Rroxscaffold_7G00167140

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002073
Physical Location & Seq
Reverse (-)
8392281 .. 8396189
3909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167140.1

Sequence Viewer

Length: 609 bp
ATGGAAACCAATTCTTCTCCTTCGTTCAAGACTGCAGACATTGACGAGAAAAGCATCCGAAAGGAGAAACCGGAGGAGTTGGTTATGGCTGATGCAATCATATCAAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCAACAATTGTAATTGCGGCAGACACAGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAAAGGATGCTGAACCAACGCTATTAATTACCTCTGATCAAGTGGTAGTCTATGGAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCGCGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGATTGAGGAAGGGACGGTGCTCAAAGTTGCCGGGGGACTGATAATAGAGCATCCTCTGATTCTTCCCTTTGTCAAAGAAGTGGTAGGGACTACTGATAGTGTGATGGGACTTCCAAAAGATATAACGGAGAGACTTCTTAAAGAAGCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

202

Amino Acids

22.16

Weight (kDa)

4.87

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 73 - 200 3e-25 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 307
AciI CCGC 2 cut(s) 161, 307
AclWI GGATC 1 cut(s) 361
AgsI TTSAA 2 cut(s) 28, 319
AluBI AGCT 3 cut(s) 193, 454, 602
AluI AGCT 3 cut(s) 193, 454, 602
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 1 cut(s) 361
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 341
AseI ATTAAT 1 cut(s) 236
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 1 cut(s) 487
AvaII GGWCC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 353
BccI CCATC 3 cut(s) 188, 295, 553
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 580
BfmI CTRYAG 2 cut(s) 33, 605
BglII AGATCT 1 cut(s) 414
BisI GCNGC 3 cut(s) 162, 308, 342
BlsI GCNGC 3 cut(s) 163, 309, 343
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 487
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 5 cut(s) 63, 82, 127, 208, 514
BmuI ACTGGG 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 487
BsaAI YACGTR 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 6 cut(s) 54, 142, 180, 223, 287, 505
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 3 cut(s) 71, 184, 486
BslFI GGGAC 5 cut(s) 416, 481, 504, 556, 576
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 5 cut(s) 416, 481, 504, 556, 576
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 3 cut(s) 247, 353, 414
BspACI CCGC 2 cut(s) 161, 307
BspANI GGCC 1 cut(s) 187
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 404
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 361
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 3 cut(s) 247, 353, 414
Bst4CI ACNGT 2 cut(s) 349, 472
BstBAI YACGTR 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 6 cut(s) 54, 142, 180, 223, 287, 505
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 3 cut(s) 250, 356, 417
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 3 cut(s) 247, 353, 414
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 2 cut(s) 33, 605
BstSNI TACGTA 1 cut(s) 211
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 353, 414
BstYI RGATCY 2 cut(s) 353, 414
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 6 cut(s) 54, 142, 180, 223, 287, 505
BtsIMutI CAGTG 1 cut(s) 354
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 403
CviAII CATG 2 cut(s) 338, 425
CviJI RGCY 7 cut(s) 89, 179, 187, 193, 443, 454, 602
CviKI_1 RGCY 7 cut(s) 89, 179, 187, 193, 443, 454, 602
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 249, 355, 416
DpnII GATC 3 cut(s) 247, 353, 414
Eco105I TACGTA 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 403
FaeI CATG 2 cut(s) 341, 428
FaiI YATR 7 cut(s) 86, 101, 123, 264, 339, 426, 578
FaqI GGGAC 5 cut(s) 416, 481, 504, 556, 576
FatI CATG 2 cut(s) 337, 424
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 162, 308, 342
FokI GGATG 6 cut(s) 41, 149, 167, 230, 274, 492
Fsp4HI GCNGC 3 cut(s) 162, 308, 342
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 162, 308, 342
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 187
HapII CCGG 3 cut(s) 71, 184, 486
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 341, 428
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 2 cut(s) 384, 514
HpaII CCGG 3 cut(s) 71, 184, 486
Hpy188I TCNGA 3 cut(s) 59, 247, 513
Hpy188III TCNNGA 2 cut(s) 28, 330
HpyAV CCTTC 3 cut(s) 30, 127, 458
HpyCH4III ACNGT 2 cut(s) 349, 472
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 35, 95, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 341, 428
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 247, 353, 414
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 9 cut(s) 84, 197, 210, 262, 304, 315, 366, 447, 499
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 5 cut(s) 63, 82, 127, 208, 514
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 249, 355, 416
MboI GATC 3 cut(s) 247, 353, 414
MboII GAAGA 3 cut(s) 6, 311, 509
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 353, 414
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 5 cut(s) 10, 150, 156, 237, 311
MnlI CCTC 6 cut(s) 67, 253, 260, 326, 454, 519
MseI TTAA 3 cut(s) 236, 375, 594
MspI CCGG 3 cut(s) 71, 184, 486
MspR9I CCNGG 1 cut(s) 487
MunI CAATTG 1 cut(s) 150
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 487
NdeII GATC 3 cut(s) 247, 353, 414
NlaIII CATG 2 cut(s) 341, 428
NlaIV GGNNCC 1 cut(s) 404
NspI RCATGY 1 cut(s) 341
PfeI GAWTC 2 cut(s) 384, 514
PkrI GCNGC 3 cut(s) 163, 309, 343
Ppu21I YACGTR 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 353, 414
SaqAI TTAA 3 cut(s) 236, 375, 594
SatI GCNGC 3 cut(s) 162, 308, 342
Sau3AI GATC 3 cut(s) 247, 353, 414
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 477
SetI ASST 7 cut(s) 195, 213, 245, 271, 375, 456, 604
SfaNI GCATC 5 cut(s) 63, 82, 127, 208, 514
SfcI CTRYAG 2 cut(s) 33, 605
SinI GGWCC 1 cut(s) 403
SnaBI TACGTA 1 cut(s) 211
Sse9I AATT 5 cut(s) 10, 150, 156, 237, 311
SsiI CCGC 2 cut(s) 161, 307
StyD4I CCNGG 1 cut(s) 485
TaaI ACNGT 2 cut(s) 349, 472
TaiI ACGT 1 cut(s) 213
TaqII GACCGA 1 cut(s) 420
TasI AATT 5 cut(s) 10, 150, 156, 237, 311
TauI GCSGC 2 cut(s) 164, 310
TfiI GAWTC 2 cut(s) 384, 514
Tru1I TTAA 3 cut(s) 236, 375, 594
Tru9I TTAA 3 cut(s) 236, 375, 594
TscAI CASTG 1 cut(s) 354
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 441, 453
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 403
VspI ATTAAT 1 cut(s) 236
XceI RCATGY 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.