RLG00000009605

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002073
Physical Location & Seq
Reverse (-)
55262791 .. 55264116
1326 bp
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UTR
Exon/CDS
Intron
RLM00000009605

Sequence Viewer

Length: 318 bp
ATGGAAACTTCTCAGGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAAAGGATGCTGAACCAACGCTATTAATTACCTCTGATCAAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGTTTTGTTTTGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

106

Amino Acids

11.77

Weight (kDa)

4.76

Isoelectric Point (pI)

18.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 13 - 99 1.3e-12 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 205
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 2 cut(s) 37, 298
AluI AGCT 2 cut(s) 37, 298
AlwI GGATC 1 cut(s) 205
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 185
AseI ATTAAT 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 197
BccI CCATC 2 cut(s) 32, 139
BceAI ACGGC 1 cut(s) 167
BclI TGATCA 1 cut(s) 91
BglII AGATCT 1 cut(s) 258
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 248
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 41
BseGI GGATG 3 cut(s) 24, 67, 131
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 91, 197, 258
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 41
BssMI GATC 3 cut(s) 91, 197, 258
Bst4CI ACNGT 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 12, 33
BstF5I GGATG 3 cut(s) 24, 67, 131
BstKTI GATC 3 cut(s) 94, 200, 261
BstMBI GATC 3 cut(s) 91, 197, 258
BstNSI RCATGY 1 cut(s) 185
BstSNI TACGTA 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 2 cut(s) 197, 258
BstYI RGATCY 2 cut(s) 197, 258
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 3 cut(s) 24, 67, 131
BtsIMutI CAGTG 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 2 cut(s) 182, 269
CviJI RGCY 5 cut(s) 23, 31, 37, 287, 298
CviKI_1 RGCY 5 cut(s) 23, 31, 37, 287, 298
DdeI CTNAG 2 cut(s) 12, 33
DpnI GATC 3 cut(s) 93, 199, 260
DpnII GATC 3 cut(s) 91, 197, 258
Eco105I TACGTA 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 247
FaeI CATG 2 cut(s) 185, 272
FaiI YATR 3 cut(s) 108, 183, 270
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 181, 268
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 3 cut(s) 11, 74, 118
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 28
Hin1II CATG 2 cut(s) 185, 272
HinfI GANTC 2 cut(s) 228, 312
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 91, 317
Hpy188III TCNNGA 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 12, 33
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 2 cut(s) 185, 272
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 91, 197, 258
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 7 cut(s) 41, 54, 106, 148, 159, 210, 291
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 52
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 93, 199, 260
MboI GATC 3 cut(s) 91, 197, 258
MboII GAAGA 1 cut(s) 155
MflI RGATCY 2 cut(s) 197, 258
MluCI AATT 2 cut(s) 81, 155
MnlI CCTC 2 cut(s) 97, 170
MseI TTAA 2 cut(s) 80, 219
MspI CCGG 1 cut(s) 28
NdeII GATC 3 cut(s) 91, 197, 258
NlaIII CATG 2 cut(s) 185, 272
NlaIV GGNNCC 1 cut(s) 248
NspI RCATGY 1 cut(s) 185
PfeI GAWTC 2 cut(s) 228, 312
PkrI GCNGC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 2 cut(s) 197, 258
SaqAI TTAA 2 cut(s) 80, 219
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 3 cut(s) 91, 197, 258
Sau96I GGNCC 1 cut(s) 247
SetI ASST 6 cut(s) 39, 57, 89, 115, 219, 300
SfaNI GCATC 1 cut(s) 52
SinI GGWCC 1 cut(s) 247
SnaBI TACGTA 1 cut(s) 55
Sse9I AATT 2 cut(s) 81, 155
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 57
TaqII GACCGA 1 cut(s) 264
TasI AATT 2 cut(s) 81, 155
TfiI GAWTC 2 cut(s) 228, 312
Tru1I TTAA 2 cut(s) 80, 219
Tru9I TTAA 2 cut(s) 80, 219
TscAI CASTG 1 cut(s) 198
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 123, 285, 297
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 80
XceI RCATGY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.