Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Forward (+)

31974065 .. 31982098

Gene Structure 8034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG180900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTCGCGCTGCTTTCCATTTCCACCACCAGGATATGAGAAAAAAGCTAGGACAGATGATGTGGACGTGCTAAAAAAGGAGAAGCAGAGAGAAAAGAAGCATAAAAAGGATAAGAAGGACAAAGAAAAAAGAGAAAAAGAGAAAAGTGAGAAAGATAGAAGTGATGGAAAACATCGGGAAAAGAAAGACAAGAAGGAAAAGAACAGAGACAAAAAGAAGGACAAGGAGAAAGACACAGACAAAGTTAAAGATAAACTTGGTACTTCAGATGGAACTAGAATTCCAGGTAAAACTGAGAATCATGTTGCAGAGAAACTCGTTCATAAAGATGACAAAGACAAGAGAGATGCTAGCCAAGTTGGAGGTTACCAGCCAGAAAAGCTTGGTCAGAACAGTCACCTGCGTGTGGAGAACAGGAACTCTGTATCGGTGGAGGTGGCTAGGAAGACTAAGGATGAGGCCAGAGGAATTGGGAACCAGTTGGTTGAGAAGATTAGTGGTTCAGACCGCAAAAAAGATGAGGGGATGGTCAGATTGGTGGCCAAGGGAACTGGCATGTTGGCTGAAGTTAAGGAAACTAGCAAGGACAAGAGAGATGATATCCGAAAGCCTGATGTGCAAGAAGTCAGAGTTGCAACACGGGTTAGTGGAAGTGCAATGGTGCAGAACCCTGGCGGAATGGTTCAACCCAAAGTTAAAGGATTTCCGAAACCACTGGAGAGCAATGTTGAAAGAAAGACTGATGGAAAAGAACAGACCAAAGAGAAGGAAGGTGATGATAAACGAGGGGAAAAGCGCAAGGATAAAGATAGAGAGAAGAAAACCCAGGGGAGAGATAAGGATAGAGATAAAGAGAAGAAGAAGGAGGAGAAAGCAAAGAAGAAGAATGCGTCAAAGACTGCAGAGCCAGATAAAGAGAAGAAAAAGGAAGACAAAGCAAATGAGAAAAATGGTTCTAAGCATGCAGAACCAGACAAATCTAAAGAGACCAATAAAGAGGTTTGTATTGATTCCCAGTACAGAAAACCCTCCCAACTTCCGAAGGACAACTACAAATCTGCTGATGCTGAGGCGAACCTTAAGAAACGAAAGGACTTGACGACAAATGGAGTTTTGCATGGTGAGTGTTTTTTCATGATGTACCGTCATTGCAGCCCAATCAATGCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

44.75

Weight (kDa)

9.67

Isoelectric Point (pI)

20.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	408
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	508, 675
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	2 cut(s)	249, 585
AfaI	GTAC	3 cut(s)	262, 1019, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	29, 406
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	2 cut(s)	686, 731
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	4 cut(s)	28, 283, 670, 825
AleI	CACNNNNGTG	1 cut(s)	402
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	2 cut(s)	47, 382
AluI	AGCT	2 cut(s)	47, 382
Alw26I	GTCTC	2 cut(s)	201, 980
AoxI	GGCC	2 cut(s)	459, 540
ApeKI	GCWGC	2 cut(s)	9, 1152
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	9, 798
AsuHPI	GGTGA	3 cut(s)	389, 785, 1133
AsuNHI	GCTAGC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	1034, 1066
BbsI	GAAGAC	2 cut(s)	452, 936
BbvCI	CCTCAGC	1 cut(s)	1068
BbvI	GCAGC	1 cut(s)	1164
BccI	CCATC	4 cut(s)	158, 263, 520, 737
BciT130I	CCWGG	4 cut(s)	30, 285, 672, 827
BcoDI	GTCTC	2 cut(s)	201, 980
BfaI	CTAG	5 cut(s)	48, 276, 351, 441, 579
BfmI	CTRYAG	1 cut(s)	900
BfrI	CTTAAG	1 cut(s)	1079
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	10, 1153
BlsI	GCNGC	2 cut(s)	11, 1154
Bme1390I	CCNGG	4 cut(s)	30, 285, 672, 827
BmgBI	CACGTC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	4 cut(s)	30, 285, 672, 827
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	2 cut(s)	337, 1054
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	1009
BpiI	GAAGAC	2 cut(s)	452, 936
BpmI	CTGGAG	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	1068
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	4 cut(s)	543, 670, 825, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 406
Bse1I	ACTGG	4 cut(s)	478, 556, 720, 1015
Bse3DI	GCAATG	3 cut(s)	663, 730, 1147
BseBI	CCWGG	4 cut(s)	30, 285, 672, 827
BseDI	CCNNGG	4 cut(s)	543, 670, 825, 826
BseGI	GGATG	2 cut(s)	460, 531
BseLI	CCNNNNNNNGG	2 cut(s)	29, 406
BseMI	GCAATG	3 cut(s)	663, 730, 1147
BseMII	CTCAG	2 cut(s)	285, 1059
BseNI	ACTGG	4 cut(s)	478, 556, 720, 1015
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	1164
BsgI	GTGCAG	1 cut(s)	683
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	461, 542
BslI	CCNNNNNNNGG	2 cut(s)	29, 406
BsmAI	GTCTC	2 cut(s)	201, 980
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	2 cut(s)	461, 542
Bso31I	GGTCTC	1 cut(s)	980
BspACI	CCGC	2 cut(s)	508, 675
BspANI	GGCC	2 cut(s)	461, 542
BspCNI	CTCAG	2 cut(s)	286, 1060
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	1079
BspTNI	GGTCTC	1 cut(s)	980
BsrDI	GCAATG	3 cut(s)	663, 730, 1147
BsrI	ACTGG	4 cut(s)	478, 556, 720, 1015
BssECI	CCNNGG	4 cut(s)	543, 670, 825, 826
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	4 cut(s)	30, 285, 672, 827
Bst4CI	ACNGT	2 cut(s)	395, 1145
BstAFI	CTTAAG	1 cut(s)	1079
BstC8I	GCNNGC	2 cut(s)	352, 963
BstDEI	CTNAG	4 cut(s)	294, 450, 957, 1068
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	460, 531
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	2 cut(s)	9, 798
BstMAI	GTCTC	2 cut(s)	201, 980
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 616
BstNI	CCWGG	4 cut(s)	30, 285, 672, 827
BstNSI	RCATGY	2 cut(s)	559, 965
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	4 cut(s)	28, 283, 670, 825
BstSFI	CTRYAG	1 cut(s)	900
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	1164
BstV2I	GAAGAC	2 cut(s)	452, 936
BsuRI	GGCC	2 cut(s)	461, 542
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	460, 531
BtsIMutI	CAGTG	1 cut(s)	713
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	352, 963
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	2 cut(s)	9, 798
CseI	GACGC	1 cut(s)	879
Csp6I	GTAC	3 cut(s)	261, 1018, 1141
CviAII	CATG	5 cut(s)	302, 556, 962, 1118, 1135
CviQI	GTAC	3 cut(s)	261, 1018, 1141
DdeI	CTNAG	4 cut(s)	294, 450, 957, 1068
EaeI	YGGCCR	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	980
Eco32I	GATATC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	249, 585
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	4 cut(s)	28, 283, 670, 825
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	5 cut(s)	305, 559, 965, 1121, 1138
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	5 cut(s)	301, 555, 961, 1117, 1134
Fnu4HI	GCNGC	2 cut(s)	10, 1153
FokI	GGATG	2 cut(s)	467, 538
Fsp4HI	GCNGC	2 cut(s)	10, 1153
FspBI	CTAG	5 cut(s)	48, 276, 351, 441, 579
GlaI	GCGC	2 cut(s)	8, 797
GluI	GCNGC	2 cut(s)	10, 1153
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	2 cut(s)	461, 542
HgaI	GACGC	1 cut(s)	879
HhaI	GCGC	2 cut(s)	9, 798
Hin1II	CATG	5 cut(s)	305, 559, 965, 1121, 1138
Hin6I	GCGC	2 cut(s)	7, 796
HinP1I	GCGC	2 cut(s)	7, 796
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	298, 1010
HphI	GGTGA	3 cut(s)	389, 785, 1133
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	8 cut(s)	268, 390, 505, 533, 605, 629, 708, 1041
Hpy188III	TCNNGA	2 cut(s)	176, 1135
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	7 cut(s)	109, 187, 211, 760, 764, 856, 1036
HpyCH4III	ACNGT	2 cut(s)	395, 1145
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	9 cut(s)	308, 619, 635, 656, 664, 902, 965, 1117, 1152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 616
HpyF3I	CTNAG	4 cut(s)	294, 450, 957, 1068
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	305, 559, 965, 1121, 1138
HspAI	GCGC	2 cut(s)	7, 796
Lsp1109I	GCAGC	1 cut(s)	1164
LweI	GCATC	2 cut(s)	337, 1054
MaeI	CTAG	5 cut(s)	48, 276, 351, 441, 579
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	365, 395
MboII	GAAGA	9 cut(s)	457, 502, 829, 868, 871, 892, 895, 931, 941
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	2 cut(s)	279, 468
MluNI	TGGCCA	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	4 cut(s)	246, 570, 696, 1080
MslI	CAYNNNNRTG	2 cut(s)	327, 402
Msp20I	TGGCCA	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	1079
MspR9I	CCNGG	4 cut(s)	30, 285, 672, 827
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	4 cut(s)	30, 285, 672, 827
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	379, 616
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	305, 559, 965, 1121, 1138
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	2 cut(s)	559, 965
OliI	CACNNNNGTG	1 cut(s)	402
PaeI	GCATGC	1 cut(s)	965
PagI	TCATGA	1 cut(s)	1134
PaqCI	CACCTGC	1 cut(s)	408
PasI	CCCWGGG	1 cut(s)	826
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	298, 1010
PkrI	GCNGC	2 cut(s)	11, 1154
Psp6I	CCWGG	4 cut(s)	28, 283, 670, 825
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	4 cut(s)	28, 283, 670, 825
PspN4I	GGNNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	904
RsaI	GTAC	3 cut(s)	262, 1019, 1142
RsaNI	GTAC	3 cut(s)	261, 1018, 1141
RseI	CAYNNNNRTG	2 cut(s)	327, 402
SaqAI	TTAA	4 cut(s)	246, 570, 696, 1080
SatI	GCNGC	2 cut(s)	10, 1153
ScrFI	CCNGG	4 cut(s)	30, 285, 672, 827
SfaNI	GCATC	2 cut(s)	337, 1054
SfcI	CTRYAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	2 cut(s)	327, 402
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
SphI	GCATGC	1 cut(s)	965
Sse9I	AATT	2 cut(s)	279, 468
SsiI	CCGC	2 cut(s)	508, 675
SspMI	CTAG	5 cut(s)	48, 276, 351, 441, 579
StyD4I	CCNGG	4 cut(s)	28, 283, 670, 825
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	395, 1145
TaiI	ACGT	1 cut(s)	69
TasI	AATT	2 cut(s)	279, 468
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	2 cut(s)	298, 1010
Tru1I	TTAA	4 cut(s)	246, 570, 696, 1080
Tru9I	TTAA	4 cut(s)	246, 570, 696, 1080
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	9, 1152
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	311, 1123
TspRI	CASTG	1 cut(s)	720
Vha464I	CTTAAG	1 cut(s)	1079
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	2 cut(s)	559, 965
XspI	CTAG	5 cut(s)	48, 276, 351, 441, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.