pycom420g01020
MYB Family

Myb-like protein X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0003553
Physical Location & Seq
Forward (+)
1449690 .. 1451027
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g01020.1

Sequence Viewer

Length: 1068 bp
ATGGTCAGATTGCTGACCAAGGGTACTGACATTTTGGCCAAAGTTAAGGAAAAGAACAAGGACAGGAGAGTTGATGACAGAAGGAGAGATGGGCAAGGAGTCAGGGGGGCAGCACAGGTTAGTGGGAACACGATGGTTCAGAACCTTCTTGGTGTGGTTGAACCTAAAGTTGGACTTTCCAGACCATTGGCGAGCAACGTGGATAGAAAGATTGTTGGAAAAGAAAAGACCAAAGAGAAGGAAGGTGGTGACAAACTCAAGGACAAACATAGAGAGAAGAAAAAACAAGGGATAGACAAGGACAAAGATAAAGAGAAGAAAAATGAAGTGAAAGCAAAGGAGAAAATTGAATCTAAGAATGGAGAGCCATATAAAGAGAAGAAAAAGGAAGAGAAAGCAAAGGAGAAAAATGAAACTAAGAATGCAGAGCCAGATAAATTAAGAAAGAGCGATAAAGAGGATCACATAGATTCCCATAGTGTTATAACCTCCCAGCTTCCAGAGGACAGCAACGAAACTGCTGGTGCTGATGGAAATCTTAAGAAACGAAAGGACATACAGACGAATGGAGTTGTGCATGCCAACGATATTAGGCCCAGTAAACTGTTGAGACCCTCTTCATCCTCTCATCAATTGCCGGTAAATGGAAGAACACTAGGACCTTGCCAAAATTCCATCCCATATGTGTCAGATAGGCTGGGTGCAGCAAATGACATTAAGGTGGACATCAAGGACCGCAAGATAAATGGTAGTGGTGAAGCTCCGTTATTGGCTGTCTCCACTACCAAGCCGACATCTATTGCTACACAGGCTGTTCCTATTGCTGAAGCATGCATGAAACCACCCCATCCGGATTCCAGATATCTAAGCCATGTGTATTTGGTTCCGAAATTGGATGAAATGCCTGATCATGACGATCAAGATTGGTTGTTTGGGTGCAGTGATGCCCAATTAAAGAAACCCAAGGTGGAATCTTCAAAGGTTGAGGAGACACCTAAGGCATGGTCAGAGGTCCTGCGGATAGAATCAGCTGATGTACATGCTCTGCCGTATGTCATTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.53

Weight (kDa)

9.27

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccIII TCCGGA 1 cut(s) 850
AciI CCGC 2 cut(s) 736, 1018
AclWI GGATC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 2 cut(s) 25, 1038
AfiI CCNNNNNNNGG 2 cut(s) 170, 644
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 3 cut(s) 161, 350, 978
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 3 cut(s) 496, 761, 1031
AluI AGCT 3 cut(s) 496, 761, 1031
Alw26I GTCTC 3 cut(s) 604, 781, 983
AlwI GGATC 1 cut(s) 468
Aor13HI TCCGGA 1 cut(s) 850
AoxI GGCC 2 cut(s) 36, 593
ApeKI GCWGC 2 cut(s) 110, 704
ApoI RAATTY 1 cut(s) 670
AspS9I GGNCC 4 cut(s) 594, 659, 733, 1012
AsuHPI GGTGA 2 cut(s) 260, 767
AvaII GGWCC 3 cut(s) 659, 733, 1012
AxyI CCTNAGG 1 cut(s) 996
BalI TGGCCA 1 cut(s) 38
BbvI GCAGC 2 cut(s) 122, 716
BccI CCATC 5 cut(s) 83, 127, 524, 683, 855
BceAI ACGGC 1 cut(s) 1033
BclI TGATCA 1 cut(s) 907
BcoDI GTCTC 3 cut(s) 604, 781, 983
BfaI CTAG 1 cut(s) 656
BfrI CTTAAG 1 cut(s) 539
BisI GCNGC 2 cut(s) 111, 705
BlsI GCNGC 2 cut(s) 112, 706
Bme18I GGWCC 3 cut(s) 659, 733, 1012
BmgT120I GGNCC 4 cut(s) 594, 659, 733, 1012
BmiI GGNNCC 1 cut(s) 885
BmrI ACTGGG 1 cut(s) 591
BmsI GCATC 1 cut(s) 934
BmuI ACTGGG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 2 cut(s) 18, 963
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 644
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 1 cut(s) 597
Bse21I CCTNAGG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 850
BseDI CCNNGG 2 cut(s) 18, 963
BseGI GGATG 4 cut(s) 620, 675, 847, 901
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 2 cut(s) 170, 644
BseNI ACTGG 1 cut(s) 597
BseRI GAGGAG 1 cut(s) 1001
BseXI GCAGC 2 cut(s) 122, 716
BseYI CCCAGC 2 cut(s) 492, 697
BsgI GTGCAG 2 cut(s) 723, 958
BshFI GGCC 2 cut(s) 38, 595
BsiSI CCGG 2 cut(s) 638, 851
BslI CCNNNNNNNGG 2 cut(s) 170, 644
BsmAI GTCTC 3 cut(s) 604, 781, 983
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 2 cut(s) 38, 595
Bso31I GGTCTC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 850
Bsp1407I TGTACA 1 cut(s) 1036
Bsp143I GATC 3 cut(s) 460, 907, 916
BspACI CCGC 2 cut(s) 736, 1018
BspANI GGCC 2 cut(s) 38, 595
BspEI TCCGGA 1 cut(s) 850
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 1 cut(s) 885
BspPI GGATC 1 cut(s) 468
BspTI CTTAAG 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 637
BsrGI TGTACA 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 597
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 18, 963
BssMI GATC 3 cut(s) 460, 907, 916
BssT1I CCWWGG 2 cut(s) 18, 963
Bst4CI ACNGT 1 cut(s) 606
Bst6I CTCTTC 2 cut(s) 384, 622
BstAFI CTTAAG 1 cut(s) 539
BstAUI TGTACA 1 cut(s) 1036
BstC8I GCNNGC 3 cut(s) 193, 579, 832
BstDEI CTNAG 4 cut(s) 354, 417, 866, 996
BstF5I GGATG 4 cut(s) 620, 675, 847, 901
BstKTI GATC 3 cut(s) 463, 910, 919
BstMAI GTCTC 3 cut(s) 604, 781, 983
BstMBI GATC 3 cut(s) 460, 907, 916
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNSI RCATGY 3 cut(s) 581, 834, 1043
BstV1I GCAGC 2 cut(s) 122, 716
BstXI CCANNNNNNTGG 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 996
BsuRI GGCC 2 cut(s) 38, 595
BtsCI GGATG 4 cut(s) 620, 675, 847, 901
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 1 cut(s) 946
Cac8I GCNNGC 3 cut(s) 193, 579, 832
CciI TCATGA 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 4 cut(s) 594, 659, 733, 1012
Csp6I GTAC 2 cut(s) 24, 1037
CviAII CATG 7 cut(s) 578, 831, 835, 872, 911, 1002, 1040
CviQI GTAC 2 cut(s) 24, 1037
DdeI CTNAG 4 cut(s) 354, 417, 866, 996
DpnI GATC 3 cut(s) 462, 909, 918
DpnII GATC 3 cut(s) 460, 907, 916
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 384, 622
EarI CTCTTC 2 cut(s) 384, 622
Eco130I CCWWGG 2 cut(s) 18, 963
Eco31I GGTCTC 1 cut(s) 604
Eco32I GATATC 1 cut(s) 863
Eco47I GGWCC 3 cut(s) 659, 733, 1012
Eco57I CTGAAG 1 cut(s) 846
Eco81I CCTNAGG 1 cut(s) 996
EcoO109I RGGNCCY 2 cut(s) 659, 1012
EcoRV GATATC 1 cut(s) 863
EcoT14I CCWWGG 2 cut(s) 18, 963
EcoT22I ATGCAT 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 18, 963
FaeI CATG 7 cut(s) 581, 834, 838, 875, 914, 1005, 1043
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 7 cut(s) 577, 830, 834, 871, 910, 1001, 1039
FauNDI CATATG 1 cut(s) 682
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 2 cut(s) 111, 705
FokI GGATG 4 cut(s) 607, 662, 834, 908
Fsp4HI GCNGC 2 cut(s) 111, 705
FspBI CTAG 1 cut(s) 656
GluI GCNGC 2 cut(s) 111, 705
GsaI CCCAGC 2 cut(s) 496, 701
HaeIII GGCC 2 cut(s) 38, 595
HapII CCGG 2 cut(s) 638, 851
Hin1II CATG 7 cut(s) 581, 834, 838, 875, 914, 1005, 1043
HinfI GANTC 6 cut(s) 99, 350, 470, 854, 971, 1025
HpaII CCGG 2 cut(s) 638, 851
HphI GGTGA 2 cut(s) 260, 767
Hpy166II GTNNAC 2 cut(s) 602, 724
Hpy188I TCNGA 5 cut(s) 8, 141, 691, 888, 1009
Hpy188III TCNNGA 6 cut(s) 180, 500, 851, 858, 911, 920
Hpy8I GTNNAC 2 cut(s) 602, 724
HpyAV CCTTC 4 cut(s) 75, 155, 232, 236
HpyCH4III ACNGT 1 cut(s) 606
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 425, 577, 704, 834, 939
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 4 cut(s) 354, 417, 866, 996
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 7 cut(s) 581, 834, 838, 875, 914, 1005, 1043
Kpn2I TCCGGA 1 cut(s) 850
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 3 cut(s) 460, 907, 916
LmnI GCTCC 1 cut(s) 766
Lsp1109I GCAGC 2 cut(s) 122, 716
LweI GCATC 1 cut(s) 934
MaeI CTAG 1 cut(s) 656
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 462, 909, 918
MboI GATC 3 cut(s) 460, 907, 916
MboII GAAGA 7 cut(s) 289, 328, 391, 401, 609, 660, 966
MfeI CAATTG 1 cut(s) 632
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 6 cut(s) 345, 437, 632, 670, 890, 950
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 2 cut(s) 151, 196
MnlI CCTC 7 cut(s) 451, 496, 499, 625, 634, 979, 1003
Mox20I TGGCCA 1 cut(s) 38
Mph1103I ATGCAT 1 cut(s) 836
MroI TCCGGA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 38
MseI TTAA 5 cut(s) 45, 440, 540, 717, 953
MslI CAYNNNNRTG 1 cut(s) 719
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 1031
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 2 cut(s) 638, 851
MunI CAATTG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 809
NdeI CATATG 1 cut(s) 682
NdeII GATC 3 cut(s) 460, 907, 916
NlaIII CATG 7 cut(s) 581, 834, 838, 875, 914, 1005, 1043
NlaIV GGNNCC 1 cut(s) 885
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 836
NspI RCATGY 3 cut(s) 581, 834, 1043
PaeI GCATGC 2 cut(s) 581, 834
PagI TCATGA 1 cut(s) 910
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 5 cut(s) 350, 470, 854, 971, 1025
PkrI GCNGC 2 cut(s) 112, 706
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 2 cut(s) 659, 1012
PsiI TTATAA 1 cut(s) 485
Psp5II RGGWCCY 2 cut(s) 659, 1012
PspFI CCCAGC 2 cut(s) 492, 697
PspN4I GGNNCC 1 cut(s) 885
PspPI GGNCC 4 cut(s) 594, 659, 733, 1012
PspPPI RGGWCCY 2 cut(s) 659, 1012
PvuII CAGCTG 1 cut(s) 1031
RsaI GTAC 2 cut(s) 25, 1038
RsaNI GTAC 2 cut(s) 24, 1037
RseI CAYNNNNRTG 1 cut(s) 719
SaqAI TTAA 5 cut(s) 45, 440, 540, 717, 953
SatI GCNGC 2 cut(s) 111, 705
Sau3AI GATC 3 cut(s) 460, 907, 916
Sau96I GGNCC 4 cut(s) 594, 659, 733, 1012
SchI GAGTC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 934
SinI GGWCC 3 cut(s) 659, 733, 1012
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 2 cut(s) 257, 539
SmoI CTYRAG 2 cut(s) 257, 539
SphI GCATGC 2 cut(s) 581, 834
Sse9I AATT 6 cut(s) 345, 437, 632, 670, 890, 950
SsiI CCGC 2 cut(s) 736, 1018
SspMI CTAG 1 cut(s) 656
StyI CCWWGG 2 cut(s) 18, 963
TaaI ACNGT 1 cut(s) 606
TaiI ACGT 1 cut(s) 201
TasI AATT 6 cut(s) 345, 437, 632, 670, 890, 950
TatI WGTACW 1 cut(s) 1036
TfiI GAWTC 5 cut(s) 350, 470, 854, 971, 1025
Tru1I TTAA 5 cut(s) 45, 440, 540, 717, 953
Tru9I TTAA 5 cut(s) 45, 440, 540, 717, 953
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 110, 704
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 5 cut(s) 339, 426, 609, 851, 912
TspGWI ACGGA 1 cut(s) 753
TspRI CASTG 1 cut(s) 946
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 3 cut(s) 659, 733, 1012
XapI RAATTY 1 cut(s) 670
XceI RCATGY 3 cut(s) 581, 834, 1043
XspI CTAG 1 cut(s) 656
Zsp2I ATGCAT 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.