Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1850470 .. 1856271

Gene Structure 5802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1017000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGTCGCGCTGCTTTCCATTTCCTCCACCTGGATATGAAAAAAAGACTAGGACAGATGATGTTGACTTGCTGAAAAAGATTGCCTTTGAGAAACACAGAGAAAAGAAGCATAAAAAGGAAAAGAAGGACAAAGAGAAGAGAGAGAGTAAAGATAAAAGTGAAGGAAAGCATCGGGAAAAGAAAGACAAGAAGGAAAAAAAGAAAGACAAAAAGAAGGATAAGGAGAAAGATAGGGACCTGGTTAAAGACAAAACAAGTACTTCAGACGAGAAGAGAGTTCCAGGAAAGACCGAGGGTCATGGTGAAGAGAGATACATTCAGAAAGAGTACAAGGGCAACTGTATTGACAAGAGATATACGGGGCAAATTGGAGGTCATCAGGCAGAGAAACTCAGTCAGTACTGTCATCCGGCTGAGCAAAACCAGAATTCTGTATTGGTGGAGTTGGGTAGGAGGAGTAAAGATGAGGCCAGGGCAATCAGTAACCATCTGGTTGGGAAGATTACTGAATCAGACCGAAAGAAGGATGAGGGGATGGTCAGATTGCTGGCCGAGGGTACTGACATTTTGGCCGAAGTTAAGGAAAAGAACAAGGACAGGAGAGTTGATGACAGAAGGACATATGGGCAAGGAGTCAGGGGTGCAGCACAGATTAGTGGGAACACGATGGTTCAGAACCTTGTTGGTGTCGTTGAACCTAAAGTTGAAGGACTTTCCAGACCATTGGCAAGCAACATGGATAGAGATATTGATGGAAAAGAAAAGGCCAAAGAGAAGGAAGGTGATGATAAACGAGGAGAAAAACGCAAGGAAAAAGATAGAGAGAAGAAAAAACAAGGGAGAGACAAGGACAAAGTTAAAGAGAAGAAAAAGGAAGCGAAAGCAAAGGAGAAAAATGAATCCAAGAATGGAGAGCCAGACAAAGAGGAGAAAAAGGAAGAGAAAGCAAAGGAGAAAAATGAAACTAAGAATGCAAAGCCTGATAAATTAAGAAAGAGCGATAAAGAGGATCACATAGATTCCCATAGTGTCAAAACCTCCCAACTTTCGAAGGACAGCAACAAAAGTGCTGGTGCTGATGGAAATCTGAAGAAAAGAAAGGACATACAGACGAATGGAATTGTGCATGCCAATGATATTAGGCCCAGTAAACTGTTGAGACCTTCCTCTTCCTCTCATTCATTGCCTGTAAATGGGAGAACACTGGAATCTTGCCAAACTTCCATCCCATATGTTTCAGATACGCTGGGTGCTGCAAATAACGTTAAGGTGGACATTAAGGACTGCAAGATAAATGGCATTGTTGAAGCTCCGTCATTGGCTGTCTCCACTGCAAAGCCGACATCTACAGCTACACAGGTTGTTCCTGTTGCTGAAGCATGCATGAGACCACCCCATCCGGATTCCAGATATCTAAGCCATGTTTATTTGGTTCCGAAGTTGGACGAAGTGCCGGATCATGACGATCAAGATTGGTTGTTTGGGTGCAGTGATGCCCAATCAAAGAAACCCAAGGCGGAATCTTCAGGGTTTGAGGAGACACCTGAGGTATGGTCAGAGGTTCTGCGGATAGAGTCGGCTGATATTCATGCCCTGCCGTATGTCATTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

539

Amino Acids

60.88

Weight (kDa)

9.28

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43490 AT5G48610 AT5G48610 AT5G48610 AT5G48610 AT5G48610
fragaria_vesca	FvH4_4g13340 FvH4_4g13340
malus_domestica	MD04G1017000.v1.1 MD04G1017100.v1.1 MD13G1282000.v1.1
prunus_persica	Prupe.1G164200_v2.0.a1 Prupe.1G164200_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1 Prupe.8G196300_v2.0.a1
pyrus_communis	pycom04g01310 pycom420g01020
rosa_chinensis	RchiOBHm_Chr4g0413691
rosa_laevigata	RLG00000008201
rosa_multiflora	Rmu_co8069900.1_g000001 Rmu_sc0004133.1_g000009 Rmu_sc0033890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357630
rosa_rugosa	Rorug04G0122400 Rorug04G0122500 Rorug04G0122600
rosa_samantha	Rh4AG181700 Rh4BG180900 Rh4CG192900 Rh4DG177200
rosa_wichuraiana	Rw4G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	1399
AciI	CCGC	2 cut(s)	1517, 1567
AclI	AACGTT	1 cut(s)	1263
AclWI	GGATC	2 cut(s)	1017, 1464
AcoI	YGGCCR	2 cut(s)	549, 570
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	4 cut(s)	246, 1109, 1395, 1509
AfaI	GTAC	4 cut(s)	259, 329, 401, 559
AfiI	CCNNNNNNNGG	3 cut(s)	29, 523, 1193
AgsI	TTSAA	3 cut(s)	695, 707, 1307
AhdI	GACNNNNNGTC	1 cut(s)	294
AjnI	CCWGG	4 cut(s)	28, 237, 280, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	2 cut(s)	1310, 1352
AluI	AGCT	2 cut(s)	1310, 1352
Alw26I	GTCTC	5 cut(s)	837, 1153, 1330, 1381, 1532
AlwI	GGATC	2 cut(s)	1017, 1464
Aor13HI	TCCGGA	1 cut(s)	1399
AoxI	GGCC	5 cut(s)	468, 549, 570, 765, 1142
ApeKI	GCWGC	3 cut(s)	9, 644, 1253
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	235, 1143
AsuHPI	GGTGA	2 cut(s)	314, 794
AsuII	TTCGAA	1 cut(s)	1049
AvaII	GGWCC	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	1545
BbvI	GCAGC	2 cut(s)	656, 1240
BccI	CCATC	7 cut(s)	495, 529, 661, 746, 1073, 1232, 1404
BceAI	ACGGC	1 cut(s)	1582
BciT130I	CCWGG	4 cut(s)	30, 239, 282, 472
BcoDI	GTCTC	5 cut(s)	837, 1153, 1330, 1381, 1532
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	1347
BisI	GCNGC	3 cut(s)	10, 645, 1254
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	11, 646, 1255
BmcAI	AGTACT	2 cut(s)	259, 401
Bme1390I	CCNGG	4 cut(s)	30, 239, 282, 472
Bme18I	GGWCC	1 cut(s)	235
BmeRI	GACNNNNNGTC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	235, 1143
BmiI	GGNNCC	2 cut(s)	236, 1434
BmrFI	CCNGG	4 cut(s)	30, 239, 282, 472
BmrI	ACTGGG	1 cut(s)	1140
BmsI	GCATC	2 cut(s)	178, 1483
BmuI	ACTGGG	1 cut(s)	1140
Bpu1102I	GCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	1049
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaI	GGTCTC	2 cut(s)	1153, 1381
BsaJI	CCNNGG	4 cut(s)	291, 471, 552, 1512
BsaWI	WCCGGW	1 cut(s)	1399
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 523, 1193
Bse1I	ACTGG	2 cut(s)	1146, 1209
Bse21I	CCTNAGG	1 cut(s)	1545
Bse3DI	GCAATG	1 cut(s)	1181
Bse8I	GATNNNNATC	1 cut(s)	1083
BseAI	TCCGGA	1 cut(s)	1399
BseBI	CCWGG	4 cut(s)	30, 239, 282, 472
BseDI	CCNNGG	4 cut(s)	291, 471, 552, 1512
BseGI	GGATG	5 cut(s)	406, 532, 540, 1224, 1396
BseJI	GATNNNNATC	1 cut(s)	1083
BseLI	CCNNNNNNNGG	3 cut(s)	29, 523, 1193
BseMI	GCAATG	1 cut(s)	1181
BseMII	CTCAG	3 cut(s)	405, 406, 1536
BseNI	ACTGG	2 cut(s)	1146, 1209
BseRI	GAGGAG	4 cut(s)	469, 810, 941, 1550
BseXI	GCAGC	2 cut(s)	656, 1240
BseYI	CCCAGC	1 cut(s)	1246
BsgI	GTGCAG	2 cut(s)	663, 1507
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	5 cut(s)	470, 551, 572, 767, 1144
BsiSI	CCGG	3 cut(s)	410, 1400, 1454
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	29, 523, 1193
BsmAI	GTCTC	5 cut(s)	837, 1153, 1330, 1381, 1532
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	5 cut(s)	470, 551, 572, 767, 1144
Bso31I	GGTCTC	2 cut(s)	1153, 1381
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp13I	TCCGGA	1 cut(s)	1399
Bsp143I	GATC	3 cut(s)	1009, 1456, 1465
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	1517, 1567
BspANI	GGCC	5 cut(s)	470, 551, 572, 767, 1144
BspCNI	CTCAG	3 cut(s)	405, 406, 1537
BspEI	TCCGGA	1 cut(s)	1399
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	1459
BspLI	GGNNCC	2 cut(s)	236, 1434
BspPI	GGATC	2 cut(s)	1017, 1464
BspT104I	TTCGAA	1 cut(s)	1049
BspTNI	GGTCTC	2 cut(s)	1153, 1381
BsrDI	GCAATG	1 cut(s)	1181
BsrI	ACTGG	2 cut(s)	1146, 1209
BssECI	CCNNGG	4 cut(s)	291, 471, 552, 1512
BssMI	GATC	3 cut(s)	1009, 1456, 1465
BssT1I	CCWWGG	1 cut(s)	1512
Bst2UI	CCWGG	4 cut(s)	30, 239, 282, 472
Bst4CI	ACNGT	3 cut(s)	341, 404, 1155
Bst6I	CTCTTC	5 cut(s)	131, 266, 300, 933, 1174
BstBI	TTCGAA	1 cut(s)	1049
BstC8I	GCNNGC	4 cut(s)	549, 730, 1128, 1381
BstDEI	CTNAG	5 cut(s)	392, 414, 966, 1415, 1545
BstF5I	GGATG	5 cut(s)	406, 532, 540, 1224, 1396
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	1012, 1459, 1468
BstMAI	GTCTC	5 cut(s)	837, 1153, 1330, 1381, 1532
BstMBI	GATC	3 cut(s)	1009, 1456, 1465
BstNI	CCWGG	4 cut(s)	30, 239, 282, 472
BstNSI	RCATGY	2 cut(s)	1130, 1383
BstSCI	CCNGG	4 cut(s)	28, 237, 280, 470
BstSFI	CTRYAG	1 cut(s)	1347
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	656, 1240
BstXI	CCANNNNNNTGG	2 cut(s)	494, 724
Bsu36I	CCTNAGG	1 cut(s)	1545
BsuRI	GGCC	5 cut(s)	470, 551, 572, 767, 1144
BtsCI	GGATG	5 cut(s)	406, 532, 540, 1224, 1396
BtsI	GCAGTG	2 cut(s)	1329, 1495
BtsIMutI	CAGTG	3 cut(s)	1202, 1329, 1495
Cac8I	GCNNGC	4 cut(s)	549, 730, 1128, 1381
CciI	TCATGA	1 cut(s)	1459
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	235, 1143
CsiI	ACCWGGT	1 cut(s)	237
Csp6I	GTAC	4 cut(s)	258, 328, 400, 558
CviAII	CATG	8 cut(s)	299, 736, 1127, 1380, 1384, 1421, 1460, 1589
CviQI	GTAC	4 cut(s)	258, 328, 400, 558
DdeI	CTNAG	5 cut(s)	392, 414, 966, 1415, 1545
DpnI	GATC	3 cut(s)	1011, 1458, 1467
DpnII	GATC	3 cut(s)	1009, 1456, 1465
DriI	GACNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	2 cut(s)	549, 570
Eam1104I	CTCTTC	5 cut(s)	131, 266, 300, 933, 1174
Eam1105I	GACNNNNNGTC	1 cut(s)	294
EarI	CTCTTC	5 cut(s)	131, 266, 300, 933, 1174
EciI	GGCGGA	1 cut(s)	1532
Eco130I	CCWWGG	1 cut(s)	1512
Eco31I	GGTCTC	2 cut(s)	1153, 1381
Eco32I	GATATC	1 cut(s)	1412
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	4 cut(s)	246, 1109, 1395, 1509
Eco81I	CCTNAGG	1 cut(s)	1545
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	28, 237, 280, 470
EcoRV	GATATC	1 cut(s)	1412
EcoT14I	CCWWGG	1 cut(s)	1512
EcoT22I	ATGCAT	1 cut(s)	1385
ErhI	CCWWGG	1 cut(s)	1512
FaeI	CATG	8 cut(s)	302, 739, 1130, 1383, 1387, 1424, 1463, 1592
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	8 cut(s)	298, 735, 1126, 1379, 1383, 1420, 1459, 1588
FauNDI	CATATG	2 cut(s)	622, 1231
Fnu4HI	GCNGC	3 cut(s)	10, 645, 1254
FokI	GGATG	5 cut(s)	393, 539, 547, 1211, 1383
Fsp4HI	GCNGC	3 cut(s)	10, 645, 1254
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	10, 645, 1254
GsaI	CCCAGC	1 cut(s)	1250
HaeIII	GGCC	5 cut(s)	470, 551, 572, 767, 1144
HapII	CCGG	3 cut(s)	410, 1400, 1454
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	8 cut(s)	302, 739, 1130, 1383, 1387, 1424, 1463, 1592
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	8 cut(s)	509, 633, 899, 1019, 1208, 1403, 1520, 1574
HpaII	CCGG	3 cut(s)	410, 1400, 1454
HphI	GGTGA	2 cut(s)	314, 794
Hpy166II	GTNNAC	3 cut(s)	64, 1151, 1273
Hpy188I	TCNGA	9 cut(s)	265, 321, 514, 542, 675, 1089, 1240, 1437, 1558
Hpy188III	TCNNGA	6 cut(s)	173, 717, 1400, 1407, 1460, 1469
Hpy8I	GTNNAC	3 cut(s)	64, 1151, 1273
HpyCH4III	ACNGT	3 cut(s)	341, 404, 1155
HpyCH4IV	ACGT	1 cut(s)	1263
HpyCH4V	TGCA	8 cut(s)	644, 974, 1126, 1256, 1287, 1334, 1383, 1488
HpyF3I	CTNAG	5 cut(s)	392, 414, 966, 1415, 1545
HpySE526I	ACGT	1 cut(s)	1263
Hsp92II	CATG	8 cut(s)	302, 739, 1130, 1383, 1387, 1424, 1463, 1592
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	1399
Kzo9I	GATC	3 cut(s)	1009, 1456, 1465
LmnI	GCTCC	1 cut(s)	1315
Lsp1109I	GCAGC	2 cut(s)	656, 1240
LweI	GCATC	2 cut(s)	178, 1483
MabI	ACCWGGT	1 cut(s)	237
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	1263
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	3 cut(s)	1011, 1458, 1467
MboI	GATC	3 cut(s)	1009, 1456, 1465
MluCI	AATT	4 cut(s)	366, 427, 986, 1119
MlyI	GAGTC	2 cut(s)	642, 1583
MmeI	TCCRAC	1 cut(s)	1422
Mph1103I	ATGCAT	1 cut(s)	1385
MroI	TCCGGA	1 cut(s)	1399
MseI	TTAA	6 cut(s)	243, 579, 858, 989, 1266, 1278
MslI	CAYNNNNRTG	1 cut(s)	1131
MspI	CCGG	3 cut(s)	410, 1400, 1454
MspR9I	CCNGG	4 cut(s)	30, 239, 282, 472
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	4 cut(s)	30, 239, 282, 472
MvnI	CGCG	1 cut(s)	7
NdeI	CATATG	2 cut(s)	622, 1231
NdeII	GATC	3 cut(s)	1009, 1456, 1465
NlaIII	CATG	8 cut(s)	302, 739, 1130, 1383, 1387, 1424, 1463, 1592
NlaIV	GGNNCC	2 cut(s)	236, 1434
NmeAIII	GCCGAG	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	1385
NspI	RCATGY	2 cut(s)	1130, 1383
NspV	TTCGAA	1 cut(s)	1049
PaeI	GCATGC	2 cut(s)	1130, 1383
PagI	TCATGA	1 cut(s)	1459
PctI	GAATGC	1 cut(s)	976
PfeI	GAWTC	6 cut(s)	509, 899, 1019, 1208, 1403, 1520
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	11, 646, 1255
PleI	GAGTC	2 cut(s)	641, 1582
PpsI	GAGTC	2 cut(s)	641, 1582
PpuMI	RGGWCCY	1 cut(s)	235
Psp1406I	AACGTT	1 cut(s)	1263
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	4 cut(s)	28, 237, 280, 470
PspFI	CCCAGC	1 cut(s)	1246
PspGI	CCWGG	4 cut(s)	28, 237, 280, 470
PspN4I	GGNNCC	2 cut(s)	236, 1434
PspPI	GGNCC	2 cut(s)	235, 1143
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	4 cut(s)	259, 329, 401, 559
RsaNI	GTAC	4 cut(s)	258, 328, 400, 558
RseI	CAYNNNNRTG	1 cut(s)	1131
SaqAI	TTAA	6 cut(s)	243, 579, 858, 989, 1266, 1278
SatI	GCNGC	3 cut(s)	10, 645, 1254
Sau3AI	GATC	3 cut(s)	1009, 1456, 1465
Sau96I	GGNCC	2 cut(s)	235, 1143
ScaI	AGTACT	2 cut(s)	259, 401
SchI	GAGTC	2 cut(s)	642, 1583
ScrFI	CCNGG	4 cut(s)	30, 239, 282, 472
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	178, 1483
SfcI	CTRYAG	1 cut(s)	1347
SfuI	TTCGAA	1 cut(s)	1049
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	1131
SphI	GCATGC	2 cut(s)	1130, 1383
Sse9I	AATT	4 cut(s)	366, 427, 986, 1119
SsiI	CCGC	2 cut(s)	1517, 1567
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	28, 237, 280, 470
StyI	CCWWGG	1 cut(s)	1512
TaaI	ACNGT	3 cut(s)	341, 404, 1155
TaiI	ACGT	1 cut(s)	1266
TaqI	TCGA	1 cut(s)	1049
TaqII	GACCGA	2 cut(s)	305, 531
TasI	AATT	4 cut(s)	366, 427, 986, 1119
TatI	WGTACW	3 cut(s)	257, 327, 399
TfiI	GAWTC	6 cut(s)	509, 899, 1019, 1208, 1403, 1520
Tru1I	TTAA	6 cut(s)	243, 579, 858, 989, 1266, 1278
Tru9I	TTAA	6 cut(s)	243, 579, 858, 989, 1266, 1278
TscAI	CASTG	3 cut(s)	1209, 1336, 1495
TseI	GCWGC	3 cut(s)	9, 644, 1253
TspDTI	ATGAA	5 cut(s)	51, 912, 975, 1170, 1577
TspGWI	ACGGA	1 cut(s)	1302
TspRI	CASTG	3 cut(s)	1209, 1336, 1495
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	2 cut(s)	1130, 1383
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	2 cut(s)	259, 401
Zsp2I	ATGCAT	1 cut(s)	1385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.