Rorug04G0122400
MYB Family

Myb-like protein X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003553
Physical Location & Seq
Forward (+)
19362965 .. 19364532
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0122400.1

Sequence Viewer

Length: 1092 bp
ATGGGTCGAGCTCCCTGCTGCGATAAGGCGAACGTGAAGAAGGGACCATGGTCACCTGAAGAGGATGCTACACTGAAGGCCTATATTGAAGAGCATGGAACTGGAGGCAACTGGATTGCCCTTCCTCAGAAAATTGGGCTCAAAAGATGTGGAAAAAGCTGCAGACTGAGATGGCTAAACTACCTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAGAAGAAGACAACATCATCTGCAACCTCTATATAAGTATTGGCAGCAGGTGGTCTATAATTGCAGCCCAATTGCCCGGAAGAACAGATAATGATATCAAGAACTACTGGAACACCCGGCTGAAGAAGAAGTTGCTTGGAAGGCGCAAACAGTCTGGGGCTAATCGGGGAAGTCAGGACCTCAAGGACGCCTCCGATGACGCACATCAGGCTTTAAGCAGCTCGGCCCTCGAGCGACTTCAACTTCATATGCAACTACAAAACCTTCAGAACCCTTTCTCTTTCTACAACAACCCTGCACTGTGGCCCAAGTTGCATCCCTTCCAAGAAAAGATGATCCAGACCGTCCAATCCATGAATGATCAAAACTCTGTCAACCCTCTGATGATGCAGCAGTTTTCTGTCCCCAGTCATGATCAGACAGTGCAAGGCCACAAGGTTAACGACCATTTCTACGAGCAAACTACTGGTGCTTTGGCAATTCAAGAGCAATACGCAAAATTATGCATCAATCCCAAGATGGATGAGTTGGAGAACGCATTGAGTGGCATGTCATCCTCCTTCATATCTACAAGCAATCCGGTGGACTCAACTATTGTAGTCGCGAAAGCCGATATGATCGAGCAGCAGGTTAATTCGAGCTTCCAAGCTCAACTCGATGGCATTAACAACTCTGTCGGTTTCACATCACAGCAGCAAGATGATCAGATGGCTGAATTTGATTGTTTCAAGGAAATGAATGTCTCCAAGGACAGCTTAATGTGGTGGGCTAATGACTTCGACAACAAATCTGCATCATCAAACTCCTGGGATTCTACTTCTGTTCTTCAGTCCCAAGGGATGTTTCAAGATTACGAATTAGGTTATAACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

41.01

Weight (kDa)

5.79

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.6e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 5.3e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1083
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 2 cut(s) 255, 835
AccII CGCG 1 cut(s) 821
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 5 cut(s) 78, 95, 359, 467, 1028
AcyI GRCGYC 1 cut(s) 405
AgsI TTSAA 5 cut(s) 89, 458, 701, 946, 1064
AjnI CCWGG 1 cut(s) 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 1044, 1076
AluBI AGCT 6 cut(s) 11, 159, 438, 858, 866, 972
AluI AGCT 6 cut(s) 11, 159, 438, 858, 866, 972
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 964
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 5 cut(s) 78, 188, 441, 521, 646
ApeKI GCWGC 8 cut(s) 18, 159, 261, 281, 435, 607, 841, 910
ApoI RAATTY 1 cut(s) 932
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 5 cut(s) 44, 189, 394, 442, 522
AsuC2I CCSGG 2 cut(s) 294, 334
AsuHPI GGTGA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 2 cut(s) 44, 394
AxyI CCTNAGG 1 cut(s) 185
BanII GRGCYC 2 cut(s) 13, 141
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 8 cut(s) 5, 146, 273, 293, 447, 619, 853, 922
BccI CCATC 4 cut(s) 165, 730, 869, 919
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 1024
BclI TGATCA 3 cut(s) 577, 631, 919
BcnI CCSGG 2 cut(s) 294, 334
BcoDI GTCTC 1 cut(s) 964
BfmI CTRYAG 2 cut(s) 160, 1088
BfuAI ACCTGC 2 cut(s) 255, 835
BisI GCNGC 8 cut(s) 19, 160, 262, 282, 436, 608, 842, 911
BlsI GCNGC 8 cut(s) 20, 161, 263, 283, 437, 609, 843, 912
Bme1390I CCNGG 3 cut(s) 294, 334, 1024
Bme18I GGWCC 2 cut(s) 44, 394
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 5 cut(s) 44, 189, 394, 442, 522
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 294, 334, 1024
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 5 cut(s) 55, 541, 594, 732, 1019
BmuI ACTGGG 1 cut(s) 618
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 294, 334
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 4 cut(s) 47, 963, 1023, 1051
BsaWI WCCGGW 1 cut(s) 796
Bse1I ACTGG 5 cut(s) 106, 116, 329, 624, 688
Bse21I CCTNAGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 1024
BseDI CCNNGG 4 cut(s) 47, 963, 1023, 1051
BseGI GGATG 5 cut(s) 70, 532, 745, 770, 1062
BseMII CTCAG 4 cut(s) 140, 158, 176, 228
BseNI ACTGG 5 cut(s) 106, 116, 329, 624, 688
BseXI GCAGC 8 cut(s) 5, 146, 273, 293, 447, 619, 853, 922
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 821
BshFI GGCC 5 cut(s) 80, 190, 443, 523, 648
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 3 cut(s) 294, 334, 797
BslFI GGGAC 3 cut(s) 57, 605, 1033
BsmAI GTCTC 1 cut(s) 964
BsmFI GGGAC 3 cut(s) 57, 605, 1033
BsnI GGCC 5 cut(s) 80, 190, 443, 523, 648
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 13, 141
Bsp143I GATC 5 cut(s) 552, 577, 631, 834, 919
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 821
BspANI GGCC 5 cut(s) 80, 190, 443, 523, 648
BspCNI CTCAG 4 cut(s) 139, 159, 177, 227
BspFNI CGCG 1 cut(s) 821
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 2 cut(s) 255, 835
BspPI GGATC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 84
BsrI ACTGG 5 cut(s) 106, 116, 329, 624, 688
BssECI CCNNGG 4 cut(s) 47, 963, 1023, 1051
BssMI GATC 5 cut(s) 552, 577, 631, 834, 919
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 3 cut(s) 47, 963, 1051
Bst2UI CCWGG 1 cut(s) 1024
Bst4CI ACNGT 4 cut(s) 369, 519, 562, 640
Bst6I CTCTTC 2 cut(s) 54, 84
BstACI GRCGYC 1 cut(s) 405
BstDEI CTNAG 4 cut(s) 126, 167, 185, 214
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 5 cut(s) 70, 532, 745, 770, 1062
BstFNI CGCG 1 cut(s) 821
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 5 cut(s) 555, 580, 634, 837, 922
BstMAI GTCTC 1 cut(s) 964
BstMBI GATC 5 cut(s) 552, 577, 631, 834, 919
BstMWI GCNNNNNNNGC 3 cut(s) 358, 425, 529
BstNI CCWGG 1 cut(s) 1024
BstNSI RCATGY 1 cut(s) 769
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 292, 332, 1022
BstSFI CTRYAG 2 cut(s) 160, 1088
BstUI CGCG 1 cut(s) 821
BstV1I GCAGC 8 cut(s) 5, 146, 273, 293, 447, 619, 853, 922
BstV2I GAAGAC 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 5 cut(s) 80, 190, 443, 523, 648
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 70, 532, 745, 770, 1062
BtsIMutI CAGTG 3 cut(s) 71, 515, 645
BtuMI TCGCGA 1 cut(s) 821
BveI ACCTGC 2 cut(s) 255, 835
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 5 cut(s) 44, 189, 394, 442, 522
CseI GACGC 2 cut(s) 413, 425
CspCI CAANNNNNGTGG 4 cut(s) 130, 165, 187, 222
CviAII CATG 6 cut(s) 48, 95, 203, 571, 629, 766
DdeI CTNAG 4 cut(s) 126, 167, 185, 214
DpnI GATC 5 cut(s) 554, 579, 633, 836, 921
DpnII GATC 5 cut(s) 552, 577, 631, 834, 919
Eam1104I CTCTTC 2 cut(s) 54, 84
EarI CTCTTC 2 cut(s) 54, 84
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 47, 963, 1051
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 13, 141
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 44, 394
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 5 cut(s) 78, 95, 359, 467, 1028
Eco81I CCTNAGG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 446
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 1022
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 3 cut(s) 47, 963, 1051
EcoT22I ATGCAT 1 cut(s) 725
EcoT38I GRGCYC 2 cut(s) 13, 141
ErhI CCWWGG 3 cut(s) 47, 963, 1051
FaeI CATG 6 cut(s) 51, 98, 206, 574, 632, 769
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FaqI GGGAC 3 cut(s) 57, 605, 1033
FatI CATG 6 cut(s) 47, 94, 202, 570, 628, 765
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 3 cut(s) 577, 631, 919
Fnu4HI GCNGC 8 cut(s) 19, 160, 262, 282, 436, 608, 842, 911
FokI GGATG 5 cut(s) 77, 519, 752, 757, 1069
FriOI GRGCYC 2 cut(s) 13, 141
Fsp4HI GCNGC 8 cut(s) 19, 160, 262, 282, 436, 608, 842, 911
GlaI GCGC 1 cut(s) 362
GluI GCNGC 8 cut(s) 19, 160, 262, 282, 436, 608, 842, 911
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 5 cut(s) 80, 190, 443, 523, 648
HapII CCGG 3 cut(s) 294, 334, 797
HgaI GACGC 2 cut(s) 413, 425
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 6 cut(s) 51, 98, 206, 574, 632, 769
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 592, 658
HindII GTYRAC 2 cut(s) 592, 658
HinfI GANTC 3 cut(s) 210, 803, 1028
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 3 cut(s) 294, 334, 797
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 3 cut(s) 592, 658, 802
Hpy188I TCNGA 7 cut(s) 129, 217, 412, 486, 600, 636, 924
Hpy188III TCNNGA 7 cut(s) 316, 392, 556, 629, 701, 820, 1064
Hpy8I GTNNAC 3 cut(s) 592, 658, 802
HpyAV CCTTC 7 cut(s) 34, 70, 131, 351, 491, 547, 787
HpyCH4III ACNGT 4 cut(s) 369, 519, 562, 640
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 425, 529
HpyF3I CTNAG 4 cut(s) 126, 167, 185, 214
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 6 cut(s) 51, 98, 206, 574, 632, 769
HspAI GCGC 1 cut(s) 361
Ksp22I TGATCA 3 cut(s) 577, 631, 919
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 5 cut(s) 552, 577, 631, 834, 919
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 8 cut(s) 5, 146, 273, 293, 447, 619, 853, 922
LweI GCATC 5 cut(s) 55, 541, 594, 732, 1019
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 51
MalI GATC 5 cut(s) 554, 579, 633, 836, 921
MboI GATC 5 cut(s) 552, 577, 631, 834, 919
MfeI CAATTG 1 cut(s) 287
MhlI GDGCHC 2 cut(s) 13, 141
MluCI AATT 8 cut(s) 132, 276, 287, 696, 716, 850, 932, 1073
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 726
Mph1103I ATGCAT 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 5 cut(s) 431, 657, 849, 882, 974
MspI CCGG 3 cut(s) 294, 334, 797
MspR9I CCNGG 3 cut(s) 294, 334, 1024
MunI CAATTG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 1024
MvnI CGCG 1 cut(s) 821
MwoI GCNNNNNNNGC 3 cut(s) 358, 425, 529
NciI CCSGG 2 cut(s) 294, 334
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 465
NdeII GATC 5 cut(s) 552, 577, 631, 834, 919
NlaIII CATG 6 cut(s) 51, 98, 206, 574, 632, 769
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 51
NruI TCGCGA 1 cut(s) 821
NsiI ATGCAT 1 cut(s) 725
NspI RCATGY 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 446
PagI TCATGA 1 cut(s) 628
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 210, 1028
PkrI GCNGC 8 cut(s) 20, 161, 263, 283, 437, 609, 843, 912
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PpuMI RGGWCCY 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 49
PsiI TTATAA 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 1022
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 1022
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 5 cut(s) 44, 189, 394, 442, 522
PspPPI RGGWCCY 1 cut(s) 394
PspXI VCTCGAGB 1 cut(s) 446
PstI CTGCAG 1 cut(s) 164
RruI TCGCGA 1 cut(s) 821
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 5 cut(s) 431, 657, 849, 882, 974
SatI GCNGC 8 cut(s) 19, 160, 262, 282, 436, 608, 842, 911
Sau3AI GATC 5 cut(s) 552, 577, 631, 834, 919
Sau96I GGNCC 5 cut(s) 44, 189, 394, 442, 522
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 294, 334, 1024
SduI GDGCHC 2 cut(s) 13, 141
SfaNI GCATC 5 cut(s) 55, 541, 594, 732, 1019
SfcI CTRYAG 2 cut(s) 160, 1088
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 2 cut(s) 44, 394
SlaI CTCGAG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 398, 446
SmoI CTYRAG 2 cut(s) 398, 446
Sse9I AATT 8 cut(s) 132, 276, 287, 696, 716, 850, 932, 1073
SseBI AGGCCT 1 cut(s) 80
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 3 cut(s) 292, 332, 1022
StyI CCWWGG 3 cut(s) 47, 963, 1051
TaaI ACNGT 4 cut(s) 369, 519, 562, 640
TaiI ACGT 1 cut(s) 36
TaqI TCGA 6 cut(s) 7, 447, 837, 854, 873, 996
TasI AATT 8 cut(s) 132, 276, 287, 696, 716, 850, 932, 1073
TfiI GAWTC 2 cut(s) 210, 1028
Tru1I TTAA 5 cut(s) 431, 657, 849, 882, 974
Tru9I TTAA 5 cut(s) 431, 657, 849, 882, 974
TscAI CASTG 3 cut(s) 78, 522, 645
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 8 cut(s) 18, 159, 261, 281, 435, 607, 841, 910
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 4 cut(s) 452, 587, 769, 968
TspRI CASTG 3 cut(s) 78, 522, 645
VpaK11BI GGWCC 2 cut(s) 44, 394
XapI RAATTY 1 cut(s) 932
XceI RCATGY 1 cut(s) 769
XhoI CTCGAG 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.