Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1860014 .. 1875752

Gene Structure 15739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1017100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGTCGCGCTGCTTTCCATTTCCTCCACCGGGATATGAAAAAAAGGCTAGGACAGATGATGTGGACTTGCTGAAAAAGGAGAAACACAGAGAAAAGAAGCATAAAAAGGAAAAGAAGGACAAAGAGAAGAGAGAGAGTACAGACAAAAGTGATGGAAAGCATCGGGAAAAGAAGGACAAGAAGGAAAAAAAGAGAGACAAAAAGAAGGATAAGGAGAAGGATAGGGACTTGGTTAAAGACAAAATTAGTACTTCAGATGAGAAGAGAGTTCCAGGAAAAACAGAGGGTCATGGCGAAGAGAGATGCATTCAGAAAGAGTACAAGGGCAACTGTTTTGACAAGAGATATGCAGGGCAAATTGGAGGTCATCAGGCAGAGAAACTCACTCAGTACCGTCATCTGGCTGAGCAAAACCAGAATTCTGTATTGGTGGAGTTGGGTAGGAGGAGTAAAGATGAGGCCAGGGCATTTGGTAACTATCTGGCTGAGAAGATTACTGAATCAGACCGAAAGAGGGATGACATTTTGGCCGAAATTAAGGAAAAGAACAAGGACAGGAGAGTTGATGACAGAAGGACAGATGGGCAAGGTGTCAGGGGTGCAGCACAGGTTAGTGGGAACACGATGGTTCAGAATCTTGTTGGTATGGTTGAACCCAAAGTTGAAGGACTTTCCAGACCATTGGCAAGCAATGTGGACAGAAAGATTGACGGAAAAGAAAAGGCCAAAGAGAAGGAAGGTGATGATAAACGAGGTGAAAAACGCAAGGACAAAGATAGAGAGAAGAAAAAACAAGGGAAAGACAAGGACAAAGATAAACAGAAGAAAAAGGAAGCGAAAGCAAAAGAGAAAATTGAATCTAAGAATGGAGAGCCAGATAAAGAGAAGAAAAAGGAAGAGAAAACAAAGGAGAAAAATGAAACTAAGAATGCAGAGCCAGATAAATTAAGAAAGAGCGATAAAGAGGATCACATAGATTCCCATAGCGTTGTAACCTCCCAACTTCTGAAGGACAGCAACAAAAGTGCTGGCAGTGATGGAAATCTGAAGAAAAGAAGGGACATACAGACGAATGGAGTTGTGCATGCCAATGATATTAGGCCCAGTAAACTGTCGAGGCCTTCCTCTTCCTCTCATTCATTGCCTGTAAATGGAAGCACACTGGAACCTTCCCAAACTTCCATCCCATATGTGTCAGATAGGCTGGGTGCGGCAAATAACCTTAAGGTGGACGTTAAGGACTGCAAGATAAATGGCATTGTTGAAGCTCCGTCATTGGCTGTCTCCACTGCAAAGCCGACATCTACAGCTACACAGGCTGTTCCTGTTGCTGAAGCATGCATGAGACCACCCCATCCGGATTCCAGATATCTAAGCCATGTTTATATGGTTCCGAAATTGGACGAAGTGCCTGATCATGACGATCAAGATTGGTTGTTTGGGTGCAGTGATGCCCAATCAAAGAGACCCCTGGTGGAATCTTCACGGGTTGCAGAGACACCTGAGGTATGGTCAGAGGTTCTACGGATAGAGTCAGCTGATGTTCATGCCCTGCCGTATGTCATTCCATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

525

Amino Acids

59.45

Weight (kDa)

9.36

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	1357
AciI	CCGC	1 cut(s)	1211
AclWI	GGATC	1 cut(s)	975
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	4 cut(s)	237, 1028, 1067, 1353
AfaI	GTAC	4 cut(s)	139, 250, 320, 392
AfiI	CCNNNNNNNGG	5 cut(s)	29, 400, 514, 1151, 1228
AflII	CTTAAG	1 cut(s)	1223
AgsI	TTSAA	4 cut(s)	653, 665, 857, 1265
AjnI	CCWGG	3 cut(s)	271, 461, 1470
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	3 cut(s)	1268, 1310, 1538
AluI	AGCT	3 cut(s)	1268, 1310, 1538
Alw26I	GTCTC	5 cut(s)	189, 1288, 1339, 1459, 1490
AlwI	GGATC	1 cut(s)	975
Aor13HI	TCCGGA	1 cut(s)	1357
AoxI	GGCC	5 cut(s)	459, 528, 723, 1100, 1118
ApeKI	GCWGC	2 cut(s)	9, 602
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	1101
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	752, 767
AxyI	CCTNAGG	1 cut(s)	1503
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	6 cut(s)	146, 575, 619, 1031, 1190, 1362
BceAI	ACGGC	1 cut(s)	1540
BciT130I	CCWGG	3 cut(s)	273, 463, 1472
BclI	TGATCA	1 cut(s)	1414
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	5 cut(s)	189, 1288, 1339, 1459, 1490
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	1305
BfrI	CTTAAG	1 cut(s)	1223
BisI	GCNGC	3 cut(s)	10, 603, 1212
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	3 cut(s)	11, 604, 1213
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	4 cut(s)	30, 273, 463, 1472
BmgT120I	GGNCC	1 cut(s)	1101
BmiI	GGNNCC	2 cut(s)	1167, 1392
BmrFI	CCNGG	4 cut(s)	30, 273, 463, 1472
BmrI	ACTGGG	1 cut(s)	1098
BmsI	GCATC	3 cut(s)	169, 293, 1441
BmuI	ACTGGG	1 cut(s)	1098
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaI	GGTCTC	2 cut(s)	1339, 1459
BsaJI	CCNNGG	2 cut(s)	462, 1470
BsaWI	WCCGGW	1 cut(s)	1357
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 400, 514, 1151, 1228
Bse1I	ACTGG	2 cut(s)	1104, 1167
Bse21I	CCTNAGG	1 cut(s)	1503
Bse3DI	GCAATG	2 cut(s)	697, 1139
Bse8I	GATNNNNATC	1 cut(s)	1041
BseAI	TCCGGA	1 cut(s)	1357
BseBI	CCWGG	3 cut(s)	273, 463, 1472
BseDI	CCNNGG	2 cut(s)	462, 1470
BseGI	GGATG	3 cut(s)	523, 1182, 1354
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	5 cut(s)	29, 400, 514, 1151, 1228
BseMI	GCAATG	2 cut(s)	697, 1139
BseMII	CTCAG	4 cut(s)	396, 401, 477, 1494
BseNI	ACTGG	2 cut(s)	1104, 1167
BseRI	GAGGAG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	614
BseYI	CCCAGC	1 cut(s)	1204
BsgI	GTGCAG	2 cut(s)	621, 1465
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	5 cut(s)	461, 530, 725, 1102, 1120
BsiSI	CCGG	2 cut(s)	29, 1358
BslFI	GGGAC	2 cut(s)	239, 1073
BslI	CCNNNNNNNGG	5 cut(s)	29, 400, 514, 1151, 1228
BsmAI	GTCTC	5 cut(s)	189, 1288, 1339, 1459, 1490
BsmFI	GGGAC	2 cut(s)	239, 1073
BsmI	GAATGC	2 cut(s)	306, 934
BsnI	GGCC	5 cut(s)	461, 530, 725, 1102, 1120
Bso31I	GGTCTC	2 cut(s)	1339, 1459
Bsp13I	TCCGGA	1 cut(s)	1357
Bsp143I	GATC	3 cut(s)	967, 1414, 1423
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	1211
BspANI	GGCC	5 cut(s)	461, 530, 725, 1102, 1120
BspCNI	CTCAG	4 cut(s)	397, 400, 478, 1495
BspEI	TCCGGA	1 cut(s)	1357
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	1417
BspLI	GGNNCC	2 cut(s)	1167, 1392
BspPI	GGATC	1 cut(s)	975
BspTI	CTTAAG	1 cut(s)	1223
BspTNI	GGTCTC	2 cut(s)	1339, 1459
BsrDI	GCAATG	2 cut(s)	697, 1139
BsrI	ACTGG	2 cut(s)	1104, 1167
BssECI	CCNNGG	2 cut(s)	462, 1470
BssMI	GATC	3 cut(s)	967, 1414, 1423
Bst2UI	CCWGG	3 cut(s)	273, 463, 1472
Bst4CI	ACNGT	3 cut(s)	332, 395, 1113
Bst6I	CTCTTC	5 cut(s)	122, 257, 291, 891, 1132
BstAFI	CTTAAG	1 cut(s)	1223
BstC8I	GCNNGC	4 cut(s)	688, 1030, 1086, 1339
BstDEI	CTNAG	7 cut(s)	387, 405, 486, 861, 924, 1373, 1503
BstF5I	GGATG	3 cut(s)	523, 1182, 1354
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	970, 1417, 1426
BstMAI	GTCTC	5 cut(s)	189, 1288, 1339, 1459, 1490
BstMBI	GATC	3 cut(s)	967, 1414, 1423
BstMWI	GCNNNNNNNGC	1 cut(s)	1316
BstNI	CCWGG	3 cut(s)	273, 463, 1472
BstNSI	RCATGY	2 cut(s)	1088, 1341
BstSCI	CCNGG	4 cut(s)	28, 271, 461, 1470
BstSFI	CTRYAG	1 cut(s)	1305
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	682
Bsu36I	CCTNAGG	1 cut(s)	1503
BsuRI	GGCC	5 cut(s)	461, 530, 725, 1102, 1120
BtsCI	GGATG	3 cut(s)	523, 1182, 1354
BtsI	GCAGTG	3 cut(s)	1039, 1287, 1453
BtsIMutI	CAGTG	4 cut(s)	1039, 1160, 1287, 1453
Cac8I	GCNNGC	4 cut(s)	688, 1030, 1086, 1339
CciI	TCATGA	1 cut(s)	1417
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	1101
Csp6I	GTAC	4 cut(s)	138, 249, 319, 391
CspCI	CAANNNNNGTGG	2 cut(s)	675, 710
CviAII	CATG	7 cut(s)	290, 1085, 1338, 1342, 1379, 1418, 1547
CviQI	GTAC	4 cut(s)	138, 249, 319, 391
DdeI	CTNAG	7 cut(s)	387, 405, 486, 861, 924, 1373, 1503
DpnI	GATC	3 cut(s)	969, 1416, 1425
DpnII	GATC	3 cut(s)	967, 1414, 1423
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	5 cut(s)	122, 257, 291, 891, 1132
EarI	CTCTTC	5 cut(s)	122, 257, 291, 891, 1132
Eco147I	AGGCCT	1 cut(s)	1120
Eco31I	GGTCTC	2 cut(s)	1339, 1459
Eco32I	GATATC	1 cut(s)	1370
Eco57I	CTGAAG	4 cut(s)	237, 1028, 1067, 1353
Eco81I	CCTNAGG	1 cut(s)	1503
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	271, 461, 1470
EcoRV	GATATC	1 cut(s)	1370
EcoT22I	ATGCAT	2 cut(s)	308, 1343
FaeI	CATG	7 cut(s)	293, 1088, 1341, 1345, 1382, 1421, 1550
FaqI	GGGAC	2 cut(s)	239, 1073
FatI	CATG	7 cut(s)	289, 1084, 1337, 1341, 1378, 1417, 1546
FauNDI	CATATG	1 cut(s)	1189
FbaI	TGATCA	1 cut(s)	1414
Fnu4HI	GCNGC	3 cut(s)	10, 603, 1212
FokI	GGATG	3 cut(s)	530, 1169, 1341
Fsp4HI	GCNGC	3 cut(s)	10, 603, 1212
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	10, 603, 1212
GsaI	CCCAGC	1 cut(s)	1208
HaeIII	GGCC	5 cut(s)	461, 530, 725, 1102, 1120
HapII	CCGG	2 cut(s)	29, 1358
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	7 cut(s)	293, 1088, 1341, 1345, 1382, 1421, 1550
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	7 cut(s)	500, 634, 857, 977, 1361, 1478, 1532
HpaII	CCGG	2 cut(s)	29, 1358
HphI	GGTGA	2 cut(s)	752, 767
Hpy166II	GTNNAC	4 cut(s)	64, 697, 1109, 1231
Hpy188I	TCNGA	9 cut(s)	256, 312, 505, 633, 1008, 1047, 1198, 1395, 1516
Hpy188III	TCNNGA	6 cut(s)	164, 675, 1358, 1365, 1418, 1427
Hpy8I	GTNNAC	4 cut(s)	64, 697, 1109, 1231
HpyCH4III	ACNGT	3 cut(s)	332, 395, 1113
HpyCH4IV	ACGT	1 cut(s)	1233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1316
HpyF3I	CTNAG	7 cut(s)	387, 405, 486, 861, 924, 1373, 1503
HpySE526I	ACGT	1 cut(s)	1233
Hsp92II	CATG	7 cut(s)	293, 1088, 1341, 1345, 1382, 1421, 1550
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	1357
Ksp22I	TGATCA	1 cut(s)	1414
Kzo9I	GATC	3 cut(s)	967, 1414, 1423
LmnI	GCTCC	1 cut(s)	1273
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	3 cut(s)	169, 293, 1441
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	1233
MaeIII	GTNAC	2 cut(s)	473, 991
MalI	GATC	3 cut(s)	969, 1416, 1425
MboI	GATC	3 cut(s)	967, 1414, 1423
MluCI	AATT	7 cut(s)	243, 357, 418, 534, 852, 944, 1397
MlyI	GAGTC	1 cut(s)	1541
Mph1103I	ATGCAT	2 cut(s)	308, 1343
MroI	TCCGGA	1 cut(s)	1357
MseI	TTAA	5 cut(s)	234, 537, 947, 1224, 1236
MslI	CAYNNNNRTG	1 cut(s)	1089
MspA1I	CMGCKG	1 cut(s)	1538
MspCI	CTTAAG	1 cut(s)	1223
MspI	CCGG	2 cut(s)	29, 1358
MspR9I	CCNGG	4 cut(s)	30, 273, 463, 1472
Mva1269I	GAATGC	2 cut(s)	306, 934
MvaI	CCWGG	3 cut(s)	273, 463, 1472
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	1316
NciI	CCSGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	1189
NdeII	GATC	3 cut(s)	967, 1414, 1423
NlaIII	CATG	7 cut(s)	293, 1088, 1341, 1345, 1382, 1421, 1550
NlaIV	GGNNCC	2 cut(s)	1167, 1392
NsiI	ATGCAT	2 cut(s)	308, 1343
NspI	RCATGY	2 cut(s)	1088, 1341
PaeI	GCATGC	2 cut(s)	1088, 1341
PagI	TCATGA	1 cut(s)	1417
PceI	AGGCCT	1 cut(s)	1120
PctI	GAATGC	2 cut(s)	306, 934
PfeI	GAWTC	6 cut(s)	500, 634, 857, 977, 1361, 1478
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	11, 604, 1213
PleI	GAGTC	1 cut(s)	1540
PpsI	GAGTC	1 cut(s)	1540
Psp6I	CCWGG	3 cut(s)	271, 461, 1470
PspFI	CCCAGC	1 cut(s)	1204
PspGI	CCWGG	3 cut(s)	271, 461, 1470
PspN4I	GGNNCC	2 cut(s)	1167, 1392
PspPI	GGNCC	1 cut(s)	1101
PvuII	CAGCTG	1 cut(s)	1538
RsaI	GTAC	4 cut(s)	139, 250, 320, 392
RsaNI	GTAC	4 cut(s)	138, 249, 319, 391
RseI	CAYNNNNRTG	1 cut(s)	1089
SaqAI	TTAA	5 cut(s)	234, 537, 947, 1224, 1236
SatI	GCNGC	3 cut(s)	10, 603, 1212
Sau3AI	GATC	3 cut(s)	967, 1414, 1423
Sau96I	GGNCC	1 cut(s)	1101
ScaI	AGTACT	1 cut(s)	250
SchI	GAGTC	1 cut(s)	1541
ScrFI	CCNGG	4 cut(s)	30, 273, 463, 1472
SfaNI	GCATC	3 cut(s)	169, 293, 1441
SfcI	CTRYAG	1 cut(s)	1305
SmiMI	CAYNNNNRTG	1 cut(s)	1089
SmlI	CTYRAG	1 cut(s)	1223
SmoI	CTYRAG	1 cut(s)	1223
SphI	GCATGC	2 cut(s)	1088, 1341
Sse9I	AATT	7 cut(s)	243, 357, 418, 534, 852, 944, 1397
SseBI	AGGCCT	1 cut(s)	1120
SsiI	CCGC	1 cut(s)	1211
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	1120
StyD4I	CCNGG	4 cut(s)	28, 271, 461, 1470
TaaI	ACNGT	3 cut(s)	332, 395, 1113
TaiI	ACGT	1 cut(s)	1236
TaqI	TCGA	1 cut(s)	1115
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	7 cut(s)	243, 357, 418, 534, 852, 944, 1397
TatI	WGTACW	3 cut(s)	137, 248, 318
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	6 cut(s)	500, 634, 857, 977, 1361, 1478
Tru1I	TTAA	5 cut(s)	234, 537, 947, 1224, 1236
Tru9I	TTAA	5 cut(s)	234, 537, 947, 1224, 1236
TscAI	CASTG	4 cut(s)	1039, 1167, 1294, 1453
TseI	GCWGC	2 cut(s)	9, 602
TspDTI	ATGAA	4 cut(s)	51, 933, 1128, 1535
TspGWI	ACGGA	3 cut(s)	726, 1260, 1540
TspRI	CASTG	4 cut(s)	1039, 1167, 1294, 1453
Vha464I	CTTAAG	1 cut(s)	1223
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	2 cut(s)	1088, 1341
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	250
Zsp2I	ATGCAT	2 cut(s)	308, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.