Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Reverse (-)

19389730 .. 19390227

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0122600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACGAAAAAGGCTTATTGCGGCGTCATAACTGTTGCTCCGGCGAGCGAAATCAATGTCTCTGACGAAGTGCAAAGCCAGGTCAAGTCTTCGTACAACGATAAGTACTGTGGGGCATCAAGTAACTTCACCAAAAGTTTCAAGGAAGGAGAGTTCGTGGACAAGCGCAGTGGGCAGTGCGGCTACAAGCAAGAGGCCAAGTACACCTCGACGGACAAGTATGTCGACAAGACTCAGGGGTATACCACCGAGTACAAGACTCAGCTCAAGGTCACCAAGTCTGTGTACACCAAGAAGAGTGCTAATTTAGGAACCAAGTCCAGCTACAAACGTTTCAACTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

9.39

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	225, 242
AciI	CCGC	2 cut(s)	21, 180
AclI	AACGTT	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	5 cut(s)	95, 107, 203, 254, 287
AgsI	TTSAA	2 cut(s)	142, 337
AjnI	CCWGG	1 cut(s)	78
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	265, 324
AluI	AGCT	2 cut(s)	265, 324
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	195
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	121, 265
BbsI	GAAGAC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	22, 181
BlsI	GCNGC	2 cut(s)	23, 182
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	24
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 141, 171
BseBI	CCWGG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	248, 275
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	285
BspACI	CCGC	2 cut(s)	21, 180
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	247, 274
BspLI	GGNNCC	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	285
BssNAI	GTATAC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	34, 110
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	234, 261
BstEII	GGTNACC	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	197
BtsI	GCAGTG	2 cut(s)	175, 182
BtsIMutI	CAGTG	2 cut(s)	175, 182
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	5 cut(s)	94, 106, 202, 253, 286
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviJI	RGCY	6 cut(s)	14, 78, 183, 197, 265, 324
CviKI_1	RGCY	6 cut(s)	14, 78, 183, 197, 265, 324
CviQI	GTAC	5 cut(s)	94, 106, 202, 253, 286
DdeI	CTNAG	2 cut(s)	234, 261
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	78
FaiI	YATR	3 cut(s)	29, 222, 243
FblI	GTMKAC	2 cut(s)	225, 242
Fnu4HI	GCNGC	2 cut(s)	22, 181
Fsp4HI	GCNGC	2 cut(s)	22, 181
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	22, 181
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	232, 259
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	121, 265
Hpy166II	GTNNAC	6 cut(s)	160, 204, 226, 243, 286, 288
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	6 cut(s)	160, 204, 226, 243, 286, 288
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	34, 110
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	234, 261
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	5 cut(s)	54, 65, 92, 221, 334
LweI	GCATC	1 cut(s)	125
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	122, 271
MboII	GAAGA	2 cut(s)	81, 307
MluCI	AATT	1 cut(s)	304
MlyI	GAGTC	2 cut(s)	226, 253
MnlI	CCTC	2 cut(s)	187, 217
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	23, 182
PleI	GAGTC	2 cut(s)	226, 253
PpsI	GAGTC	2 cut(s)	226, 253
Psp1406I	AACGTT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	313
RsaI	GTAC	5 cut(s)	95, 107, 203, 254, 287
RsaNI	GTAC	5 cut(s)	94, 106, 202, 253, 286
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	2 cut(s)	22, 181
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	2 cut(s)	226, 253
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	6 cut(s)	84, 209, 267, 273, 326, 334
SfaNI	GCATC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	21, 180
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	34, 110
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	209, 225
TasI	AATT	1 cut(s)	304
TatI	WGTACW	4 cut(s)	105, 201, 252, 285
TauI	GCSGC	2 cut(s)	24, 183
TscAI	CASTG	2 cut(s)	175, 182
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	175, 182
XmiI	GTMKAC	2 cut(s)	225, 242
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.