822
MnlI CCTC 8 cut(s) 132, 135, 399, 484, 799, 842, 862, 964
MroI TCCGGA 1 cut(s) 884
MseI TTAA 3 cut(s) 288, 666, 963
MslI CAYNNNNRTG 2 cut(s) 89, 606
MspI CCGG 3 cut(s) 9, 885, 1014
MspR9I CCNGG 4 cut(s) 10, 333, 453, 1015
MunI CAATTG 2 cut(s) 898, 981
MvaI CCWGG 2 cut(s) 333, 453
MwoI GCNNNNNNNGC 1 cut(s) 349
NciI CCSGG 2 cut(s) 10, 1015
NcoI CCATGG 1 cut(s) 156
NdeII GATC 6 cut(s) 112, 189, 268, 385, 511, 985
NlaIII CATG 5 cut(s) 160, 317, 418, 795, 916
NlaIV GGNNCC 3 cut(s) 697, 698, 771
NmeAIII GCCGAG 2 cut(s) 84, 438
OliI CACNNNNGTG 1 cut(s) 89
PagI TCATGA 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 859
PfeI GAWTC 6 cut(s) 20, 625, 686, 740, 1034, 1048
PkrI GCNGC 6 cut(s) 154, 252, 342, 464, 755, 851
PleI GAGTC 2 cut(s) 450, 794
PpsI GAGTC 2 cut(s) 450, 794
PpuMI RGGWCCY 3 cut(s) 650, 696, 769
Psp5II RGGWCCY 3 cut(s) 650, 696, 769
Psp6I CCWGG 2 cut(s) 331, 451
PspGI CCWGG 2 cut(s) 331, 451
PspN4I GGNNCC 3 cut(s) 697, 698, 771
PspPI GGNCC 6 cut(s) 493, 547, 650, 696, 769, 795
PspPPI RGGWCCY 3 cut(s) 650, 696, 769
PstI CTGCAG 3 cut(s) 91, 694, 758
PsuI RGATCY 2 cut(s) 189, 511
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
RseI CAYNNNNRTG 2 cut(s) 89, 606
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 3 cut(s) 288, 666, 963
SatI GCNGC 6 cut(s) 153, 251, 341, 463, 754, 850
Sau3AI GATC 6 cut(s) 112, 189, 268, 385, 511, 985
Sau96I GGNCC 6 cut(s) 493, 547, 650, 696, 769, 795
SchI GAGTC 2 cut(s) 450, 794
ScrFI CCNGG 4 cut(s) 10, 333, 453, 1015
SduI GDGCHC 2 cut(s) 601, 832
SfaNI GCATC 2 cut(s) 139, 878
SfcI CTRYAG 3 cut(s) 87, 690, 754
SinI GGWCC 5 cut(s) 547, 650, 696, 769, 795
SmiMI CAYNNNNRTG 2 cut(s) 89, 606
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
SpeI ACTAGT 1 cut(s) 431
SsiI CCGC 4 cut(s) 94, 153, 350, 462
SspI AATATT 1 cut(s) 361
SspMI CTAG 4 cut(s) 242, 432, 555, 647
StyD4I CCNGG 4 cut(s) 8, 331, 451, 1013
StyI CCWWGG 3 cut(s) 156, 241, 466
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 867, 988
TatI WGTACW 1 cut(s) 716
TauI GCSGC 2 cut(s) 155, 465
TfiI GAWTC 6 cut(s) 20, 625, 686, 740, 1034, 1048
Tru1I TTAA 3 cut(s) 288, 666, 963
Tru9I TTAA 3 cut(s) 288, 666, 963
TscAI CASTG 3 cut(s) 91, 96, 223
TseI GCWGC 4 cut(s) 250, 340, 753, 849
TspDTI ATGAA 8 cut(s) 403, 493, 671, 753, 780, 846, 901, 929
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 3 cut(s) 91, 96, 223
VpaK11BI GGWCC 5 cut(s) 547, 650, 696, 769, 795
XapI RAATTY 2 cut(s) 284, 321
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 4 cut(s) 242, 432, 555, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.