Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Reverse (-)

13226946 .. 13236475

Gene Structure 9530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGTCTCGCTGCTTTCCATTTCCTCCACCTGGATATGAAAAAAAGGCTAGGAAGGATGATGTGGACTTGCTAAAAAAGGAGAAGCACAGAGAAAAGAAGCATAAGAAGGAAAAAAAAGACAAAGAGAAGAGAGAAAGTAAAGAAAAAAGTGAGAAAGACAGAAGTGATGGAAAGCATCGGGAAAAGAAAGACAAGAAGGAAAGAAACAGAGACAAGAAGAAGGATAAGGAGAAAGACAGGGACCCCGTTAAAGATAAAATTAGTCCTTCAGATGAGAAGAGAAATCTGGGGAAAACTGAGAGTTTTGGTGCAGAGAAATTCATTCCTAAAGAGTACAAAGATAACTGTGTTGACAAGAGATATACTGGGCAAGTTGGAGGTTATCAGGCCGAGAAGCTCAGTCAAAATCATCATCTGGCTGAGGAGAACCACAATTCTGTATTGTTGGAGTTGGGTAGGAGAACTAAAGATGAGGCCAGAGGAATTGGTAACCATGTGGTTGAGAAGATTTCTGAATCAGACCGAAAGAAGGATGAGGGGATGGTCAGATTGGCGGCTAAGGATGCTGACATTTTGGCCGAAGTCAAGGAAAAGAACAAGGACAAGAGAGTTGATGACAGAAAGACGGATGGGCAAGGCATCAGGGTTGCAGCACAGATTAGTGGGAACACAATGGTTCAAAACCCTGTTGGTATGGTTGAAACTAAAGTTGGAGGACTTTCCAGACCATTGGGGAGCAACGTGGATAGAAAGATTGATGGAAAAGAAAAGACCAAAGAGAAGGAAGGTGATGATAAACGAAGGGAGAAACGCAAGGAGAAAGATAGAGAGAAGAAAAAACAAGGGAAAGACAAGGACAAGGATAAAGAAAAGAAAAAGGAAGCGAAAGCAAAGGAGAAAAATGGATCTAAGAATGCAGAGCCAGGTAAAGAGAAGAAAAAGGAAGAGAAAGCAAAGGAGAAAAATGAATCTAAGAATGCAGAGCTGGATAAAGAGAAGAAAAAGGAAGAGAAAGCAAAGGAGACAAATGAATCTAAGAATGCAGAGCCAGATAAAATAAGAAAGAGCAATAAAGAGGATCATATAGACCCTCATTACGTTATAACCTCCCAACTTCCGAAAGACAGCAACAAAAGTGCTGGTGCTGATGGAAATCTTAAGAAACGGAAGGACTTGCAGACAAATGGAGTTTTGCATGCCAATGACATTAGGCCCAGTAAACTGCCGCGACCCTCTTCTTCCTCTCATCCATTAACGGTAAATGGAAGAACAGTGGAACCTTGCCAAACTTCCACCCCGTATGTTTCAGATAGGCTGGGATCAGCAAATAATGTTAAGGTGGACAATAAGGACTGCAAGATAAATGGCATCGTTGAATCTCCGTCATTGTCTGTCTCCCCTGCAAAGCTGACTTCTACAGCTGCACAGGCTGTTCCTGTTGCCGAAGCATCTGTGAGACCGCCCCATCCAGATTCCAGATATCTAAGCCAGGTTTATTTGGTTCCAAAGGTGGACGAAGTGCCTGATTATGACGATGAAGATTGGTTGTTTGGGTGCAGTGGTAACCAATCAAAGAAGCCCAAGGTGGAATCTTCAGGGGTTGAGGAGACACCTGAGGTATGGTCAGAGGCTCTGCGGATAGAGTCTGCTGATGTTCACGCTCTACCGTATGTCATTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

562

Amino Acids

63.53

Weight (kDa)

9.37

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1103
AccII	CGCG	1 cut(s)	1228
AciI	CCGC	4 cut(s)	554, 1226, 1460, 1636
AclWI	GGATC	3 cut(s)	913, 1086, 1327
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	252, 1578
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	29, 529
AflII	CTTAAG	1 cut(s)	1157
AgsI	TTSAA	3 cut(s)	680, 701, 1376
AjnI	CCWGG	3 cut(s)	28, 922, 1488
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	4 cut(s)	397, 985, 1408, 1421
AluI	AGCT	4 cut(s)	397, 985, 1408, 1421
Alw26I	GTCTC	6 cut(s)	9, 204, 1016, 1399, 1450, 1601
AlwI	GGATC	3 cut(s)	913, 1086, 1327
AoxI	GGCC	4 cut(s)	387, 474, 576, 1211
ApeKI	GCWGC	3 cut(s)	9, 650, 1421
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	241, 1212
AsuHPI	GGTGA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	1614
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	662, 1408
BccI	CCATC	6 cut(s)	161, 535, 623, 752, 1142, 1473
BciT130I	CCWGG	3 cut(s)	30, 924, 1490
BcoDI	GTCTC	6 cut(s)	9, 204, 1016, 1399, 1450, 1601
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	1416
BfrI	CTTAAG	1 cut(s)	1157
BisI	GCNGC	5 cut(s)	10, 555, 651, 1226, 1422
BlsI	GCNGC	5 cut(s)	11, 556, 652, 1227, 1423
Bme1390I	CCNGG	3 cut(s)	30, 924, 1490
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	241, 1212
BmiI	GGNNCC	4 cut(s)	242, 243, 1278, 1503
BmrFI	CCNGG	3 cut(s)	30, 924, 1490
BmrI	ACTGGG	2 cut(s)	375, 1209
BmsI	GCATC	5 cut(s)	184, 553, 648, 1377, 1457
BmuI	ACTGGG	2 cut(s)	375, 1209
Bpu10I	CCTNAGC	2 cut(s)	420, 558
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaI	GGTCTC	1 cut(s)	1450
BsaJI	CCNNGG	1 cut(s)	1581
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 529
Bse1I	ACTGG	2 cut(s)	370, 1215
Bse21I	CCTNAGG	1 cut(s)	1614
Bse8I	GATNNNNATC	1 cut(s)	1152
BseBI	CCWGG	3 cut(s)	30, 924, 1490
BseDI	CCNNGG	1 cut(s)	1581
BseGI	GGATG	7 cut(s)	61, 538, 546, 568, 634, 1246, 1465
BseJI	GATNNNNATC	1 cut(s)	1152
BseLI	CCNNNNNNNGG	2 cut(s)	29, 529
BseMII	CTCAG	4 cut(s)	288, 411, 412, 1605
BseNI	ACTGG	2 cut(s)	370, 1215
BseRI	GAGGAG	2 cut(s)	437, 1619
BseXI	GCAGC	2 cut(s)	662, 1408
BseYI	CCCAGC	1 cut(s)	1315
BsgI	GTGCAG	3 cut(s)	330, 1407, 1576
Bsh1236I	CGCG	1 cut(s)	1228
BshFI	GGCC	4 cut(s)	389, 476, 578, 1213
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	29, 529
BsmAI	GTCTC	6 cut(s)	9, 204, 1016, 1399, 1450, 1601
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	3 cut(s)	919, 982, 1045
BsnI	GGCC	4 cut(s)	389, 476, 578, 1213
Bso31I	GGTCTC	1 cut(s)	1450
Bsp143I	GATC	3 cut(s)	905, 1078, 1319
BspACI	CCGC	4 cut(s)	554, 1226, 1460, 1636
BspANI	GGCC	4 cut(s)	389, 476, 578, 1213
BspCNI	CTCAG	4 cut(s)	289, 411, 412, 1606
BspFNI	CGCG	1 cut(s)	1228
BspLI	GGNNCC	4 cut(s)	242, 243, 1278, 1503
BspPI	GGATC	3 cut(s)	913, 1086, 1327
BspTI	CTTAAG	1 cut(s)	1157
BspTNI	GGTCTC	1 cut(s)	1450
BsrI	ACTGG	2 cut(s)	370, 1215
BssECI	CCNNGG	1 cut(s)	1581
BssMI	GATC	3 cut(s)	905, 1078, 1319
BssT1I	CCWWGG	1 cut(s)	1581
Bst2UI	CCWGG	3 cut(s)	30, 924, 1490
Bst4CI	ACNGT	4 cut(s)	347, 1258, 1273, 1668
Bst6I	CTCTTC	5 cut(s)	122, 272, 939, 1002, 1240
BstAFI	CTTAAG	1 cut(s)	1157
BstC8I	GCNNGC	1 cut(s)	1197
BstDEI	CTNAG	9 cut(s)	297, 398, 420, 558, 909, 972, 1035, 1484, 1614
BstEII	GGTNACC	2 cut(s)	488, 1562
BstF5I	GGATG	7 cut(s)	61, 538, 546, 568, 634, 1246, 1465
BstFNI	CGCG	1 cut(s)	1228
BstKTI	GATC	3 cut(s)	908, 1081, 1322
BstMAI	GTCTC	6 cut(s)	9, 204, 1016, 1399, 1450, 1601
BstMBI	GATC	3 cut(s)	905, 1078, 1319
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 1427
BstNI	CCWGG	3 cut(s)	30, 924, 1490
BstNSI	RCATGY	1 cut(s)	1199
BstPI	GGTNACC	2 cut(s)	488, 1562
BstSCI	CCNGG	3 cut(s)	28, 922, 1488
BstSFI	CTRYAG	1 cut(s)	1416
BstUI	CGCG	1 cut(s)	1228
BstV1I	GCAGC	2 cut(s)	662, 1408
BstX2I	RGATCY	1 cut(s)	905
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	905
Bsu36I	CCTNAGG	1 cut(s)	1614
BsuRI	GGCC	4 cut(s)	389, 476, 578, 1213
BtsCI	GGATG	7 cut(s)	61, 538, 546, 568, 634, 1246, 1465
BtsI	GCAGTG	1 cut(s)	1564
BtsIMutI	CAGTG	2 cut(s)	1278, 1564
Cac8I	GCNNGC	1 cut(s)	1197
Cfr13I	GGNCC	2 cut(s)	241, 1212
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	494, 1196
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	9 cut(s)	297, 398, 420, 558, 909, 972, 1035, 1484, 1614
DpnI	GATC	3 cut(s)	907, 1080, 1321
DpnII	GATC	3 cut(s)	905, 1078, 1319
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	5 cut(s)	122, 272, 939, 1002, 1240
EarI	CTCTTC	5 cut(s)	122, 272, 939, 1002, 1240
Eco130I	CCWWGG	1 cut(s)	1581
Eco31I	GGTCTC	1 cut(s)	1450
Eco32I	GATATC	1 cut(s)	1481
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	252, 1578
Eco81I	CCTNAGG	1 cut(s)	1614
Eco91I	GGTNACC	2 cut(s)	488, 1562
EcoO109I	RGGNCCY	1 cut(s)	241
EcoO65I	GGTNACC	2 cut(s)	488, 1562
EcoRII	CCWGG	3 cut(s)	28, 922, 1488
EcoRV	GATATC	1 cut(s)	1481
EcoT14I	CCWWGG	1 cut(s)	1581
ErhI	CCWWGG	1 cut(s)	1581
FaeI	CATG	2 cut(s)	497, 1199
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	493, 1195
Fnu4HI	GCNGC	5 cut(s)	10, 555, 651, 1226, 1422
FokI	GGATG	7 cut(s)	68, 545, 553, 575, 641, 1233, 1452
Fsp4HI	GCNGC	5 cut(s)	10, 555, 651, 1226, 1422
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	5 cut(s)	10, 555, 651, 1226, 1422
GsaI	CCCAGC	1 cut(s)	1319
HaeIII	GGCC	4 cut(s)	389, 476, 578, 1213
Hin1II	CATG	2 cut(s)	497, 1199
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	7 cut(s)	515, 968, 1031, 1376, 1472, 1589, 1643
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	6 cut(s)	64, 352, 1220, 1342, 1513, 1657
Hpy188I	TCNGA	7 cut(s)	271, 514, 520, 548, 1119, 1309, 1627
Hpy188III	TCNNGA	4 cut(s)	179, 723, 1469, 1476
Hpy8I	GTNNAC	6 cut(s)	64, 352, 1220, 1342, 1513, 1657
HpyCH4III	ACNGT	4 cut(s)	347, 1258, 1273, 1668
HpyCH4IV	ACGT	2 cut(s)	741, 1098
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 1427
HpyF3I	CTNAG	9 cut(s)	297, 398, 420, 558, 909, 972, 1035, 1484, 1614
HpySE526I	ACGT	2 cut(s)	741, 1098
Hsp92II	CATG	2 cut(s)	497, 1199
KflI	GGGWCCC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	905, 1078, 1319
LmnI	GCTCC	1 cut(s)	735
Lsp1109I	GCAGC	2 cut(s)	662, 1408
LweI	GCATC	5 cut(s)	184, 553, 648, 1377, 1457
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	2 cut(s)	741, 1098
MaeIII	GTNAC	2 cut(s)	488, 1562
MalI	GATC	3 cut(s)	907, 1080, 1321
MboI	GATC	3 cut(s)	905, 1078, 1319
MflI	RGATCY	1 cut(s)	905
MluCI	AATT	4 cut(s)	258, 317, 433, 483
MlyI	GAGTC	1 cut(s)	1652
MmeI	TCCRAC	3 cut(s)	355, 426, 691
MseI	TTAA	4 cut(s)	249, 1158, 1253, 1335
MslI	CAYNNNNRTG	1 cut(s)	1200
MspA1I	CMGCKG	1 cut(s)	1421
MspCI	CTTAAG	1 cut(s)	1157
MspR9I	CCNGG	3 cut(s)	30, 924, 1490
Mva1269I	GAATGC	3 cut(s)	919, 982, 1045
MvaI	CCWGG	3 cut(s)	30, 924, 1490
MvnI	CGCG	1 cut(s)	1228
MwoI	GCNNNNNNNGC	2 cut(s)	563, 1427
NdeII	GATC	3 cut(s)	905, 1078, 1319
NlaIII	CATG	2 cut(s)	497, 1199
NlaIV	GGNNCC	4 cut(s)	242, 243, 1278, 1503
NmeAIII	GCCGAG	1 cut(s)	415
NspI	RCATGY	1 cut(s)	1199
PaeI	GCATGC	1 cut(s)	1199
PctI	GAATGC	3 cut(s)	919, 982, 1045
PfeI	GAWTC	6 cut(s)	515, 968, 1031, 1376, 1472, 1589
PkrI	GCNGC	5 cut(s)	11, 556, 652, 1227, 1423
PleI	GAGTC	1 cut(s)	1651
PpsI	GAGTC	1 cut(s)	1651
PpuMI	RGGWCCY	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	1103
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	3 cut(s)	28, 922, 1488
PspEI	GGTNACC	2 cut(s)	488, 1562
PspFI	CCCAGC	1 cut(s)	1315
PspGI	CCWGG	3 cut(s)	28, 922, 1488
PspN4I	GGNNCC	4 cut(s)	242, 243, 1278, 1503
PspPI	GGNCC	2 cut(s)	241, 1212
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	905
PvuII	CAGCTG	1 cut(s)	1421
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	1200
SaqAI	TTAA	4 cut(s)	249, 1158, 1253, 1335
SatI	GCNGC	5 cut(s)	10, 555, 651, 1226, 1422
Sau3AI	GATC	3 cut(s)	905, 1078, 1319
Sau96I	GGNCC	2 cut(s)	241, 1212
SchI	GAGTC	1 cut(s)	1652
ScrFI	CCNGG	3 cut(s)	30, 924, 1490
SfaNI	GCATC	5 cut(s)	184, 553, 648, 1377, 1457
SfcI	CTRYAG	1 cut(s)	1416
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	1200
SmlI	CTYRAG	1 cut(s)	1157
SmoI	CTYRAG	1 cut(s)	1157
SphI	GCATGC	1 cut(s)	1199
Sse9I	AATT	4 cut(s)	258, 317, 433, 483
SsiI	CCGC	4 cut(s)	554, 1226, 1460, 1636
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	28, 922, 1488
StyI	CCWWGG	1 cut(s)	1581
TaaI	ACNGT	4 cut(s)	347, 1258, 1273, 1668
TaiI	ACGT	2 cut(s)	744, 1101
TaqII	GACCGA	1 cut(s)	537
TasI	AATT	4 cut(s)	258, 317, 433, 483
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	2 cut(s)	557, 1228
TfiI	GAWTC	6 cut(s)	515, 968, 1031, 1376, 1472, 1589
Tru1I	TTAA	4 cut(s)	249, 1158, 1253, 1335
Tru9I	TTAA	4 cut(s)	249, 1158, 1253, 1335
TscAI	CASTG	2 cut(s)	1278, 1564
TseI	GCWGC	3 cut(s)	9, 650, 1421
TspDTI	ATGAA	5 cut(s)	51, 310, 981, 1044, 1551
TspGWI	ACGGA	3 cut(s)	641, 1180, 1371
TspRI	CASTG	2 cut(s)	1278, 1564
Vha464I	CTTAAG	1 cut(s)	1157
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	1199
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.