Rroxscaffold_5G00357630
MYB Family

Myb-like protein X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003553
Physical Location & Seq
Forward (+)
37331227 .. 37339421
8195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357630.1

Sequence Viewer

Length: 1596 bp
ATGTCGCGCTGCTTTCCATTTCCACCACCAGGATATGAGAAAAAAGCTAGGACAGATGATGTGGATGTGCTAAAAAAGGAGAAGCAGAGAGAAAAGAAGCATAAAAAGGACAAAGAAAAAAGAGAAAAAGAGAAAAGTGAGAAAGATAGAAGTGATGGAAAACATCGGGAAAAGAAAGACAAGAAGGAAAAGAACAGAGACAAAAAGAAGGACAAGGAGAAAGACACAGACAAAGTTAAAGATAAACTTGGTACTTCAGATGGAACTAGAATTCCAGGTAAAACTGAGAATCATGTTGCAGAGAAACTCGTTCATAAAGATGACAGAGACAAGAGAGATGCTAGCCAAGTTGGAGGTTACCAGCCAGAAAAGCTTGGTCATAACAGTCACCTGCCTGCGGAGAACAGGAACTCTGTATCGGTGGAGGTGGCTAGGAAGACTAAGGATGAGGCCAGAGGAATTGGGAACCAGTTGGTTGAGAAGATTAGTGGTTCAGACCGCAAAAAAGATGAGGGGATGGTCAGATTGGTGGCCAAGGGAACTGGCATGTTGGCTGAAGTTAAGGAAACTAGCAAGGACAAGAGAGCTGATATCCGAAAGCCTGATGTGCAAGAAGTCAGAGTTGCAACACGGGTTAGTGCAAGTGCAATGGTGCAGAACCCTGGCGGAATGGTTCAACCCAAAGTTAAAGGATTTCCGAAACCACTGGAGAGCAATGTTGAAAGAAAGACTGATGGAAAAGAAAAGACCAAAGAGAAGGAAAGTGATGATAAACGAGGGGAAAAGCGCAAGGATAAAGATAGAGAGAAGAAAACCCAGGGGAGAGATAAGGATAGAGATAAAGAGAAGAAGAAGGAGGAGAAAGCAAAGAAGAAGAATGCGTCAAAGACTGCAGAGCCAGATAAAGAGAAGAAAAAGGAAGACAAAGCAAATGAGAAAAATGGTTCTAAGCATGCAGAACCAGACAAATCTAAAGAGACCAATAAAGAGGTTTGTATTGATTCCCAGTACAGAAAACCCTCCCAACTTCCGAAGGACAACTACAAATCTGCTGATGCTGAGGCGAATCTTAAGAAACGAAAGGACTTGACGACAAATGGAGTTTTGCATGCCAATGAAATTAGGCCCAATAAATTGCTGAGACCCTCTTCTTCCTCTCATCCATTGACTGAAAATGGAAGGACACTGGAGCCTTGCCAAACGTCCATCGCATATGTTTCAGATAAGCAGGGAGGAGCCAATAGTGTTAAAGTGGAGGGAAAGGAACGTAAGAAGAATGGCATTATTGAAGCGAGATCGTCATCTGTCTCCCCTGCAAAGCCTACTTCTATAGCTGCACAAGCTGATCCGTTTGCTGAAGCATCTATGAGACCGCCCCATCCAGATTCCAGATATCTAAGTGAGGTTTATATGGTTCCAAAAATGGACAAATTGTCTGATGACGATCAAGACTGGTTGTTTGGTTGCAGTGATACCAAATCAAAGAAGCCTAAGATGGAATCTTCACCGGATGAGGAGACGGCAGAAGTGTGGTCAGAAGCTCTGCGGATAGAGTCTGCTGATGTTTGTGCTTTGCCATATGTCATTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

60.0

Weight (kDa)

9.48

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 399
AccII CGCG 1 cut(s) 7
AciI CCGC 5 cut(s) 398, 499, 666, 1373, 1546
AclWI GGATC 1 cut(s) 1340
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 3 cut(s) 240, 576, 1377
AfaI GTAC 2 cut(s) 253, 1010
AfiI CCNNNNNNNGG 2 cut(s) 29, 397
AflII CTTAAG 1 cut(s) 1070
AgsI TTSAA 3 cut(s) 677, 722, 1289
AhdI GACNNNNNGTC 1 cut(s) 1432
AjnI CCWGG 4 cut(s) 28, 274, 661, 816
AloI GAACNNNNNNTCC 2 cut(s) 256, 288
AluBI AGCT 6 cut(s) 47, 373, 587, 1334, 1343, 1541
AluI AGCT 6 cut(s) 47, 373, 587, 1334, 1343, 1541
Alw26I GTCTC 7 cut(s) 192, 321, 971, 1135, 1312, 1363, 1511
AlwI GGATC 1 cut(s) 1340
AoxI GGCC 3 cut(s) 450, 531, 1124
ApeKI GCWGC 2 cut(s) 9, 1334
ApoI RAATTY 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 1442, 1474
AspLEI GCGC 2 cut(s) 9, 789
AspS9I GGNCC 1 cut(s) 1125
AsuHPI GGTGA 2 cut(s) 380, 1497
AsuNHI GCTAGC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 533
BarI GAAGNNNNNNTAC 2 cut(s) 1025, 1057
BbsI GAAGAC 2 cut(s) 443, 927
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 1 cut(s) 1321
BccI CCATC 7 cut(s) 149, 254, 511, 728, 1214, 1386, 1489
BceAI ACGGC 1 cut(s) 1536
BciT130I CCWGG 4 cut(s) 30, 276, 663, 818
BcoDI GTCTC 7 cut(s) 192, 321, 971, 1135, 1312, 1363, 1511
BfaI CTAG 5 cut(s) 48, 267, 342, 432, 570
BfmI CTRYAG 2 cut(s) 891, 1329
BfrI CTTAAG 1 cut(s) 1070
BfuAI ACCTGC 1 cut(s) 399
BisI GCNGC 2 cut(s) 10, 1335
BlsI GCNGC 2 cut(s) 11, 1336
Bme1390I CCNGG 4 cut(s) 30, 276, 663, 818
BmeRI GACNNNNNGTC 1 cut(s) 1432
BmgT120I GGNCC 1 cut(s) 1125
BmiI GGNNCC 4 cut(s) 467, 1191, 1237, 1416
BmrFI CCNGG 4 cut(s) 30, 276, 663, 818
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 3 cut(s) 328, 1045, 1370
BmtI GCTAGC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 1000
BpiI GAAGAC 2 cut(s) 443, 927
BpmI CTGGAG 2 cut(s) 728, 1208
Bpu10I CCTNAGC 1 cut(s) 1059
BsaBI GATNNNNATC 2 cut(s) 1300, 1443
BsaI GGTCTC 3 cut(s) 971, 1135, 1363
BsaJI CCNNGG 4 cut(s) 534, 661, 816, 817
BsaWI WCCGGW 1 cut(s) 1507
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 397
Bse1I ACTGG 6 cut(s) 469, 547, 711, 1006, 1191, 1457
Bse3DI GCAATG 2 cut(s) 654, 721
Bse8I GATNNNNATC 2 cut(s) 1300, 1443
BseBI CCWGG 4 cut(s) 30, 276, 663, 818
BseDI CCNNGG 4 cut(s) 534, 661, 816, 817
BseGI GGATG 6 cut(s) 70, 451, 522, 1159, 1378, 1516
BseJI GATNNNNATC 2 cut(s) 1300, 1443
BseLI CCNNNNNNNGG 2 cut(s) 29, 397
BseMI GCAATG 2 cut(s) 654, 721
BseMII CTCAG 3 cut(s) 276, 1050, 1130
BseNI ACTGG 6 cut(s) 469, 547, 711, 1006, 1191, 1457
BseRI GAGGAG 3 cut(s) 872, 1248, 1529
BseXI GCAGC 1 cut(s) 1321
BsgI GTGCAG 2 cut(s) 674, 1320
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 3 cut(s) 452, 533, 1126
BsiSI CCGG 1 cut(s) 1508
BslI CCNNNNNNNGG 2 cut(s) 29, 397
BsmAI GTCTC 7 cut(s) 192, 321, 971, 1135, 1312, 1363, 1511
BsmBI CGTCTC 1 cut(s) 1511
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 3 cut(s) 452, 533, 1126
Bso31I GGTCTC 3 cut(s) 971, 1135, 1363
Bsp143I GATC 3 cut(s) 1295, 1345, 1444
BspACI CCGC 5 cut(s) 398, 499, 666, 1373, 1546
BspANI GGCC 3 cut(s) 452, 533, 1126
BspCNI CTCAG 3 cut(s) 277, 1051, 1131
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 467, 1191, 1237, 1416
BspMAI CTGCAG 1 cut(s) 895
BspMI ACCTGC 1 cut(s) 399
BspOI GCTAGC 1 cut(s) 345
BspPI GGATC 1 cut(s) 1340
BspTI CTTAAG 1 cut(s) 1070
BspTNI GGTCTC 3 cut(s) 971, 1135, 1363
BsrDI GCAATG 2 cut(s) 654, 721
BsrI ACTGG 6 cut(s) 469, 547, 711, 1006, 1191, 1457
BssECI CCNNGG 4 cut(s) 534, 661, 816, 817
BssMI GATC 3 cut(s) 1295, 1345, 1444
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 4 cut(s) 30, 276, 663, 818
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 1153
BstAFI CTTAAG 1 cut(s) 1070
BstC8I GCNNGC 4 cut(s) 343, 396, 954, 1110
BstDEI CTNAG 7 cut(s) 285, 441, 948, 1059, 1139, 1397, 1491
BstEII GGTNACC 1 cut(s) 356
BstF5I GGATG 6 cut(s) 70, 451, 522, 1159, 1378, 1516
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 2 cut(s) 9, 789
BstKTI GATC 3 cut(s) 1298, 1348, 1447
BstMAI GTCTC 7 cut(s) 192, 321, 971, 1135, 1312, 1363, 1511
BstMBI GATC 3 cut(s) 1295, 1345, 1444
BstMWI GCNNNNNNNGC 3 cut(s) 370, 607, 1340
BstNI CCWGG 4 cut(s) 30, 276, 663, 818
BstNSI RCATGY 3 cut(s) 550, 956, 1112
BstPI GGTNACC 1 cut(s) 356
BstSCI CCNGG 4 cut(s) 28, 274, 661, 816
BstSFI CTRYAG 2 cut(s) 891, 1329
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 1321
BstV2I GAAGAC 2 cut(s) 443, 927
BsuRI GGCC 3 cut(s) 452, 533, 1126
BtgZI GCGATG 1 cut(s) 1192
BtsCI GGATG 6 cut(s) 70, 451, 522, 1159, 1378, 1516
BtsI GCAGTG 1 cut(s) 1474
BtsIMutI CAGTG 3 cut(s) 704, 1184, 1474
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 4 cut(s) 343, 396, 954, 1110
CfoI GCGC 2 cut(s) 9, 789
Cfr13I GGNCC 1 cut(s) 1125
CseI GACGC 1 cut(s) 870
Csp6I GTAC 2 cut(s) 252, 1009
CviAII CATG 4 cut(s) 293, 547, 953, 1109
CviQI GTAC 2 cut(s) 252, 1009
DdeI CTNAG 7 cut(s) 285, 441, 948, 1059, 1139, 1397, 1491
DpnI GATC 3 cut(s) 1297, 1347, 1446
DpnII GATC 3 cut(s) 1295, 1345, 1444
DriI GACNNNNNGTC 1 cut(s) 1432
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 1153
Eam1105I GACNNNNNGTC 1 cut(s) 1432
EarI CTCTTC 1 cut(s) 1153
EciI GGCGGA 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 534
Eco31I GGTCTC 3 cut(s) 971, 1135, 1363
Eco32I GATATC 2 cut(s) 592, 1394
Eco57I CTGAAG 3 cut(s) 240, 576, 1377
Eco91I GGTNACC 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 270
EcoRII CCWGG 4 cut(s) 28, 274, 661, 816
EcoRV GATATC 2 cut(s) 592, 1394
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 1511
FaeI CATG 4 cut(s) 296, 550, 956, 1112
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 4 cut(s) 292, 546, 952, 1108
FauNDI CATATG 2 cut(s) 1213, 1579
Fnu4HI GCNGC 2 cut(s) 10, 1335
FokI GGATG 6 cut(s) 77, 458, 529, 1146, 1365, 1523
Fsp4HI GCNGC 2 cut(s) 10, 1335
FspBI CTAG 5 cut(s) 48, 267, 342, 432, 570
GlaI GCGC 2 cut(s) 8, 788
GluI GCNGC 2 cut(s) 10, 1335
GsuI CTGGAG 2 cut(s) 728, 1208
HaeIII GGCC 3 cut(s) 452, 533, 1126
HapII CCGG 1 cut(s) 1508
HgaI GACGC 1 cut(s) 870
HhaI GCGC 2 cut(s) 9, 789
Hin1II CATG 4 cut(s) 296, 550, 956, 1112
Hin6I GCGC 2 cut(s) 7, 787
HinP1I GCGC 2 cut(s) 7, 787
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 6 cut(s) 289, 1001, 1066, 1385, 1499, 1553
HpaII CCGG 1 cut(s) 1508
HphI GGTGA 2 cut(s) 380, 1497
Hpy188III TCNNGA 4 cut(s) 167, 1382, 1389, 1448
HpyAV CCTTC 6 cut(s) 178, 202, 751, 847, 1027, 1173
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 2 cut(s) 1202, 1267
HpyF10VI GCNNNNNNNGC 3 cut(s) 370, 607, 1340
HpyF3I CTNAG 7 cut(s) 285, 441, 948, 1059, 1139, 1397, 1491
HpySE526I ACGT 2 cut(s) 1202, 1267
Hsp92II CATG 4 cut(s) 296, 550, 956, 1112
HspAI GCGC 2 cut(s) 7, 787
Kzo9I GATC 3 cut(s) 1295, 1345, 1444
LmnI GCTCC 2 cut(s) 1189, 1235
Lsp1109I GCAGC 1 cut(s) 1321
LweI GCATC 3 cut(s) 328, 1045, 1370
MaeI CTAG 5 cut(s) 48, 267, 342, 432, 570
MaeII ACGT 2 cut(s) 1202, 1267
MaeIII GTNAC 2 cut(s) 356, 386
MalI GATC 3 cut(s) 1297, 1347, 1446
MboI GATC 3 cut(s) 1295, 1345, 1444
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 5 cut(s) 270, 459, 1119, 1133, 1430
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 1562
MmeI TCCRAC 1 cut(s) 331
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 5 cut(s) 237, 561, 687, 1071, 1248
MslI CAYNNNNRTG 2 cut(s) 318, 1113
Msp20I TGGCCA 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 1 cut(s) 1508
MspR9I CCNGG 4 cut(s) 30, 276, 663, 818
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 4 cut(s) 30, 276, 663, 818
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 370, 607, 1340
NdeI CATATG 2 cut(s) 1213, 1579
NdeII GATC 3 cut(s) 1295, 1345, 1444
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 4 cut(s) 296, 550, 956, 1112
NlaIV GGNNCC 4 cut(s) 467, 1191, 1237, 1416
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 3 cut(s) 550, 956, 1112
PaeI GCATGC 2 cut(s) 956, 1112
PaqCI CACCTGC 1 cut(s) 399
PasI CCCWGGG 1 cut(s) 817
PctI GAATGC 1 cut(s) 883
PfeI GAWTC 5 cut(s) 289, 1001, 1066, 1385, 1499
PkrI GCNGC 2 cut(s) 11, 1336
PleI GAGTC 1 cut(s) 1561
PpsI GAGTC 1 cut(s) 1561
Psp6I CCWGG 4 cut(s) 28, 274, 661, 816
PspEI GGTNACC 1 cut(s) 356
PspGI CCWGG 4 cut(s) 28, 274, 661, 816
PspN4I GGNNCC 4 cut(s) 467, 1191, 1237, 1416
PspPI GGNCC 1 cut(s) 1125
PstI CTGCAG 1 cut(s) 895
RsaI GTAC 2 cut(s) 253, 1010
RsaNI GTAC 2 cut(s) 252, 1009
RseI CAYNNNNRTG 2 cut(s) 318, 1113
SaqAI TTAA 5 cut(s) 237, 561, 687, 1071, 1248
SatI GCNGC 2 cut(s) 10, 1335
Sau3AI GATC 3 cut(s) 1295, 1345, 1444
Sau96I GGNCC 1 cut(s) 1125
SchI GAGTC 1 cut(s) 1562
ScrFI CCNGG 4 cut(s) 30, 276, 663, 818
SfaNI GCATC 3 cut(s) 328, 1045, 1370
SfcI CTRYAG 2 cut(s) 891, 1329
SmiMI CAYNNNNRTG 2 cut(s) 318, 1113
SmlI CTYRAG 1 cut(s) 1070
SmoI CTYRAG 1 cut(s) 1070
SphI GCATGC 2 cut(s) 956, 1112
Sse9I AATT 5 cut(s) 270, 459, 1119, 1133, 1430
SsiI CCGC 5 cut(s) 398, 499, 666, 1373, 1546
SspMI CTAG 5 cut(s) 48, 267, 342, 432, 570
StyD4I CCNGG 4 cut(s) 28, 274, 661, 816
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 2 cut(s) 1205, 1270
TasI AATT 5 cut(s) 270, 459, 1119, 1133, 1430
TatI WGTACW 1 cut(s) 1008
TfiI GAWTC 5 cut(s) 289, 1001, 1066, 1385, 1499
Tru1I TTAA 5 cut(s) 237, 561, 687, 1071, 1248
Tru9I TTAA 5 cut(s) 237, 561, 687, 1071, 1248
TscAI CASTG 3 cut(s) 711, 1191, 1474
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 9, 1334
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 302, 1131
TspGWI ACGGA 1 cut(s) 1338
TspRI CASTG 3 cut(s) 711, 1191, 1474
Vha464I CTTAAG 1 cut(s) 1070
XapI RAATTY 1 cut(s) 270
XceI RCATGY 3 cut(s) 550, 956, 1112
XspI CTAG 5 cut(s) 48, 267, 342, 432, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.