Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Forward (+)

45329196 .. 45337552

Gene Structure 8357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGTATCCTTACGATTATTCTTCTATATGTCTTTATAATTTACAGGAGAAGCAGAGAGAAAAGAAGCATAAAAAGGATAAGAAGGACAAAGAAAAAAGAGAAAAAGAGAAAAGTGAGAAAGATAGAAGTGATGGAAAACATCGGGAGAAGAAAGACAAGAAGGAAAAGAACAGAGACAAAAAGAAGGACAAGGAAAAAGACACAGACAAAGTTAAAGATAAACTTGGTACTTCAGATGGAACTAGAATTCCAGGTAAAACTGAGAATCATGTTGCAGAGAAACTCGTTCATAAAGATGACAGAGACAAGAGAGATGCTAGCCAAGTTGGAGGTTACCAGCCAGAAAAGCTTGGTCAGAACAGTAACCTGCCTGCGGAGAACAGGAACTCTGTATCAGTGGAGGTGGCTAGGAAGACTAAGGATGAGGCCAGAGGAATTGGGAACCAGTTGGTTGAGAAGATTAGTGGTTCAGACCGCAAAAAAGATGAGGGGATGGTCAGATTGGTGGCCAAGGGAACTGGCATGTTGGCTGAAGTTAAGGAAACTAGCAAGGACAAGAGAGCTGATATCCGAAAGCCTGATGTGCAAGAAGTCAGAGTTGCAACACGGGTTAGTGGAAGTGCAATGGTGCAGAACCCTGGCGGAATGGTTCAGCCCAAAGTTAAAGGATTTCCGAAACCACTGGAGAGCAATGTTGAAAGAAAGACTGATGGAAAAGAAAAGACCAAAGAGAAGGAAGGTGATGATAAACGAGGAGAAAAGCGCAAGGATAAAGATAGAGAGAAGAAAACCCAGGGGAGAGATAAGGATAGAGATAAAGAGAAGAAGAAGGAGGAGAAAGCAAAGAAGAAGAATGCGTCAAAGACTGCAGAGCCAGATAAAGAGAAGAAAAAGGAAGACAAAGCAAATGAGAAAAATGGTTCTAAGCATGCAGAACCAGACAAATCTAAAGAGACCAATAAAGAGGTTTGTATTGATACCCAGTACAGAAAACCCTCCCAACTTCCGAAGGACAACTACAAATCTGCTGATGCTGAGGCGAACCTTAAGAAACGAAAGGACTTGACGACAAATGGAGTTTTGCATGCCAATGAAATTAGGCCCAATAAATTGCTGAGACCCTCTTCTTCTTCTCATCCATTGACTGAAAATGGAAGGACACTGGAGCCTTGCCAAACGTCCATCCCATATGTTTCAGATAAGCAGGGAGGAGCCAATAGTGTTAAAGTGGAGAGTAAGGAACGTAAGAAGAATGGCATTATTGAAGCTAGATCGTCATCTGTCTCCCCTGCAAAGCCTACTTCTATAGCTGCACAAGCTGATCCATTTGCTGAAGCATCTATGAGACCGCCCCATCCAGATTCCAGATATCTAAGTGAGGTTTATATGGTTCCAAAAATGGACAAATTGTCTGATGACGATCAAGACTGGTTGTTTGGTTGCAGTGATACCAAATCAAAGAAGCCTAAGATGGAATCTTCACCGGATGAAGAGACGGCAGAAGTGTGGTCAGAAGCTCTGCGGATAGAGTCAGCTGATGTTTGTGCTTTGCCATATGTCATTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

523

Amino Acids

59.22

Weight (kDa)

9.43

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	375
AciI	CCGC	5 cut(s)	374, 475, 642, 1349, 1522
AclWI	GGATC	1 cut(s)	1316
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	3 cut(s)	216, 552, 1353
AfaI	GTAC	2 cut(s)	229, 986
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	1046
AgsI	TTSAA	2 cut(s)	698, 1265
AhdI	GACNNNNNGTC	1 cut(s)	1408
AjnI	CCWGG	3 cut(s)	250, 637, 792
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
AluBI	AGCT	7 cut(s)	349, 563, 1268, 1310, 1319, 1517, 1535
AluI	AGCT	7 cut(s)	349, 563, 1268, 1310, 1319, 1517, 1535
Alw26I	GTCTC	7 cut(s)	168, 297, 947, 1111, 1288, 1339, 1487
AlwI	GGATC	1 cut(s)	1316
AoxI	GGCC	3 cut(s)	426, 507, 1100
ApeKI	GCWGC	1 cut(s)	1310
ApoI	RAATTY	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	1418, 1450
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	1 cut(s)	1101
AsuHPI	GGTGA	2 cut(s)	752, 1473
AsuNHI	GCTAGC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	509
BarI	GAAGNNNNNNTAC	2 cut(s)	1001, 1033
BbsI	GAAGAC	2 cut(s)	419, 903
BbvCI	CCTCAGC	1 cut(s)	1035
BbvI	GCAGC	1 cut(s)	1297
BccI	CCATC	7 cut(s)	125, 230, 487, 704, 1190, 1362, 1465
BceAI	ACGGC	1 cut(s)	1512
BciT130I	CCWGG	3 cut(s)	252, 639, 794
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	7 cut(s)	168, 297, 947, 1111, 1288, 1339, 1487
BfaI	CTAG	5 cut(s)	243, 318, 408, 546, 1269
BfmI	CTRYAG	2 cut(s)	867, 1305
BfrI	CTTAAG	1 cut(s)	1046
BfuAI	ACCTGC	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	1311
BlsI	GCNGC	1 cut(s)	1312
Bme1390I	CCNGG	3 cut(s)	252, 639, 794
BmeRI	GACNNNNNGTC	1 cut(s)	1408
BmgT120I	GGNCC	1 cut(s)	1101
BmiI	GGNNCC	4 cut(s)	443, 1167, 1213, 1392
BmrFI	CCNGG	3 cut(s)	252, 639, 794
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	3 cut(s)	304, 1021, 1346
BmtI	GCTAGC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	976
BpiI	GAAGAC	2 cut(s)	419, 903
BpmI	CTGGAG	2 cut(s)	704, 1184
Bpu10I	CCTNAGC	1 cut(s)	1035
BsaBI	GATNNNNATC	2 cut(s)	1276, 1419
BsaI	GGTCTC	3 cut(s)	947, 1111, 1339
BsaJI	CCNNGG	4 cut(s)	510, 637, 792, 793
BsaWI	WCCGGW	1 cut(s)	1483
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	6 cut(s)	445, 523, 687, 982, 1167, 1433
Bse3DI	GCAATG	2 cut(s)	630, 697
Bse8I	GATNNNNATC	2 cut(s)	1276, 1419
BseBI	CCWGG	3 cut(s)	252, 639, 794
BseDI	CCNNGG	4 cut(s)	510, 637, 792, 793
BseGI	GGATG	6 cut(s)	427, 498, 1135, 1182, 1354, 1492
BseJI	GATNNNNATC	2 cut(s)	1276, 1419
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	630, 697
BseMII	CTCAG	3 cut(s)	252, 1026, 1106
BseNI	ACTGG	6 cut(s)	445, 523, 687, 982, 1167, 1433
BseRI	GAGGAG	3 cut(s)	768, 848, 1224
BseXI	GCAGC	1 cut(s)	1297
BsgI	GTGCAG	2 cut(s)	650, 1296
BshFI	GGCC	3 cut(s)	428, 509, 1102
BsiSI	CCGG	1 cut(s)	1484
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	7 cut(s)	168, 297, 947, 1111, 1288, 1339, 1487
BsmBI	CGTCTC	1 cut(s)	1487
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	3 cut(s)	428, 509, 1102
Bso31I	GGTCTC	3 cut(s)	947, 1111, 1339
Bsp143I	GATC	3 cut(s)	1271, 1321, 1420
BspACI	CCGC	5 cut(s)	374, 475, 642, 1349, 1522
BspANI	GGCC	3 cut(s)	428, 509, 1102
BspCNI	CTCAG	3 cut(s)	253, 1027, 1107
BspLI	GGNNCC	4 cut(s)	443, 1167, 1213, 1392
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	1 cut(s)	375
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	1316
BspTI	CTTAAG	1 cut(s)	1046
BspTNI	GGTCTC	3 cut(s)	947, 1111, 1339
BsrDI	GCAATG	2 cut(s)	630, 697
BsrI	ACTGG	6 cut(s)	445, 523, 687, 982, 1167, 1433
BssECI	CCNNGG	4 cut(s)	510, 637, 792, 793
BssMI	GATC	3 cut(s)	1271, 1321, 1420
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	252, 639, 794
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	2 cut(s)	1129, 1485
BstAFI	CTTAAG	1 cut(s)	1046
BstC8I	GCNNGC	4 cut(s)	319, 372, 930, 1086
BstDEI	CTNAG	7 cut(s)	261, 417, 924, 1035, 1115, 1373, 1467
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	6 cut(s)	427, 498, 1135, 1182, 1354, 1492
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	3 cut(s)	1274, 1324, 1423
BstMAI	GTCTC	7 cut(s)	168, 297, 947, 1111, 1288, 1339, 1487
BstMBI	GATC	3 cut(s)	1271, 1321, 1420
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 583, 1316
BstNI	CCWGG	3 cut(s)	252, 639, 794
BstNSI	RCATGY	3 cut(s)	526, 932, 1088
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	250, 637, 792
BstSFI	CTRYAG	2 cut(s)	867, 1305
BstV1I	GCAGC	1 cut(s)	1297
BstV2I	GAAGAC	2 cut(s)	419, 903
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	428, 509, 1102
BtsCI	GGATG	6 cut(s)	427, 498, 1135, 1182, 1354, 1492
BtsI	GCAGTG	1 cut(s)	1450
BtsIMutI	CAGTG	4 cut(s)	402, 680, 1160, 1450
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	4 cut(s)	319, 372, 930, 1086
CfoI	GCGC	1 cut(s)	765
Cfr13I	GGNCC	1 cut(s)	1101
CseI	GACGC	1 cut(s)	846
Csp6I	GTAC	2 cut(s)	228, 985
CviAII	CATG	4 cut(s)	269, 523, 929, 1085
CviQI	GTAC	2 cut(s)	228, 985
DdeI	CTNAG	7 cut(s)	261, 417, 924, 1035, 1115, 1373, 1467
DpnI	GATC	3 cut(s)	1273, 1323, 1422
DpnII	GATC	3 cut(s)	1271, 1321, 1420
DriI	GACNNNNNGTC	1 cut(s)	1408
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	1129, 1485
Eam1105I	GACNNNNNGTC	1 cut(s)	1408
EarI	CTCTTC	2 cut(s)	1129, 1485
EciI	GGCGGA	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	510
Eco31I	GGTCTC	3 cut(s)	947, 1111, 1339
Eco32I	GATATC	2 cut(s)	568, 1370
Eco57I	CTGAAG	3 cut(s)	216, 552, 1353
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	246
EcoRII	CCWGG	3 cut(s)	250, 637, 792
EcoRV	GATATC	2 cut(s)	568, 1370
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	1487
FaeI	CATG	4 cut(s)	272, 526, 932, 1088
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	268, 522, 928, 1084
FauNDI	CATATG	2 cut(s)	1189, 1555
Fnu4HI	GCNGC	1 cut(s)	1311
FokI	GGATG	6 cut(s)	434, 505, 1122, 1169, 1341, 1499
Fsp4HI	GCNGC	1 cut(s)	1311
FspBI	CTAG	5 cut(s)	243, 318, 408, 546, 1269
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	1 cut(s)	1311
GsuI	CTGGAG	2 cut(s)	704, 1184
HaeIII	GGCC	3 cut(s)	428, 509, 1102
HapII	CCGG	1 cut(s)	1484
HgaI	GACGC	1 cut(s)	846
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	4 cut(s)	272, 526, 932, 1088
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	265, 1361, 1475, 1529
HpaII	CCGG	1 cut(s)	1484
HphI	GGTGA	2 cut(s)	752, 1473
Hpy188III	TCNNGA	4 cut(s)	143, 1358, 1365, 1424
HpyAV	CCTTC	8 cut(s)	76, 154, 178, 727, 731, 823, 1003, 1149
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	2 cut(s)	1178, 1243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 583, 1316
HpyF3I	CTNAG	7 cut(s)	261, 417, 924, 1035, 1115, 1373, 1467
HpySE526I	ACGT	2 cut(s)	1178, 1243
Hsp92II	CATG	4 cut(s)	272, 526, 932, 1088
HspAI	GCGC	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	1271, 1321, 1420
LmnI	GCTCC	2 cut(s)	1165, 1211
Lsp1109I	GCAGC	1 cut(s)	1297
LweI	GCATC	3 cut(s)	304, 1021, 1346
MaeI	CTAG	5 cut(s)	243, 318, 408, 546, 1269
MaeII	ACGT	2 cut(s)	1178, 1243
MaeIII	GTNAC	2 cut(s)	332, 362
MalI	GATC	3 cut(s)	1273, 1323, 1422
MboI	GATC	3 cut(s)	1271, 1321, 1420
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	6 cut(s)	37, 246, 435, 1095, 1109, 1406
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	1538
MmeI	TCCRAC	1 cut(s)	307
Mox20I	TGGCCA	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	5 cut(s)	213, 537, 663, 1047, 1224
MslI	CAYNNNNRTG	2 cut(s)	294, 1089
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	1535
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	1 cut(s)	1484
MspR9I	CCNGG	3 cut(s)	252, 639, 794
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	3 cut(s)	252, 639, 794
MwoI	GCNNNNNNNGC	3 cut(s)	346, 583, 1316
NdeI	CATATG	2 cut(s)	1189, 1555
NdeII	GATC	3 cut(s)	1271, 1321, 1420
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	4 cut(s)	272, 526, 932, 1088
NlaIV	GGNNCC	4 cut(s)	443, 1167, 1213, 1392
NspI	RCATGY	3 cut(s)	526, 932, 1088
PaeI	GCATGC	2 cut(s)	932, 1088
PasI	CCCWGGG	1 cut(s)	793
PctI	GAATGC	1 cut(s)	859
PfeI	GAWTC	3 cut(s)	265, 1361, 1475
PkrI	GCNGC	1 cut(s)	1312
PleI	GAGTC	1 cut(s)	1537
PpsI	GAGTC	1 cut(s)	1537
PsiI	TTATAA	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	250, 637, 792
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	250, 637, 792
PspN4I	GGNNCC	4 cut(s)	443, 1167, 1213, 1392
PspPI	GGNCC	1 cut(s)	1101
PstI	CTGCAG	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	1535
RsaI	GTAC	2 cut(s)	229, 986
RsaNI	GTAC	2 cut(s)	228, 985
RseI	CAYNNNNRTG	2 cut(s)	294, 1089
SaqAI	TTAA	5 cut(s)	213, 537, 663, 1047, 1224
SatI	GCNGC	1 cut(s)	1311
Sau3AI	GATC	3 cut(s)	1271, 1321, 1420
Sau96I	GGNCC	1 cut(s)	1101
SchI	GAGTC	1 cut(s)	1538
ScrFI	CCNGG	3 cut(s)	252, 639, 794
SfaNI	GCATC	3 cut(s)	304, 1021, 1346
SfcI	CTRYAG	2 cut(s)	867, 1305
SmiMI	CAYNNNNRTG	2 cut(s)	294, 1089
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
SphI	GCATGC	2 cut(s)	932, 1088
Sse9I	AATT	6 cut(s)	37, 246, 435, 1095, 1109, 1406
SsiI	CCGC	5 cut(s)	374, 475, 642, 1349, 1522
SspMI	CTAG	5 cut(s)	243, 318, 408, 546, 1269
StyD4I	CCNGG	3 cut(s)	250, 637, 792
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	2 cut(s)	1181, 1246
TasI	AATT	6 cut(s)	37, 246, 435, 1095, 1109, 1406
TatI	WGTACW	1 cut(s)	984
TfiI	GAWTC	3 cut(s)	265, 1361, 1475
Tru1I	TTAA	5 cut(s)	213, 537, 663, 1047, 1224
Tru9I	TTAA	5 cut(s)	213, 537, 663, 1047, 1224
TscAI	CASTG	4 cut(s)	402, 687, 1167, 1450
TseI	GCWGC	1 cut(s)	1310
TspDTI	ATGAA	3 cut(s)	278, 1107, 1503
TspRI	CASTG	4 cut(s)	402, 687, 1167, 1450
Vha464I	CTTAAG	1 cut(s)	1046
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	3 cut(s)	526, 932, 1088
XspI	CTAG	5 cut(s)	243, 318, 408, 546, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.