Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004133.1

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Reverse (-)

96110 .. 102185

Gene Structure 6076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004133.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

atgtcgcgctgctttccatttccaccaccaggatatgagaaaaaagctaggacagatgatgtggacgtgctgaaaaaggagaagcagagagaaaagaagcataaaaaggataagaaggacaaagaaaaaagagaaaaagagaaaagtgagaaagatagaagtgatggaaaacatcgggaaaagaaagacaagaaggaaaagaacagagacaaaaagaaggacaaggaaaaagactcagacaaagttaaagataaacttggtacttcagatggaactagaattccaggtaaaactgagaatcatgttgcagagaaactcgttcataaagatgacagagacaagagagatgctagccaagttggaggttaccagccagaaaagcttggtcagaacagtcacctgcctgcagagaacaggaactctgtatcagtggaggtggctaggaagactaaggatgaggccagaggaattgggaaccagttggttgagaagattagtggttcagaccgcaaaaaagatgaggggatggtcagattggtggccaagggaactggcatgttggctgaagttaaggaaactagcaaggacaagagagctgatatccgaaagcctgatgtgcaagaagtcagagttgcaacacgggttagtggaagtgcaatggtgcagaaccctggcggaatggttcaacccaaagttaaaggatttccgaaaccactggagagcaatgttgaaagaaagactgatggaaaagaaaagaccaaagagaaggaaggtgatgataaacgaggggaaaagcgcaaggataaagatagagagaagaaaacccaggggagagataaggatagagataaagagaagaagaaggaggagaaagcaaagaagaagaatgcgtcaaagactgcagagccagataaagagaagaaaaaggaagacaaagcaaatgagaaaaatggttctaagcatgcagaaccagacaaatctaaggagaccaataaagaggtttgtattgattcccagtacagaaaaccctcccaactttcgaaggacaactacaaatctgctgatgctgaggcgaaccttaagaaacgaaaggacttgacgacaaatggagttttgcatgccaatgaaattaggcccaataaattgctgagaccctcttcttcctctcatccattgactgaaaatggaaggacactggagccttgccaaacgtccatcccatatgtttcagataagcagggaggagccaatagtgttaaagtggagagtaaggaacgtaagaagaatggcattattgaaactagatcgtcatctgtttccccagcaaagcctacttctatagctgcacaagctgatccattagctgaagcatctatgagaccgccccatccagattccagatatctaagtgaggtttatatggttccaaaaatggacaaattgtctgatgacgatcaagactggttgtttggttgcagtgataccaaatcaaagaagcctaagatggaatcttcaccggatgaggagacggcagaagtgtggtcagaagctctgcggatagagtcagctgatgtttgtgctttgccatatgtcattccatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

534

Amino Acids

60.35

Weight (kDa)

9.49

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	408
AccII	CGCG	1 cut(s)	7
AciI	CCGC	4 cut(s)	508, 675, 1382, 1555
AclWI	GGATC	1 cut(s)	1349
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	3 cut(s)	249, 585, 1386
AfaI	GTAC	2 cut(s)	262, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	3 cut(s)	686, 731, 1298
AhdI	GACNNNNNGTC	1 cut(s)	1441
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	4 cut(s)	28, 283, 670, 825
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	8 cut(s)	47, 382, 596, 1343, 1352, 1364, 1550, 1568
AluI	AGCT	8 cut(s)	47, 382, 596, 1343, 1352, 1364, 1550, 1568
Alw26I	GTCTC	6 cut(s)	201, 330, 980, 1144, 1372, 1520
AlwI	GGATC	1 cut(s)	1349
AoxI	GGCC	3 cut(s)	459, 540, 1133
ApeKI	GCWGC	2 cut(s)	9, 1343
ApoI	RAATTY	1 cut(s)	279
ArsI	GACNNNNNNTTYG	2 cut(s)	1451, 1483
AspLEI	GCGC	2 cut(s)	9, 798
AspS9I	GGNCC	1 cut(s)	1134
AsuHPI	GGTGA	3 cut(s)	389, 785, 1506
AsuII	TTCGAA	1 cut(s)	1040
AsuNHI	GCTAGC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	1034, 1066
BbsI	GAAGAC	2 cut(s)	452, 936
BbvCI	CCTCAGC	1 cut(s)	1068
BbvI	GCAGC	1 cut(s)	1330
BccI	CCATC	7 cut(s)	158, 263, 520, 737, 1223, 1395, 1498
BceAI	ACGGC	1 cut(s)	1545
BciT130I	CCWGG	4 cut(s)	30, 285, 672, 827
BcoDI	GTCTC	6 cut(s)	201, 330, 980, 1144, 1372, 1520
BfaI	CTAG	6 cut(s)	48, 276, 351, 441, 579, 1302
BfmI	CTRYAG	3 cut(s)	405, 900, 1338
BfrI	CTTAAG	1 cut(s)	1079
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	10, 1344
BlsI	GCNGC	2 cut(s)	11, 1345
Bme1390I	CCNGG	4 cut(s)	30, 285, 672, 827
BmeRI	GACNNNNNGTC	1 cut(s)	1441
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	1134
BmiI	GGNNCC	4 cut(s)	476, 1200, 1246, 1425
BmrFI	CCNGG	4 cut(s)	30, 285, 672, 827
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	3 cut(s)	337, 1054, 1379
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	1009
BpiI	GAAGAC	2 cut(s)	452, 936
BpmI	CTGGAG	2 cut(s)	737, 1217
Bpu10I	CCTNAGC	1 cut(s)	1068
Bpu14I	TTCGAA	1 cut(s)	1040
BsaBI	GATNNNNATC	2 cut(s)	1309, 1452
BsaI	GGTCTC	3 cut(s)	980, 1144, 1372
BsaJI	CCNNGG	4 cut(s)	543, 670, 825, 826
BsaWI	WCCGGW	1 cut(s)	1516
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	6 cut(s)	478, 556, 720, 1015, 1200, 1466
Bse3DI	GCAATG	2 cut(s)	663, 730
Bse8I	GATNNNNATC	2 cut(s)	1309, 1452
BseBI	CCWGG	4 cut(s)	30, 285, 672, 827
BseDI	CCNNGG	4 cut(s)	543, 670, 825, 826
BseGI	GGATG	6 cut(s)	460, 531, 1168, 1215, 1387, 1525
BseJI	GATNNNNATC	2 cut(s)	1309, 1452
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	2 cut(s)	663, 730
BseMII	CTCAG	4 cut(s)	249, 285, 1059, 1139
BseNI	ACTGG	6 cut(s)	478, 556, 720, 1015, 1200, 1466
BseRI	GAGGAG	3 cut(s)	881, 1257, 1538
BseXI	GCAGC	1 cut(s)	1330
BseYI	CCCAGC	1 cut(s)	1321
BsgI	GTGCAG	2 cut(s)	683, 1329
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	3 cut(s)	461, 542, 1135
BsiSI	CCGG	1 cut(s)	1517
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	6 cut(s)	201, 330, 980, 1144, 1372, 1520
BsmBI	CGTCTC	1 cut(s)	1520
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	3 cut(s)	461, 542, 1135
Bso31I	GGTCTC	3 cut(s)	980, 1144, 1372
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp143I	GATC	3 cut(s)	1304, 1354, 1453
BspACI	CCGC	4 cut(s)	508, 675, 1382, 1555
BspANI	GGCC	3 cut(s)	461, 542, 1135
BspCNI	CTCAG	4 cut(s)	248, 286, 1060, 1140
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	476, 1200, 1246, 1425
BspMAI	CTGCAG	2 cut(s)	409, 904
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	1349
BspT104I	TTCGAA	1 cut(s)	1040
BspTI	CTTAAG	1 cut(s)	1079
BspTNI	GGTCTC	3 cut(s)	980, 1144, 1372
BsrDI	GCAATG	2 cut(s)	663, 730
BsrI	ACTGG	6 cut(s)	478, 556, 720, 1015, 1200, 1466
BssECI	CCNNGG	4 cut(s)	543, 670, 825, 826
BssMI	GATC	3 cut(s)	1304, 1354, 1453
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	4 cut(s)	30, 285, 672, 827
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	1162
BstAFI	CTTAAG	1 cut(s)	1079
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	4 cut(s)	352, 405, 963, 1119
BstDEI	CTNAG	9 cut(s)	235, 294, 450, 957, 981, 1068, 1148, 1406, 1500
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	6 cut(s)	460, 531, 1168, 1215, 1387, 1525
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	2 cut(s)	9, 798
BstKTI	GATC	3 cut(s)	1307, 1357, 1456
BstMAI	GTCTC	6 cut(s)	201, 330, 980, 1144, 1372, 1520
BstMBI	GATC	3 cut(s)	1304, 1354, 1453
BstMWI	GCNNNNNNNGC	3 cut(s)	379, 616, 1349
BstNI	CCWGG	4 cut(s)	30, 285, 672, 827
BstNSI	RCATGY	3 cut(s)	559, 965, 1121
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	4 cut(s)	28, 283, 670, 825
BstSFI	CTRYAG	3 cut(s)	405, 900, 1338
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	1330
BstV2I	GAAGAC	2 cut(s)	452, 936
BsuRI	GGCC	3 cut(s)	461, 542, 1135
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	6 cut(s)	460, 531, 1168, 1215, 1387, 1525
BtsI	GCAGTG	1 cut(s)	1483
BtsIMutI	CAGTG	4 cut(s)	435, 713, 1193, 1483
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	4 cut(s)	352, 405, 963, 1119
CfoI	GCGC	2 cut(s)	9, 798
Cfr13I	GGNCC	1 cut(s)	1134
CseI	GACGC	1 cut(s)	879
Csp6I	GTAC	2 cut(s)	261, 1018
CviAII	CATG	4 cut(s)	302, 556, 962, 1118
CviQI	GTAC	2 cut(s)	261, 1018
DdeI	CTNAG	9 cut(s)	235, 294, 450, 957, 981, 1068, 1148, 1406, 1500
DpnI	GATC	3 cut(s)	1306, 1356, 1455
DpnII	GATC	3 cut(s)	1304, 1354, 1453
DriI	GACNNNNNGTC	1 cut(s)	1441
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	1162
Eam1105I	GACNNNNNGTC	1 cut(s)	1441
EarI	CTCTTC	1 cut(s)	1162
EciI	GGCGGA	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	543
Eco31I	GGTCTC	3 cut(s)	980, 1144, 1372
Eco32I	GATATC	2 cut(s)	601, 1403
Eco57I	CTGAAG	3 cut(s)	249, 585, 1386
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	4 cut(s)	28, 283, 670, 825
EcoRV	GATATC	2 cut(s)	601, 1403
EcoT14I	CCWWGG	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	543
Esp3I	CGTCTC	1 cut(s)	1520
FaeI	CATG	4 cut(s)	305, 559, 965, 1121
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	4 cut(s)	301, 555, 961, 1117
FauNDI	CATATG	2 cut(s)	1222, 1588
Fnu4HI	GCNGC	2 cut(s)	10, 1344
FokI	GGATG	6 cut(s)	467, 538, 1155, 1202, 1374, 1532
Fsp4HI	GCNGC	2 cut(s)	10, 1344
FspBI	CTAG	6 cut(s)	48, 276, 351, 441, 579, 1302
GlaI	GCGC	2 cut(s)	8, 797
GluI	GCNGC	2 cut(s)	10, 1344
GsaI	CCCAGC	1 cut(s)	1325
GsuI	CTGGAG	2 cut(s)	737, 1217
HaeIII	GGCC	3 cut(s)	461, 542, 1135
HapII	CCGG	1 cut(s)	1517
HgaI	GACGC	1 cut(s)	879
HhaI	GCGC	2 cut(s)	9, 798
Hin1II	CATG	4 cut(s)	305, 559, 965, 1121
Hin6I	GCGC	2 cut(s)	7, 796
HinP1I	GCGC	2 cut(s)	7, 796
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	6 cut(s)	233, 298, 1010, 1394, 1508, 1562
HpaII	CCGG	1 cut(s)	1517
HphI	GGTGA	3 cut(s)	389, 785, 1506
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	176, 1391, 1398, 1457
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	8 cut(s)	109, 187, 211, 760, 764, 856, 1036, 1182
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	3 cut(s)	66, 1211, 1276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	379, 616, 1349
HpyF3I	CTNAG	9 cut(s)	235, 294, 450, 957, 981, 1068, 1148, 1406, 1500
HpySE526I	ACGT	3 cut(s)	66, 1211, 1276
Hsp92II	CATG	4 cut(s)	305, 559, 965, 1121
HspAI	GCGC	2 cut(s)	7, 796
Kzo9I	GATC	3 cut(s)	1304, 1354, 1453
LmnI	GCTCC	2 cut(s)	1198, 1244
Lsp1109I	GCAGC	1 cut(s)	1330
LweI	GCATC	3 cut(s)	337, 1054, 1379
MaeI	CTAG	6 cut(s)	48, 276, 351, 441, 579, 1302
MaeII	ACGT	3 cut(s)	66, 1211, 1276
MaeIII	GTNAC	2 cut(s)	365, 395
MalI	GATC	3 cut(s)	1306, 1356, 1455
MboI	GATC	3 cut(s)	1304, 1354, 1453
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	5 cut(s)	279, 468, 1128, 1142, 1439
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	227, 1571
MmeI	TCCRAC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	5 cut(s)	246, 570, 696, 1080, 1257
MslI	CAYNNNNRTG	2 cut(s)	327, 1122
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	1 cut(s)	1568
MspCI	CTTAAG	1 cut(s)	1079
MspI	CCGG	1 cut(s)	1517
MspR9I	CCNGG	4 cut(s)	30, 285, 672, 827
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	4 cut(s)	30, 285, 672, 827
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	379, 616, 1349
NdeI	CATATG	2 cut(s)	1222, 1588
NdeII	GATC	3 cut(s)	1304, 1354, 1453
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	4 cut(s)	305, 559, 965, 1121
NlaIV	GGNNCC	4 cut(s)	476, 1200, 1246, 1425
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	3 cut(s)	559, 965, 1121
NspV	TTCGAA	1 cut(s)	1040
PaeI	GCATGC	2 cut(s)	965, 1121
PaqCI	CACCTGC	1 cut(s)	408
PasI	CCCWGGG	1 cut(s)	826
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	4 cut(s)	298, 1010, 1394, 1508
PkrI	GCNGC	2 cut(s)	11, 1345
PleI	GAGTC	2 cut(s)	227, 1570
PpsI	GAGTC	2 cut(s)	227, 1570
Psp6I	CCWGG	4 cut(s)	28, 283, 670, 825
PspEI	GGTNACC	1 cut(s)	365
PspFI	CCCAGC	1 cut(s)	1321
PspGI	CCWGG	4 cut(s)	28, 283, 670, 825
PspN4I	GGNNCC	4 cut(s)	476, 1200, 1246, 1425
PspPI	GGNCC	1 cut(s)	1134
PstI	CTGCAG	2 cut(s)	409, 904
PvuII	CAGCTG	1 cut(s)	1568
RsaI	GTAC	2 cut(s)	262, 1019
RsaNI	GTAC	2 cut(s)	261, 1018
RseI	CAYNNNNRTG	2 cut(s)	327, 1122
SaqAI	TTAA	5 cut(s)	246, 570, 696, 1080, 1257
SatI	GCNGC	2 cut(s)	10, 1344
Sau3AI	GATC	3 cut(s)	1304, 1354, 1453
Sau96I	GGNCC	1 cut(s)	1134
SchI	GAGTC	2 cut(s)	227, 1571
ScrFI	CCNGG	4 cut(s)	30, 285, 672, 827
SfaNI	GCATC	3 cut(s)	337, 1054, 1379
SfcI	CTRYAG	3 cut(s)	405, 900, 1338
SfuI	TTCGAA	1 cut(s)	1040
SmiMI	CAYNNNNRTG	2 cut(s)	327, 1122
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
SphI	GCATGC	2 cut(s)	965, 1121
Sse9I	AATT	5 cut(s)	279, 468, 1128, 1142, 1439
SsiI	CCGC	4 cut(s)	508, 675, 1382, 1555
SspMI	CTAG	6 cut(s)	48, 276, 351, 441, 579, 1302
StyD4I	CCNGG	4 cut(s)	28, 283, 670, 825
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	3 cut(s)	69, 1214, 1279
TaqI	TCGA	1 cut(s)	1040
TasI	AATT	5 cut(s)	279, 468, 1128, 1142, 1439
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	4 cut(s)	298, 1010, 1394, 1508
Tru1I	TTAA	5 cut(s)	246, 570, 696, 1080, 1257
Tru9I	TTAA	5 cut(s)	246, 570, 696, 1080, 1257
TscAI	CASTG	4 cut(s)	435, 720, 1200, 1483
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	9, 1343
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	311, 1140
TspRI	CASTG	4 cut(s)	435, 720, 1200, 1483
Vha464I	CTTAAG	1 cut(s)	1079
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	3 cut(s)	559, 965, 1121
XspI	CTAG	6 cut(s)	48, 276, 351, 441, 579, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.