Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1175390 .. 1179780

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGTCGCGCTGCTTTCCATTTCCTCCACCTGGATATGAAAAAAAGACTAGGACAGATGATGTGGACTTGCTGAAAAAGGAGAAGCACAGAGAAAAGAAGCATAAAAAGGAAAAGAAGGACAAAGAGAAGAGGGAGAGTAAAGATAAAAGTGAAGGAAAGCATCGGGAAAAGAAAGACAAGAAGGAAAAAAAGAGAGACAAAAAGAAGGATAAGGAGAAAGATAGGGACCCGGTTAAGGACAAAACAAGTACTGCAGACGAGAAGAGAGTTCCAGGAAAGACCGAGGGTCATGGTGAAGAGAGATACATTCAGAAAGAGTACAAGGGCAACTGTTTTGACAAGAGATCTGCAGGGCAAATTGGATGTCATCAGGCAGAGAAACTCAGTCAATACTGTCATCTGGCTGAGCAAAACCAGAATTCTGTATTGGTGGAGTTGGGTAGGAGTAAAGATGAGGCCAGGGCAATCGGTAACCATCTGGTTGGGAAGATTACTGAATCAGACCGAAAGAAGGATGAGGGGATGGTCAGATTGCTGGCCGAGGGTACTGACATTTTGGCTGAAGTTAAGGAAAAGAACAAGGACAGGAGAGTTGATGACAGAAGGACAGATGGGCAAGAAGTCAGGGGTGCAGCACAGATTAGTGGGAACACGATGGTTCAGAACCTTATTGGTGTGGTTGAACCTAAAGTTGAAGGACTTTCCAGACCATTGGCAAGCAACATGGATAGAGACATTGATGGAAAAGAAAAGGCCAAAGAGAAGGAAGGTGACGATAAACGAGGAGAAAAACGCAAGGAAAAAGATAGAGAGAAGAAAAAACAAGGGAGAGACAAGGACAAAGATAAAGAGAAGAAAAAGGAAGCGAAAGCAAAGGAGAAAAATGAATCTAAGAATGCAGAGCCAGACAAAGAGAAGAAAAAGGAAGAGAAAGCAAAAGAGAAAAATGAAACTAAGAATGCTGAGCCTGATAAATTAAGAAAGAGCGATAAAGAGGATCACATAGATTCCCGTAGTGTCAAAACCTCCCAACTTTCTAAGGACAGCAACAAAAGTGCTGGTGCTGATGGAAATCTGAAGAAAAGAAGGGACATACAGATGAATGGAGTTGTGCATGCCAATGATATTAGGCCCAGTAAACTGTCGAGACCCTCCTCTTCCTCTCATTCATTGCCTGTAAATGGGAGAACACTGGAATCTTGCCAAACTTCCATCCCTTCCATCCCATATGTTTCAGATAGGCTGGGTGCTGCAAATAACGTTAAGGTGGACGTTAAGGACAGCAAGATAAATGGCATTGTTGAAGCTCCGTCATTGACTGTCTCCACTGCAAAGCCGACATCTACAGCTACACAGGTTGTTCCTGTTGCTGAAGCATGCATGAGACCACCCCATCCGGATTCCAGATATCTAAGCCATGTTTATTTGGTTCCAAAGTTGGACGAAGTGCCTGATCGATCTCCTAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

491

Amino Acids

55.46

Weight (kDa)

9.48

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	1396
AclI	AACGTT	1 cut(s)	1260
AclWI	GGATC	1 cut(s)	1005
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	3 cut(s)	582, 1097, 1392
AfaI	GTAC	3 cut(s)	250, 320, 547
AfiI	CCNNNNNNNGG	4 cut(s)	29, 235, 511, 1181
AgsI	TTSAA	3 cut(s)	683, 695, 1304
AhdI	GACNNNNNGTC	1 cut(s)	285
AjnI	CCWGG	3 cut(s)	28, 271, 458
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	1307, 1349
AluI	AGCT	2 cut(s)	1307, 1349
Alw26I	GTCTC	6 cut(s)	189, 726, 825, 1141, 1327, 1378
AlwI	GGATC	1 cut(s)	1005
Aor13HI	TCCGGA	1 cut(s)	1396
AoxI	GGCC	4 cut(s)	456, 537, 753, 1130
ApeKI	GCWGC	3 cut(s)	9, 632, 1250
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	226, 1131
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	305, 782
AvaII	GGWCC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	644, 1237
BccI	CCATC	9 cut(s)	483, 517, 605, 649, 734, 1061, 1220, 1229, 1401
BciT130I	CCWGG	3 cut(s)	30, 273, 460
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	6 cut(s)	189, 726, 825, 1141, 1327, 1378
BfaI	CTAG	2 cut(s)	48, 1464
BfmI	CTRYAG	3 cut(s)	252, 348, 1344
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	3 cut(s)	10, 633, 1251
BlpI	GCTNAGC	2 cut(s)	405, 963
BlsI	GCNGC	3 cut(s)	11, 634, 1252
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	4 cut(s)	30, 230, 273, 460
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	226, 1131
BmiI	GGNNCC	3 cut(s)	227, 228, 1431
BmrFI	CCNGG	4 cut(s)	30, 230, 273, 460
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	1128
Bpu1102I	GCTNAGC	2 cut(s)	405, 963
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	1456
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaI	GGTCTC	2 cut(s)	1141, 1378
BsaJI	CCNNGG	3 cut(s)	282, 459, 540
BsaWI	WCCGGW	1 cut(s)	1396
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 235, 511, 1181
Bse1I	ACTGG	2 cut(s)	1134, 1197
Bse3DI	GCAATG	1 cut(s)	1169
Bse8I	GATNNNNATC	1 cut(s)	1071
BseAI	TCCGGA	1 cut(s)	1396
BseBI	CCWGG	3 cut(s)	30, 273, 460
BseCI	ATCGAT	1 cut(s)	1456
BseDI	CCNNGG	3 cut(s)	282, 459, 540
BseGI	GGATG	6 cut(s)	368, 520, 528, 1212, 1221, 1393
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	4 cut(s)	29, 235, 511, 1181
BseMI	GCAATG	1 cut(s)	1169
BseMII	CTCAG	3 cut(s)	396, 397, 954
BseNI	ACTGG	2 cut(s)	1134, 1197
BseRI	GAGGAG	2 cut(s)	798, 1144
BseXI	GCAGC	2 cut(s)	644, 1237
BseYI	CCCAGC	1 cut(s)	1243
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	458, 539, 755, 1132
BshVI	ATCGAT	1 cut(s)	1456
BsiSI	CCGG	2 cut(s)	230, 1397
BslFI	GGGAC	2 cut(s)	239, 1103
BslI	CCNNNNNNNGG	4 cut(s)	29, 235, 511, 1181
BsmAI	GTCTC	6 cut(s)	189, 726, 825, 1141, 1327, 1378
BsmFI	GGGAC	2 cut(s)	239, 1103
BsmI	GAATGC	2 cut(s)	901, 964
BsnI	GGCC	4 cut(s)	458, 539, 755, 1132
Bso31I	GGTCTC	2 cut(s)	1141, 1378
Bsp13I	TCCGGA	1 cut(s)	1396
Bsp143I	GATC	4 cut(s)	344, 997, 1453, 1457
Bsp1720I	GCTNAGC	2 cut(s)	405, 963
BspANI	GGCC	4 cut(s)	458, 539, 755, 1132
BspCNI	CTCAG	3 cut(s)	396, 397, 955
BspDI	ATCGAT	1 cut(s)	1456
BspEI	TCCGGA	1 cut(s)	1396
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	227, 228, 1431
BspMAI	CTGCAG	2 cut(s)	256, 352
BspPI	GGATC	1 cut(s)	1005
BspTNI	GGTCTC	2 cut(s)	1141, 1378
BsrDI	GCAATG	1 cut(s)	1169
BsrI	ACTGG	2 cut(s)	1134, 1197
BssECI	CCNNGG	3 cut(s)	282, 459, 540
BssMI	GATC	4 cut(s)	344, 997, 1453, 1457
Bst2UI	CCWGG	3 cut(s)	30, 273, 460
Bst4CI	ACNGT	4 cut(s)	332, 395, 1143, 1321
Bst6I	CTCTTC	5 cut(s)	122, 257, 291, 921, 1162
BstC8I	GCNNGC	4 cut(s)	537, 718, 1116, 1378
BstDEI	CTNAG	7 cut(s)	383, 405, 891, 954, 963, 1038, 1412
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	6 cut(s)	368, 520, 528, 1212, 1221, 1393
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	4 cut(s)	347, 1000, 1456, 1460
BstMAI	GTCTC	6 cut(s)	189, 726, 825, 1141, 1327, 1378
BstMBI	GATC	4 cut(s)	344, 997, 1453, 1457
BstNI	CCWGG	3 cut(s)	30, 273, 460
BstNSI	RCATGY	2 cut(s)	1118, 1380
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	4 cut(s)	28, 228, 271, 458
BstSFI	CTRYAG	3 cut(s)	252, 348, 1344
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	644, 1237
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	2 cut(s)	482, 712
BstYI	RGATCY	1 cut(s)	344
Bsu15I	ATCGAT	1 cut(s)	1456
BsuRI	GGCC	4 cut(s)	458, 539, 755, 1132
BsuTUI	ATCGAT	1 cut(s)	1456
BtsCI	GGATG	6 cut(s)	368, 520, 528, 1212, 1221, 1393
BtsI	GCAGTG	1 cut(s)	1326
BtsIMutI	CAGTG	2 cut(s)	1190, 1326
Cac8I	GCNNGC	4 cut(s)	537, 718, 1116, 1378
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	226, 1131
ClaI	ATCGAT	1 cut(s)	1456
Csp6I	GTAC	3 cut(s)	249, 319, 546
CviAII	CATG	6 cut(s)	290, 724, 1115, 1377, 1381, 1418
CviQI	GTAC	3 cut(s)	249, 319, 546
DdeI	CTNAG	7 cut(s)	383, 405, 891, 954, 963, 1038, 1412
DpnI	GATC	4 cut(s)	346, 999, 1455, 1459
DpnII	GATC	4 cut(s)	344, 997, 1453, 1457
DriI	GACNNNNNGTC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	5 cut(s)	122, 257, 291, 921, 1162
Eam1105I	GACNNNNNGTC	1 cut(s)	285
EarI	CTCTTC	5 cut(s)	122, 257, 291, 921, 1162
Eco31I	GGTCTC	2 cut(s)	1141, 1378
Eco32I	GATATC	1 cut(s)	1409
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	3 cut(s)	582, 1097, 1392
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	28, 271, 458
EcoRV	GATATC	1 cut(s)	1409
EcoT22I	ATGCAT	1 cut(s)	1382
FaeI	CATG	6 cut(s)	293, 727, 1118, 1380, 1384, 1421
FaqI	GGGAC	2 cut(s)	239, 1103
FatI	CATG	6 cut(s)	289, 723, 1114, 1376, 1380, 1417
FauNDI	CATATG	1 cut(s)	1228
Fnu4HI	GCNGC	3 cut(s)	10, 633, 1251
FokI	GGATG	6 cut(s)	375, 527, 535, 1199, 1208, 1380
Fsp4HI	GCNGC	3 cut(s)	10, 633, 1251
FspBI	CTAG	2 cut(s)	48, 1464
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	10, 633, 1251
GsaI	CCCAGC	1 cut(s)	1247
HaeIII	GGCC	4 cut(s)	458, 539, 755, 1132
HapII	CCGG	2 cut(s)	230, 1397
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	6 cut(s)	293, 727, 1118, 1380, 1384, 1421
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	5 cut(s)	497, 887, 1007, 1196, 1400
HpaII	CCGG	2 cut(s)	230, 1397
HphI	GGTGA	2 cut(s)	305, 782
Hpy166II	GTNNAC	3 cut(s)	64, 1139, 1270
Hpy188I	TCNGA	6 cut(s)	312, 502, 530, 663, 1077, 1237
Hpy188III	TCNNGA	5 cut(s)	164, 705, 1146, 1397, 1404
Hpy8I	GTNNAC	3 cut(s)	64, 1139, 1270
HpyCH4III	ACNGT	4 cut(s)	332, 395, 1143, 1321
HpyCH4IV	ACGT	2 cut(s)	1260, 1272
HpyCH4V	TGCA	8 cut(s)	254, 350, 632, 899, 1114, 1253, 1331, 1380
HpyF3I	CTNAG	7 cut(s)	383, 405, 891, 954, 963, 1038, 1412
HpySE526I	ACGT	2 cut(s)	1260, 1272
Hsp92II	CATG	6 cut(s)	293, 727, 1118, 1380, 1384, 1421
HspAI	GCGC	1 cut(s)	7
KflI	GGGWCCC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	1396
Kzo9I	GATC	4 cut(s)	344, 997, 1453, 1457
LmnI	GCTCC	1 cut(s)	1312
Lsp1109I	GCAGC	2 cut(s)	644, 1237
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	48, 1464
MaeII	ACGT	2 cut(s)	1260, 1272
MaeIII	GTNAC	2 cut(s)	470, 770
MalI	GATC	4 cut(s)	346, 999, 1455, 1459
MboI	GATC	4 cut(s)	344, 997, 1453, 1457
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	3 cut(s)	357, 418, 974
MmeI	TCCRAC	1 cut(s)	1419
Mph1103I	ATGCAT	1 cut(s)	1382
MroI	TCCGGA	1 cut(s)	1396
MseI	TTAA	5 cut(s)	234, 567, 977, 1263, 1275
MslI	CAYNNNNRTG	2 cut(s)	1097, 1119
MspI	CCGG	2 cut(s)	230, 1397
MspR9I	CCNGG	4 cut(s)	30, 230, 273, 460
Mva1269I	GAATGC	2 cut(s)	901, 964
MvaI	CCWGG	3 cut(s)	30, 273, 460
MvnI	CGCG	1 cut(s)	7
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	1228
NdeII	GATC	4 cut(s)	344, 997, 1453, 1457
NlaIII	CATG	6 cut(s)	293, 727, 1118, 1380, 1384, 1421
NlaIV	GGNNCC	3 cut(s)	227, 228, 1431
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	770
NsiI	ATGCAT	1 cut(s)	1382
NspI	RCATGY	2 cut(s)	1118, 1380
PaeI	GCATGC	2 cut(s)	1118, 1380
PctI	GAATGC	2 cut(s)	901, 964
PfeI	GAWTC	5 cut(s)	497, 887, 1007, 1196, 1400
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	11, 634, 1252
PpuMI	RGGWCCY	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	1260
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	28, 271, 458
PspEI	GGTNACC	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	1243
PspGI	CCWGG	3 cut(s)	28, 271, 458
PspN4I	GGNNCC	3 cut(s)	227, 228, 1431
PspPI	GGNCC	2 cut(s)	226, 1131
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	2 cut(s)	256, 352
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	3 cut(s)	250, 320, 547
RsaNI	GTAC	3 cut(s)	249, 319, 546
RseI	CAYNNNNRTG	2 cut(s)	1097, 1119
SaqAI	TTAA	5 cut(s)	234, 567, 977, 1263, 1275
SatI	GCNGC	3 cut(s)	10, 633, 1251
Sau3AI	GATC	4 cut(s)	344, 997, 1453, 1457
Sau96I	GGNCC	2 cut(s)	226, 1131
ScaI	AGTACT	1 cut(s)	250
ScrFI	CCNGG	4 cut(s)	30, 230, 273, 460
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	3 cut(s)	252, 348, 1344
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	1097, 1119
SphI	GCATGC	2 cut(s)	1118, 1380
Sse9I	AATT	3 cut(s)	357, 418, 974
SspMI	CTAG	2 cut(s)	48, 1464
StyD4I	CCNGG	4 cut(s)	28, 228, 271, 458
TaaI	ACNGT	4 cut(s)	332, 395, 1143, 1321
TaiI	ACGT	2 cut(s)	1263, 1275
TaqI	TCGA	2 cut(s)	1145, 1456
TaqII	GACCGA	2 cut(s)	296, 519
TasI	AATT	3 cut(s)	357, 418, 974
TatI	WGTACW	2 cut(s)	248, 318
TfiI	GAWTC	5 cut(s)	497, 887, 1007, 1196, 1400
Tru1I	TTAA	5 cut(s)	234, 567, 977, 1263, 1275
Tru9I	TTAA	5 cut(s)	234, 567, 977, 1263, 1275
TscAI	CASTG	2 cut(s)	1197, 1333
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	3 cut(s)	9, 632, 1250
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	5 cut(s)	51, 900, 963, 1115, 1158
TspGWI	ACGGA	1 cut(s)	1299
TspRI	CASTG	2 cut(s)	1197, 1333
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	2 cut(s)	1118, 1380
XspI	CTAG	2 cut(s)	48, 1464
ZrmI	AGTACT	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.