Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Forward (+)

34957900 .. 34965541

Gene Structure 7642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTCAGATTGGTGGCCAAGGGAACTGGCATGTTGGCTGAAGTTAAGGAAACTAGCAAGGACAAGAGAGCTGATATCCGAAAGCCTGATGTGCAAGAAGTCAGAGTTGCAACACGGGTTAGTGGAAGTGCAATGGTGCAGAACCCTGGCGGAATGGTTCAACCCAAAGTTAAAGGATTTCCGAAACCACTGGAGAGCAATGTTGAAAGAAAGACTGATGGAAAAGAAAAGACCAAAGAGAAGGAAGGTGATGATAAACGAGGAGAAAAGCGCAAGGATAAAGATAGAGAGAAGAAAACCCAGGGGAGAGATAAGGATAGAGATAAAGAGAAGAAGAAGGAGGAGAAAGCAAAGAAGAAGAATGCGTCAAAGACTGCAGAGCCAGATAAAGAGAAGAAAAAGGAAGACAAAGCAAATGAGAAAAATGGTTCTAAGCATGCAGAACCAGACAAATCTAAAGAGACCAATAAAGAGGTTTGTATTGATTCCCAGTACAGAAAACCCTCCCAACTTCCGAAGGACAACTACAAATCTGCTGATGCTGAGGCGAACCTTAAGAAACGAAAGGACTTGACGACAAATGGAGTTTTGCATGCCAATGAAATTAGGCCCAATAAATTGCTGAGACCCTCTTCTTCCTCTCATCCATTGACTGAAAATGGAAGGACACTGGAGCCTTGCCAAACGTCCATCCCATATGTTTCAGATAAGCAGGGAGGAGCCAATAGTGTTAAAGTGGAGAGTAAGGAACGTAAGAAGAATGGCATTATTGAAGCTAGATCGTCATCTGTCTCCCCTGCAAAGCCTACTTCTATAGCTGCACAAGCTGATCCATTTGCTGAAGCATCTATGAGACCGCCCCATCCAGATTCCAGATATCTAAGTGAGGTTTATATGGTTCCAAAAATGGACAAATTGTCTGATGACGATCAAGACTGGTTGTTTGGTTGCAGTGATACCAAATCAAAGAAGCCTAAGATGGAATCTTCACCGGATGAAGAGACGGCAGAAGTGTGGTCAGAAGCTCTGCGGATAGAGTCAGCTGATGTTTGTGCTTTGCCATATGTCATTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

40.18

Weight (kDa)

9.32

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	150, 857, 1030
AclWI	GGATC	1 cut(s)	824
AcoI	YGGCCR	1 cut(s)	15
AcuI	CTGAAG	2 cut(s)	60, 861
AfaI	GTAC	1 cut(s)	494
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	161, 206, 773
AhdI	GACNNNNNGTC	1 cut(s)	916
AjnI	CCWGG	2 cut(s)	145, 300
AluBI	AGCT	6 cut(s)	71, 776, 818, 827, 1025, 1043
AluI	AGCT	6 cut(s)	71, 776, 818, 827, 1025, 1043
Alw26I	GTCTC	5 cut(s)	455, 619, 796, 847, 995
AlwI	GGATC	1 cut(s)	824
AoxI	GGCC	2 cut(s)	15, 608
ApeKI	GCWGC	1 cut(s)	818
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	260, 981
BalI	TGGCCA	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
BbsI	GAAGAC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	4 cut(s)	212, 698, 870, 973
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	2 cut(s)	147, 302
BcoDI	GTCTC	5 cut(s)	455, 619, 796, 847, 995
BfaI	CTAG	2 cut(s)	54, 777
BfmI	CTRYAG	2 cut(s)	375, 813
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	1 cut(s)	819
BlsI	GCNGC	1 cut(s)	820
Bme1390I	CCNGG	2 cut(s)	147, 302
BmeRI	GACNNNNNGTC	1 cut(s)	916
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	3 cut(s)	675, 721, 900
BmrFI	CCNGG	2 cut(s)	147, 302
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	529, 854
BmuI	ACTGGG	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	212, 692
Bpu10I	CCTNAGC	1 cut(s)	543
BsaBI	GATNNNNATC	2 cut(s)	784, 927
BsaI	GGTCTC	3 cut(s)	455, 619, 847
BsaJI	CCNNGG	4 cut(s)	18, 145, 300, 301
BsaWI	WCCGGW	1 cut(s)	991
Bse1I	ACTGG	5 cut(s)	31, 195, 490, 675, 941
Bse3DI	GCAATG	2 cut(s)	138, 205
Bse8I	GATNNNNATC	2 cut(s)	784, 927
BseBI	CCWGG	2 cut(s)	147, 302
BseDI	CCNNGG	4 cut(s)	18, 145, 300, 301
BseGI	GGATG	4 cut(s)	643, 690, 862, 1000
BseJI	GATNNNNATC	2 cut(s)	784, 927
BseMI	GCAATG	2 cut(s)	138, 205
BseMII	CTCAG	2 cut(s)	534, 614
BseNI	ACTGG	5 cut(s)	31, 195, 490, 675, 941
BseRI	GAGGAG	3 cut(s)	276, 356, 732
BseXI	GCAGC	1 cut(s)	805
BsgI	GTGCAG	2 cut(s)	158, 804
BshFI	GGCC	2 cut(s)	17, 610
BsiSI	CCGG	1 cut(s)	992
BsmAI	GTCTC	5 cut(s)	455, 619, 796, 847, 995
BsmBI	CGTCTC	1 cut(s)	995
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	17, 610
Bso31I	GGTCTC	3 cut(s)	455, 619, 847
Bsp143I	GATC	3 cut(s)	779, 829, 928
BspACI	CCGC	3 cut(s)	150, 857, 1030
BspANI	GGCC	2 cut(s)	17, 610
BspCNI	CTCAG	2 cut(s)	535, 615
BspLI	GGNNCC	3 cut(s)	675, 721, 900
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	824
BspTI	CTTAAG	1 cut(s)	554
BspTNI	GGTCTC	3 cut(s)	455, 619, 847
BsrDI	GCAATG	2 cut(s)	138, 205
BsrI	ACTGG	5 cut(s)	31, 195, 490, 675, 941
BssECI	CCNNGG	4 cut(s)	18, 145, 300, 301
BssMI	GATC	3 cut(s)	779, 829, 928
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	147, 302
Bst6I	CTCTTC	2 cut(s)	637, 993
BstAFI	CTTAAG	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	438, 594
BstDEI	CTNAG	5 cut(s)	432, 543, 623, 881, 975
BstF5I	GGATG	4 cut(s)	643, 690, 862, 1000
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	3 cut(s)	782, 832, 931
BstMAI	GTCTC	5 cut(s)	455, 619, 796, 847, 995
BstMBI	GATC	3 cut(s)	779, 829, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 824
BstNI	CCWGG	2 cut(s)	147, 302
BstNSI	RCATGY	3 cut(s)	34, 440, 596
BstSCI	CCNGG	2 cut(s)	145, 300
BstSFI	CTRYAG	2 cut(s)	375, 813
BstV1I	GCAGC	1 cut(s)	805
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	17, 610
BtsCI	GGATG	4 cut(s)	643, 690, 862, 1000
BtsI	GCAGTG	1 cut(s)	958
BtsIMutI	CAGTG	3 cut(s)	188, 668, 958
Cac8I	GCNNGC	2 cut(s)	438, 594
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	609
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	31, 437, 593
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	432, 543, 623, 881, 975
DpnI	GATC	3 cut(s)	781, 831, 930
DpnII	GATC	3 cut(s)	779, 829, 928
DriI	GACNNNNNGTC	1 cut(s)	916
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	637, 993
Eam1105I	GACNNNNNGTC	1 cut(s)	916
EarI	CTCTTC	2 cut(s)	637, 993
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	3 cut(s)	455, 619, 847
Eco32I	GATATC	2 cut(s)	76, 878
Eco57I	CTGAAG	2 cut(s)	60, 861
EcoRII	CCWGG	2 cut(s)	145, 300
EcoRV	GATATC	2 cut(s)	76, 878
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	995
FaeI	CATG	3 cut(s)	34, 440, 596
FatI	CATG	3 cut(s)	30, 436, 592
FauNDI	CATATG	2 cut(s)	697, 1063
Fnu4HI	GCNGC	1 cut(s)	819
FokI	GGATG	4 cut(s)	630, 677, 849, 1007
Fsp4HI	GCNGC	1 cut(s)	819
FspBI	CTAG	2 cut(s)	54, 777
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	819
GsuI	CTGGAG	2 cut(s)	212, 692
HaeIII	GGCC	2 cut(s)	17, 610
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	34, 440, 596
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	485, 869, 983, 1037
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	2 cut(s)	260, 981
Hpy188I	TCNGA	8 cut(s)	8, 80, 104, 183, 516, 706, 922, 1021
Hpy188III	TCNNGA	3 cut(s)	866, 873, 932
HpyAV	CCTTC	5 cut(s)	235, 239, 331, 511, 657
HpyCH4IV	ACGT	2 cut(s)	686, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 824
HpyF3I	CTNAG	5 cut(s)	432, 543, 623, 881, 975
HpySE526I	ACGT	2 cut(s)	686, 751
Hsp92II	CATG	3 cut(s)	34, 440, 596
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	779, 829, 928
LmnI	GCTCC	2 cut(s)	673, 719
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	2 cut(s)	529, 854
MaeI	CTAG	2 cut(s)	54, 777
MaeII	ACGT	2 cut(s)	686, 751
MalI	GATC	3 cut(s)	781, 831, 930
MboI	GATC	3 cut(s)	779, 829, 928
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	603, 617, 914
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	1046
MnlI	CCTC	9 cut(s)	254, 334, 466, 514, 538, 640, 649, 710, 880
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	4 cut(s)	45, 171, 555, 732
MslI	CAYNNNNRTG	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	1043
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	2 cut(s)	147, 302
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	147, 302
MwoI	GCNNNNNNNGC	2 cut(s)	91, 824
NdeI	CATATG	2 cut(s)	697, 1063
NdeII	GATC	3 cut(s)	779, 829, 928
NlaIII	CATG	3 cut(s)	34, 440, 596
NlaIV	GGNNCC	3 cut(s)	675, 721, 900
NspI	RCATGY	3 cut(s)	34, 440, 596
PaeI	GCATGC	2 cut(s)	440, 596
PasI	CCCWGGG	1 cut(s)	301
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	485, 869, 983
PkrI	GCNGC	1 cut(s)	820
PleI	GAGTC	1 cut(s)	1045
PpsI	GAGTC	1 cut(s)	1045
Psp6I	CCWGG	2 cut(s)	145, 300
PspGI	CCWGG	2 cut(s)	145, 300
PspN4I	GGNNCC	3 cut(s)	675, 721, 900
PspPI	GGNCC	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	4 cut(s)	45, 171, 555, 732
SatI	GCNGC	1 cut(s)	819
Sau3AI	GATC	3 cut(s)	779, 829, 928
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	1 cut(s)	1046
ScrFI	CCNGG	2 cut(s)	147, 302
SfaNI	GCATC	2 cut(s)	529, 854
SfcI	CTRYAG	2 cut(s)	375, 813
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SphI	GCATGC	2 cut(s)	440, 596
Sse9I	AATT	3 cut(s)	603, 617, 914
SsiI	CCGC	3 cut(s)	150, 857, 1030
SspMI	CTAG	2 cut(s)	54, 777
StyD4I	CCNGG	2 cut(s)	145, 300
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	2 cut(s)	689, 754
TasI	AATT	3 cut(s)	603, 617, 914
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	485, 869, 983
Tru1I	TTAA	4 cut(s)	45, 171, 555, 732
Tru9I	TTAA	4 cut(s)	45, 171, 555, 732
TscAI	CASTG	3 cut(s)	195, 675, 958
TseI	GCWGC	1 cut(s)	818
TspDTI	ATGAA	2 cut(s)	615, 1011
TspRI	CASTG	3 cut(s)	195, 675, 958
Vha464I	CTTAAG	1 cut(s)	554
XceI	RCATGY	3 cut(s)	34, 440, 596
XspI	CTAG	2 cut(s)	54, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.