Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Forward (+)

19711541 .. 19716059

Gene Structure 4519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCTCGCTGCTTCCCATTTCCTCCACCAGGATATGAGAAGAAGATTAGAACTGACGAAGCAGACCCTCTTGTAAAGGACAAGTACAAGGAAAAGAAGCATAAGAAGGATAAAGAAAAGAGAGAGGGTAAAGAGAAAAAGAGTAAAGATAGAAGCAAAGACAAACAGAAGGAAAGAAAGGAGAAAAAAGACAAACATAAAGATCAGAAAGACAAGGAGAAAGGTAAAGAAAAAGGCAAACCTTTGGAGGAGAAGAAAGCTGAGCTGCTGACAAATGCCGGGCACAGAGAGAATCGTGTAACAGATACGGTGCAGAATAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACGAAGAAGCAACAGGAAGTCAGAGTGCACAAAGGATTGATCATCCTAACCAAAAAAATGTAGGAATAACAGAAAAAGCATTTGAGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATGACAATAAGAGAATCAATAACCAGAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAGTTTCTCGAGTATCATTTGGTGCAGATCATAAAAGAGCTGAGGTGATGGGTAAACCAATGGAGAACAGAGACCAGGTGAGGCAAACAGAATCAGCTGAGAAGAGTCACCGCAAGGAAAATGTGACCAAGAGTGAGAAACCAAGGGATCAAGAAGGGGTAAAGAAGACTGAAGCAAAGGATAAAGACAGAAATAAAGAGAAGAAAGAGGAAAAAACAGAGTCGATAAATAAAACTCGTCAGGAGAAACCAAAATTGATACGAGGGCCCAAGTTAGAGGAAAGAGAAAAGGACTCTCCGGATTTAAGAAATTGCAAGCTGCCTGACGTTTCACGGACAAGCATCAAGAACCTTCACACCGAGGGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCCTGTATGGTGAGTTATTCTCTGATCCAATTCTCTGTCTGGTGAATGAGGAGTGTAGTTGCCATATTAACCATCGTATGATATATGGTTTGGTACTTAGAAGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

41.16

Weight (kDa)

9.51

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	850
AciI	CCGC	2 cut(s)	533, 664
AclWI	GGATC	4 cut(s)	371, 708, 945, 974
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	3 cut(s)	86, 345, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	28, 351, 627
AluBI	AGCT	5 cut(s)	260, 265, 593, 650, 871
AluI	AGCT	5 cut(s)	260, 265, 593, 650, 871
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	9, 618
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	4 cut(s)	371, 708, 945, 974
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	561
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	1 cut(s)	818
ApaI	GGGCCC	1 cut(s)	822
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	9, 265, 871
AspS9I	GGNCC	3 cut(s)	349, 818, 819
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	5 cut(s)	610, 643, 653, 977, 1009
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	3 cut(s)	285, 403, 822
BanII	GRGCYC	1 cut(s)	822
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	403
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	252, 858
BccI	CCATC	2 cut(s)	595, 1035
BciT130I	CCWGG	3 cut(s)	30, 353, 629
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	9, 618
BisI	GCNGC	4 cut(s)	10, 266, 534, 872
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	4 cut(s)	11, 267, 535, 873
Bme1390I	CCNGG	4 cut(s)	30, 280, 353, 629
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	3 cut(s)	349, 818, 819
BmiI	GGNNCC	1 cut(s)	820
BmrFI	CCNGG	4 cut(s)	30, 280, 353, 629
BmsI	GCATC	1 cut(s)	903
BpiI	GAAGAC	1 cut(s)	725
BplI	GAGNNNNNCTC	2 cut(s)	959, 991
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	695, 912
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	3 cut(s)	30, 353, 629
BseDI	CCNNGG	2 cut(s)	695, 912
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	252, 585, 642
BseRI	GAGGAG	2 cut(s)	263, 1019
BseSI	GKGCMC	3 cut(s)	285, 403, 822
BseXI	GCAGC	2 cut(s)	252, 858
BsgI	GTGCAG	2 cut(s)	332, 597
BshFI	GGCC	1 cut(s)	820
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	279, 851
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	9, 618
BsnI	GGCC	1 cut(s)	820
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	561
Bsp120I	GGGCCC	1 cut(s)	818
Bsp1286I	GDGCHC	3 cut(s)	285, 403, 822
Bsp13I	TCCGGA	1 cut(s)	850
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	2 cut(s)	533, 664
BspANI	GGCC	1 cut(s)	820
BspCNI	CTCAG	3 cut(s)	253, 586, 643
BspEI	TCCGGA	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	820
BspPI	GGATC	4 cut(s)	371, 708, 945, 974
BspTNI	GGTCTC	1 cut(s)	618
BsrGI	TGTACA	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	695, 912
BssMI	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	3 cut(s)	30, 353, 629
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	869
BstDEI	CTNAG	4 cut(s)	261, 594, 651, 1052
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	7 cut(s)	205, 366, 415, 583, 703, 940, 982
BstMAI	GTCTC	2 cut(s)	9, 618
BstMBI	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
BstNI	CCWGG	3 cut(s)	30, 353, 629
BstSCI	CCNGG	4 cut(s)	28, 278, 351, 627
BstSLI	GKGCMC	3 cut(s)	285, 403, 822
BstV1I	GCAGC	2 cut(s)	252, 858
BstV2I	GAAGAC	1 cut(s)	725
BsuRI	GGCC	1 cut(s)	820
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	869
CaiI	CAGNNNCTG	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	349, 818, 819
CsiI	ACCWGGT	1 cut(s)	627
Csp6I	GTAC	3 cut(s)	85, 344, 1049
CviJI	RGCY	8 cut(s)	260, 265, 465, 483, 593, 650, 820, 871
CviKI_1	RGCY	8 cut(s)	260, 265, 465, 483, 593, 650, 820, 871
CviQI	GTAC	3 cut(s)	85, 344, 1049
DdeI	CTNAG	4 cut(s)	261, 594, 651, 1052
DpnI	GATC	7 cut(s)	204, 365, 414, 582, 702, 939, 981
DpnII	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	822
Eco31I	GGTCTC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	561
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	349, 818
EcoRII	CCWGG	3 cut(s)	28, 351, 627
EcoT14I	CCWWGG	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	695
FauNDI	CATATG	1 cut(s)	942
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	10, 266, 534, 872
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	4 cut(s)	10, 266, 534, 872
GluI	GCNGC	4 cut(s)	10, 266, 534, 872
HaeIII	GGCC	1 cut(s)	820
HapII	CCGG	2 cut(s)	279, 851
HinfI	GANTC	8 cut(s)	292, 332, 507, 644, 658, 773, 845, 954
HpaII	CCGG	2 cut(s)	279, 851
HphI	GGTGA	5 cut(s)	610, 643, 653, 977, 1009
Hpy166II	GTNNAC	2 cut(s)	401, 608
Hpy188I	TCNGA	5 cut(s)	207, 368, 396, 547, 979
Hpy188III	TCNNGA	5 cut(s)	561, 704, 794, 851, 898
Hpy8I	GTNNAC	2 cut(s)	401, 608
HpyAV	CCTTC	6 cut(s)	100, 163, 354, 701, 914, 928
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	879
HpyCH4V	TGCA	5 cut(s)	313, 401, 554, 578, 867
HpyF3I	CTNAG	4 cut(s)	261, 594, 651, 1052
HpySE526I	ACGT	1 cut(s)	879
Kpn2I	TCCGGA	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
Lsp1109I	GCAGC	2 cut(s)	252, 858
LweI	GCATC	1 cut(s)	903
MabI	ACCWGGT	1 cut(s)	627
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	3 cut(s)	298, 659, 676
MalI	GATC	7 cut(s)	204, 365, 414, 582, 702, 939, 981
MboI	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
MboII	GAAGA	9 cut(s)	52, 55, 265, 389, 485, 532, 667, 730, 766
MfeI	CAATTG	1 cut(s)	468
MhlI	GDGCHC	3 cut(s)	285, 403, 822
MluCI	AATT	4 cut(s)	468, 806, 862, 984
MlyI	GAGTC	4 cut(s)	341, 667, 782, 839
MroI	TCCGGA	1 cut(s)	850
MseI	TTAA	2 cut(s)	857, 1023
MspA1I	CMGCKG	2 cut(s)	533, 650
MspI	CCGG	2 cut(s)	279, 851
MspR9I	CCNGG	4 cut(s)	30, 280, 353, 629
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	3 cut(s)	30, 353, 629
NciI	CCSGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
NlaIV	GGNNCC	1 cut(s)	820
NmuCI	GTSAC	2 cut(s)	659, 676
PaeR7I	CTCGAG	1 cut(s)	561
PfeI	GAWTC	4 cut(s)	292, 507, 644, 954
PkrI	GCNGC	4 cut(s)	11, 267, 535, 873
PleI	GAGTC	4 cut(s)	340, 666, 781, 839
PpsI	GAGTC	4 cut(s)	340, 666, 781, 839
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	3 cut(s)	28, 351, 627
PspGI	CCWGG	3 cut(s)	28, 351, 627
PspN4I	GGNNCC	1 cut(s)	820
PspOMI	GGGCCC	1 cut(s)	818
PspPI	GGNCC	3 cut(s)	349, 818, 819
PspPPI	RGGWCCY	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	86, 345, 1050
RsaNI	GTAC	3 cut(s)	85, 344, 1049
SaqAI	TTAA	2 cut(s)	857, 1023
SatI	GCNGC	4 cut(s)	10, 266, 534, 872
Sau3AI	GATC	7 cut(s)	202, 363, 412, 580, 700, 937, 979
Sau96I	GGNCC	3 cut(s)	349, 818, 819
SchI	GAGTC	4 cut(s)	341, 667, 782, 839
ScrFI	CCNGG	4 cut(s)	30, 280, 353, 629
SduI	GDGCHC	3 cut(s)	285, 403, 822
SexAI	ACCWGGT	1 cut(s)	627
SfaNI	GCATC	1 cut(s)	903
Sfr274I	CTCGAG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	4 cut(s)	468, 806, 862, 984
SsiI	CCGC	2 cut(s)	533, 664
StyD4I	CCNGG	4 cut(s)	28, 278, 351, 627
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	2 cut(s)	562, 776
TasI	AATT	4 cut(s)	468, 806, 862, 984
TatI	WGTACW	2 cut(s)	84, 343
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	4 cut(s)	292, 507, 644, 954
Tru1I	TTAA	2 cut(s)	857, 1023
Tru9I	TTAA	2 cut(s)	857, 1023
TseFI	GTSAC	2 cut(s)	659, 676
TseI	GCWGC	3 cut(s)	9, 265, 871
Tsp45I	GTSAC	2 cut(s)	659, 676
TspGWI	ACGGA	2 cut(s)	901, 946
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	27
XhoI	CTCGAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.