Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033890.1

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 978

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033890.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 703 bp

agagccagataaagagaagaaaaaggaagacaaagcaaatgagaaaaatggttctaagcatgcagaaccagacaaatctaaagagaccaataaagaggtttgtattgattcccagtacagaaaaccctcccaacttccgaaggacaactacaaatctgctgatgctgaggcgaaccttaagaaacgaaaggacttgacgacaaatggagttttgcatgccaatgaaattaggcccaataaattgctgagaccctcttcttcctctcatccattgactgaaaatggaaggacactggagccttgccaaacgtccatcccatatgtttcagataagcagggaggagccaatagtgttaaagtggagagtaaggaacgtaagaagaatggcattattgaaactagatcgtcatctgtttccccagcaaagcctacttctatagctgcacaagctgatccatttgctgaagcatctatgagaccgccccatccagattccagatatctaagtgaggtttatatggttccaaaaatggacaaattgtctgatgacgatcaagactggttgtttggttgcagtgataccaaatcaaagaagcctaagatggaatcttcaccggatgaggagacggcagaagtgtggtcagaagctctgcggatagagtcagctgatgtttgtgctttgccatatgtcattccatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.99

Weight (kDa)

6.54

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	480, 653
AclWI	GGATC	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	484
AfaI	GTAC	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	396
AhdI	GACNNNNNGTC	1 cut(s)	539
AluBI	AGCT	4 cut(s)	441, 450, 648, 666
AluI	AGCT	4 cut(s)	441, 450, 648, 666
Alw26I	GTCTC	4 cut(s)	78, 242, 470, 618
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	604
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
BbsI	GAAGAC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	3 cut(s)	321, 493, 596
BceAI	ACGGC	1 cut(s)	643
BcoDI	GTCTC	4 cut(s)	78, 242, 470, 618
BfaI	CTAG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	436
BfrI	CTTAAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
BmeRI	GACNNNNNGTC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	298, 344, 523
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	152, 477
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	166
BsaBI	GATNNNNATC	2 cut(s)	407, 550
BsaI	GGTCTC	3 cut(s)	78, 242, 470
BsaWI	WCCGGW	1 cut(s)	614
Bse1I	ACTGG	3 cut(s)	113, 298, 564
Bse8I	GATNNNNATC	2 cut(s)	407, 550
BseGI	GGATG	4 cut(s)	266, 313, 485, 623
BseJI	GATNNNNATC	2 cut(s)	407, 550
BseMII	CTCAG	2 cut(s)	157, 237
BseNI	ACTGG	3 cut(s)	113, 298, 564
BseRI	GAGGAG	2 cut(s)	355, 636
BseXI	GCAGC	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	615
BsmAI	GTCTC	4 cut(s)	78, 242, 470, 618
BsmBI	CGTCTC	1 cut(s)	618
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	3 cut(s)	78, 242, 470
Bsp143I	GATC	3 cut(s)	402, 452, 551
BspACI	CCGC	2 cut(s)	480, 653
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	158, 238
BspLI	GGNNCC	3 cut(s)	298, 344, 523
BspPI	GGATC	1 cut(s)	447
BspTI	CTTAAG	1 cut(s)	177
BspTNI	GGTCTC	3 cut(s)	78, 242, 470
BsrI	ACTGG	3 cut(s)	113, 298, 564
BssMI	GATC	3 cut(s)	402, 452, 551
Bst6I	CTCTTC	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	61, 217
BstDEI	CTNAG	5 cut(s)	55, 166, 246, 504, 598
BstF5I	GGATG	4 cut(s)	266, 313, 485, 623
BstKTI	GATC	3 cut(s)	405, 455, 554
BstMAI	GTCTC	4 cut(s)	78, 242, 470, 618
BstMBI	GATC	3 cut(s)	402, 452, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	63, 219
BstSFI	CTRYAG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	4 cut(s)	266, 313, 485, 623
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	291, 581
Cac8I	GCNNGC	2 cut(s)	61, 217
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	60, 216
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	5 cut(s)	55, 166, 246, 504, 598
DpnI	GATC	3 cut(s)	404, 454, 553
DpnII	GATC	3 cut(s)	402, 452, 551
DriI	GACNNNNNGTC	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	260
Eco31I	GGTCTC	3 cut(s)	78, 242, 470
Eco32I	GATATC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	2 cut(s)	63, 219
FatI	CATG	2 cut(s)	59, 215
FauNDI	CATATG	2 cut(s)	320, 686
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	4 cut(s)	253, 300, 472, 630
Fsp4HI	GCNGC	1 cut(s)	442
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	1 cut(s)	442
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	615
Hin1II	CATG	2 cut(s)	63, 219
HinfI	GANTC	4 cut(s)	108, 492, 606, 660
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	1 cut(s)	604
Hpy188I	TCNGA	4 cut(s)	139, 329, 545, 644
Hpy188III	TCNNGA	3 cut(s)	489, 496, 555
HpyAV	CCTTC	2 cut(s)	134, 280
HpyCH4IV	ACGT	2 cut(s)	309, 374
HpyCH4V	TGCA	4 cut(s)	63, 215, 444, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	5 cut(s)	55, 166, 246, 504, 598
HpySE526I	ACGT	2 cut(s)	309, 374
Hsp92II	CATG	2 cut(s)	63, 219
Kzo9I	GATC	3 cut(s)	402, 452, 551
LmnI	GCTCC	2 cut(s)	296, 342
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	152, 477
MaeI	CTAG	1 cut(s)	400
MaeII	ACGT	2 cut(s)	309, 374
MalI	GATC	3 cut(s)	404, 454, 553
MboI	GATC	3 cut(s)	402, 452, 551
MboII	GAAGA	6 cut(s)	29, 39, 247, 250, 392, 601
MluCI	AATT	3 cut(s)	226, 240, 537
MlyI	GAGTC	1 cut(s)	669
MnlI	CCTC	8 cut(s)	89, 137, 161, 263, 272, 333, 503, 614
MseI	TTAA	2 cut(s)	178, 355
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	666
MspCI	CTTAAG	1 cut(s)	177
MspI	CCGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	447
NdeI	CATATG	2 cut(s)	320, 686
NdeII	GATC	3 cut(s)	402, 452, 551
NlaIII	CATG	2 cut(s)	63, 219
NlaIV	GGNNCC	3 cut(s)	298, 344, 523
NspI	RCATGY	2 cut(s)	63, 219
PaeI	GCATGC	2 cut(s)	63, 219
PfeI	GAWTC	3 cut(s)	108, 492, 606
PkrI	GCNGC	1 cut(s)	443
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	298, 344, 523
PspPI	GGNCC	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	666
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	178, 355
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	3 cut(s)	402, 452, 551
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	669
SetI	ASST	9 cut(s)	100, 178, 312, 377, 443, 452, 514, 650, 668
SfaNI	GCATC	2 cut(s)	152, 477
SfcI	CTRYAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SphI	GCATGC	2 cut(s)	63, 219
Sse9I	AATT	3 cut(s)	226, 240, 537
SsiI	CCGC	2 cut(s)	480, 653
SspMI	CTAG	1 cut(s)	400
TaiI	ACGT	2 cut(s)	312, 377
TasI	AATT	3 cut(s)	226, 240, 537
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	108, 492, 606
Tru1I	TTAA	2 cut(s)	178, 355
Tru9I	TTAA	2 cut(s)	178, 355
TscAI	CASTG	2 cut(s)	298, 581
TseI	GCWGC	1 cut(s)	441
TspDTI	ATGAA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	298, 581
Vha464I	CTTAAG	1 cut(s)	177
XceI	RCATGY	2 cut(s)	63, 219
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.