Rorug04G0122500
MYB Family

Myb-like protein X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003553
Physical Location & Seq
Forward (+)
19374395 .. 19375687
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0122500.1

Sequence Viewer

Length: 1182 bp
ATGGCCTCTATTGATGCTGTCACAGCAAGTTTTGCTGCTTCTCTGGCTCTTGCTACGGGTGGTAACGCTCCGGATCTGGGCAAGATCGGTGGTGGCCCGGTGCGCAAGTCATCTCAATCCTTTCTACTTGGCAAACAATTGACCCGCAAACCAGTGGATCCCAAAGCTTTCAAGGCTTTTTTCCATCGCACCTGGATGGTGGAAAAGGATTTTAGGGTTCAGGAAAAGGCTGGAGATGTTTTCCTGTTCTCCTTTGAATCGATTCGTGATCGCAACAAGATACTCCGGGGAGGGGCTTGGTCCTTTGATCGTGCTCCTGTGTGCTTTGAAGAATATGATGGCGTCAAGCCTTTGCATGAAGTCCAGTTCAAGCATCTCCGAGTGTGGGTTAGGGTTTCAGGGATTCCTCCCCTGTATGAAGAACCTGAGAATTTTACCCTTATTGGCAATCTCTTAGCCTATGACAAGAAGGAGTTTAAGAAGGGTGGGATTCTGATTTTCTTTATCCATGATATCTCCAAACCGTTCTTACTTGAGCGGAAAGTTTTCTTGGATGTCGGCGTTGAACCGGTGCTGCACTTCCAGTTTGAGCATCTGAAAGGGAGGTGTTCACAGTGTGGACTCGTCACGCATGCTGGGATTCCCTGTGAGGAGCCAAATACGTTAATTTCGAAACCTAGGGTTTTGAACTTTCCAGGCCCGGCAACCTCAGGCGGTTTGTTCTCCTTCTCGGCTCAGAACAAACACGAGTCCTTCCCGGTGGTCTCGTCTATTCCTAAGCAGAAGAAGAAGCCCACTATTCGTCGCTTTGAGCGCCCAAATTCCCCATCTTCTTCTCTTTCGGAGTCGCCTACGGGTTCAGACCCGGATGCTAATGGTGTTGTGCAACCAGTTTCGAAGAAACGGGATCGGATTGGTGCCTGCGACCCTTCTCCAAAGAAGTTCAAGACCATTTTAGGTGGTAAAATCCCAACTCTGCAGGCTGATGCTTTGGGACTGATTGAGGATGACAATGATACTCCTCTTGTCACTCTAAAGAAGAAGCTGGGTAGGCCGCTTGGCAGCAAGAATAGGAGCAAACGTTCTAATCTAAAGTTGGGACCTGCCCCTCTGCAACTCACCTACTCGGCAGTAGGTCCTGCTGATCCTAGCCCTAAAGATAAGGGCAAAGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.14

Weight (kDa)

9.74

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 112 5.3e-07 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 171 - 216 2.4e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 1111
AccB1I GGYRCC 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 538
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 4 cut(s) 145, 538, 714, 1055
AclI AACGTT 1 cut(s) 1081
AclWI GGATC 5 cut(s) 81, 152, 165, 915, 1139
AcsI RAATTY 2 cut(s) 430, 820
AcyI GRCGYC 1 cut(s) 342
AdeI CACNNNGTG 1 cut(s) 617
AfiI CCNNNNNNNGG 3 cut(s) 77, 292, 385
AgeI ACCGGT 1 cut(s) 568
AgsI TTSAA 7 cut(s) 172, 257, 329, 370, 566, 688, 946
AjnI CCWGG 2 cut(s) 191, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AloI GAACNNNNNNTCC 2 cut(s) 1066, 1098
AluBI AGCT 3 cut(s) 167, 1045, 1177
AluI AGCT 3 cut(s) 167, 1045, 1177
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 769
AlwI GGATC 5 cut(s) 81, 152, 165, 915, 1139
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 4 cut(s) 3, 94, 697, 1052
ApeKI GCWGC 3 cut(s) 35, 574, 1062
ApoI RAATTY 2 cut(s) 430, 820
AsiGI ACCGGT 1 cut(s) 568
Asp700I GAANNNNTTC 2 cut(s) 261, 545
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 2 cut(s) 105, 816
AspS9I GGNCC 5 cut(s) 95, 300, 698, 1100, 1136
AsuC2I CCSGG 5 cut(s) 98, 287, 701, 758, 866
AsuHPI GGTGA 1 cut(s) 1111
AsuII TTCGAA 2 cut(s) 671, 896
AvaII GGWCC 3 cut(s) 300, 1100, 1136
AvrII CCTAGG 1 cut(s) 677
AxyI CCTNAGG 1 cut(s) 709
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 917
BauI CACGAG 1 cut(s) 746
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 22, 561, 1074
BccI CCATC 4 cut(s) 190, 192, 332, 835
BciT130I CCWGG 2 cut(s) 193, 696
BcnI CCSGG 5 cut(s) 98, 287, 701, 758, 866
BcoDI GTCTC 1 cut(s) 769
BfaI CTAG 2 cut(s) 678, 1149
BfmI CTRYAG 1 cut(s) 977
BfoI RGCGCY 1 cut(s) 817
BfuAI ACCTGC 1 cut(s) 1111
BisI GCNGC 4 cut(s) 36, 575, 1055, 1063
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 4 cut(s) 37, 576, 1056, 1064
Bme1390I CCNGG 7 cut(s) 98, 193, 287, 696, 701, 758, 866
Bme18I GGWCC 3 cut(s) 300, 1100, 1136
BmgT120I GGNCC 5 cut(s) 95, 300, 698, 1100, 1136
BmiI GGNNCC 4 cut(s) 159, 654, 919, 1101
BmrFI CCNGG 7 cut(s) 98, 193, 287, 696, 701, 758, 866
BmsI GCATC 5 cut(s) 4, 382, 601, 859, 976
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 777
Bpu14I TTCGAA 2 cut(s) 671, 896
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 5 cut(s) 98, 287, 701, 758, 866
Bsa29I ATCGAT 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 286, 677
BsaWI WCCGGW 2 cut(s) 70, 568
BsaXI ACNNNNNCTCC 2 cut(s) 1066, 1096
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 292, 385
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 4 cut(s) 152, 364, 583, 890
Bse21I CCTNAGG 1 cut(s) 709
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 2 cut(s) 193, 696
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 286, 677
BseGI GGATG 4 cut(s) 201, 559, 874, 1012
BseLI CCNNNNNNNGG 3 cut(s) 77, 292, 385
BseMII CTCAG 3 cut(s) 417, 723, 749
BseNI ACTGG 4 cut(s) 152, 364, 583, 890
BseRI GAGGAG 2 cut(s) 665, 1011
BseXI GCAGC 3 cut(s) 22, 561, 1074
BseYI CCCAGC 2 cut(s) 635, 1045
BsgI GTGCAG 1 cut(s) 560
BshFI GGCC 4 cut(s) 5, 96, 699, 1054
BshNI GGYRCC 1 cut(s) 917
BshTI ACCGGT 1 cut(s) 568
BshVI ATCGAT 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 7 cut(s) 71, 98, 286, 569, 701, 758, 866
BslFI GGGAC 2 cut(s) 1008, 1113
BslI CCNNNNNNNGG 3 cut(s) 77, 292, 385
BsmAI GTCTC 1 cut(s) 769
BsmFI GGGAC 2 cut(s) 1008, 1113
BsnI GGCC 4 cut(s) 5, 96, 699, 1054
Bso31I GGTCTC 1 cut(s) 769
Bsp119I TTCGAA 2 cut(s) 671, 896
Bsp1286I GDGCHC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
BspACI CCGC 4 cut(s) 145, 538, 714, 1055
BspANI GGCC 4 cut(s) 5, 96, 699, 1054
BspCNI CTCAG 3 cut(s) 418, 722, 748
BspDI ATCGAT 1 cut(s) 260
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 159, 654, 919, 1101
BspMAI CTGCAG 1 cut(s) 981
BspMI ACCTGC 1 cut(s) 1111
BspPI GGATC 5 cut(s) 81, 152, 165, 915, 1139
BspT104I TTCGAA 2 cut(s) 671, 896
BspT107I GGYRCC 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 769
BsrBI CCGCTC 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 4 cut(s) 152, 364, 583, 890
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 286, 677
BssMI GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
BssNI GRCGYC 1 cut(s) 342
BssSI CACGAG 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 677
Bst2BI CACGAG 1 cut(s) 746
Bst2UI CCWGG 2 cut(s) 193, 696
Bst4CI ACNGT 2 cut(s) 525, 615
BstACI GRCGYC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBI TTCGAA 2 cut(s) 671, 896
BstC8I GCNNGC 3 cut(s) 633, 922, 981
BstDEI CTNAG 5 cut(s) 426, 454, 709, 735, 777
BstF5I GGATG 4 cut(s) 201, 559, 874, 1012
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 2 cut(s) 105, 816
BstKTI GATC 7 cut(s) 76, 87, 160, 271, 310, 910, 1147
BstMAI GTCTC 1 cut(s) 769
BstMBI GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 44, 102, 173, 813, 1051
BstNI CCWGG 2 cut(s) 193, 696
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 7 cut(s) 96, 191, 285, 694, 699, 756, 864
BstSFI CTRYAG 1 cut(s) 977
BstV1I GCAGC 3 cut(s) 22, 561, 1074
BstX2I RGATCY 2 cut(s) 73, 157
BstYI RGATCY 2 cut(s) 73, 157
Bsu15I ATCGAT 1 cut(s) 260
Bsu36I CCTNAGG 1 cut(s) 709
BsuRI GGCC 4 cut(s) 5, 96, 699, 1054
BsuTUI ATCGAT 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 4 cut(s) 201, 559, 874, 1012
BtsIMutI CAGTG 2 cut(s) 159, 620
BveI ACCTGC 1 cut(s) 1111
Cac8I GCNNGC 3 cut(s) 633, 922, 981
CfoI GCGC 2 cut(s) 105, 816
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 5 cut(s) 95, 300, 698, 1100, 1136
ClaI ATCGAT 1 cut(s) 260
CseI GACGC 1 cut(s) 331
CspAI ACCGGT 1 cut(s) 568
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 3 cut(s) 356, 509, 632
DdeI CTNAG 5 cut(s) 426, 454, 709, 735, 777
DpnI GATC 7 cut(s) 75, 86, 159, 270, 309, 909, 1146
DpnII GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
DraIII CACNNNGTG 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 677
Eco31I GGTCTC 1 cut(s) 769
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 3 cut(s) 300, 1100, 1136
Eco81I CCTNAGG 1 cut(s) 709
EcoO109I RGGNCCY 2 cut(s) 1100, 1136
EcoRII CCWGG 2 cut(s) 191, 694
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 677
ErhI CCWWGG 1 cut(s) 677
FaeI CATG 3 cut(s) 359, 512, 635
FaiI YATR 6 cut(s) 336, 357, 417, 462, 510, 633
FalI AAGNNNNNCTT 1 cut(s) 1161
FaqI GGGAC 2 cut(s) 1008, 1113
FatI CATG 3 cut(s) 355, 508, 631
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 4 cut(s) 36, 575, 1055, 1063
FokI GGATG 4 cut(s) 208, 566, 881, 1019
Fsp4HI GCNGC 4 cut(s) 36, 575, 1055, 1063
FspBI CTAG 2 cut(s) 678, 1149
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 2 cut(s) 104, 815
GluI GCNGC 4 cut(s) 36, 575, 1055, 1063
GsaI CCCAGC 2 cut(s) 639, 1049
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 817
HaeIII GGCC 4 cut(s) 5, 96, 699, 1054
HapII CCGG 7 cut(s) 71, 98, 286, 569, 701, 758, 866
HgaI GACGC 1 cut(s) 331
HhaI GCGC 2 cut(s) 105, 816
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 3 cut(s) 359, 512, 635
Hin6I GCGC 2 cut(s) 103, 814
HinP1I GCGC 2 cut(s) 103, 814
HindIII AAGCTT 2 cut(s) 165, 1175
HinfI GANTC 8 cut(s) 257, 262, 403, 490, 621, 640, 749, 845
HpaII CCGG 7 cut(s) 71, 98, 286, 569, 701, 758, 866
HphI GGTGA 1 cut(s) 1111
Hpy166II GTNNAC 2 cut(s) 611, 620
Hpy188I TCNGA 7 cut(s) 380, 495, 597, 738, 844, 862, 912
Hpy188III TCNNGA 4 cut(s) 71, 221, 266, 946
Hpy8I GTNNAC 2 cut(s) 611, 620
Hpy99I CGWCG 1 cut(s) 807
HpyAV CCTTC 5 cut(s) 463, 475, 736, 763, 939
HpyCH4III ACNGT 2 cut(s) 525, 615
HpyCH4IV ACGT 2 cut(s) 662, 1081
HpyCH4V TGCA 5 cut(s) 355, 577, 886, 979, 1114
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 44, 102, 173, 813, 1051
HpyF3I CTNAG 5 cut(s) 426, 454, 709, 735, 777
HpySE526I ACGT 2 cut(s) 662, 1081
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 3 cut(s) 359, 512, 635
HspAI GCGC 2 cut(s) 103, 814
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
LmnI GCTCC 4 cut(s) 73, 319, 652, 1074
Lsp1109I GCAGC 3 cut(s) 22, 561, 1074
LweI GCATC 5 cut(s) 4, 382, 601, 859, 976
MaeI CTAG 2 cut(s) 678, 1149
MaeII ACGT 2 cut(s) 662, 1081
MaeIII GTNAC 4 cut(s) 19, 62, 625, 1027
MalI GATC 7 cut(s) 75, 86, 159, 270, 309, 909, 1146
MbiI CCGCTC 1 cut(s) 538
MboI GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
MboII GAAGA 8 cut(s) 341, 431, 796, 799, 822, 825, 910, 1051
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 2 cut(s) 73, 157
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 4 cut(s) 137, 430, 666, 820
MlyI GAGTC 3 cut(s) 615, 758, 854
MnlI CCTC 9 cut(s) 16, 284, 417, 597, 643, 718, 997, 1032, 1119
MroI TCCGGA 1 cut(s) 70
MroXI GAANNNNTTC 2 cut(s) 261, 545
MseI TTAA 2 cut(s) 477, 665
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 7 cut(s) 71, 98, 286, 569, 701, 758, 866
MspR9I CCNGG 7 cut(s) 98, 193, 287, 696, 701, 758, 866
MunI CAATTG 1 cut(s) 137
MvaI CCWGG 2 cut(s) 193, 696
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 44, 102, 173, 813, 1051
NciI CCSGG 5 cut(s) 98, 287, 701, 758, 866
NdeII GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
NlaIII CATG 3 cut(s) 359, 512, 635
NlaIV GGNNCC 4 cut(s) 159, 654, 919, 1101
NmeAIII GCCGAG 2 cut(s) 710, 1106
NmuCI GTSAC 3 cut(s) 19, 625, 1027
NsbI TGCGCA 1 cut(s) 104
NspI RCATGY 1 cut(s) 635
NspV TTCGAA 2 cut(s) 671, 896
PaeI GCATGC 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PdmI GAANNNNTTC 2 cut(s) 261, 545
PfeI GAWTC 5 cut(s) 257, 262, 403, 490, 640
PinAI ACCGGT 1 cut(s) 568
PkrI GCNGC 4 cut(s) 37, 576, 1056, 1064
PleI GAGTC 3 cut(s) 615, 757, 853
PpsI GAGTC 3 cut(s) 615, 757, 853
PpuMI RGGWCCY 2 cut(s) 1100, 1136
Psp1406I AACGTT 1 cut(s) 1081
Psp5II RGGWCCY 2 cut(s) 1100, 1136
Psp6I CCWGG 2 cut(s) 191, 694
PspFI CCCAGC 2 cut(s) 635, 1045
PspGI CCWGG 2 cut(s) 191, 694
PspN4I GGNNCC 4 cut(s) 159, 654, 919, 1101
PspPI GGNCC 5 cut(s) 95, 300, 698, 1100, 1136
PspPPI RGGWCCY 2 cut(s) 1100, 1136
PstI CTGCAG 1 cut(s) 981
PsuI RGATCY 2 cut(s) 73, 157
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 477, 665
SatI GCNGC 4 cut(s) 36, 575, 1055, 1063
Sau3AI GATC 7 cut(s) 73, 84, 157, 268, 307, 907, 1144
Sau96I GGNCC 5 cut(s) 95, 300, 698, 1100, 1136
SchI GAGTC 3 cut(s) 615, 758, 854
ScrFI CCNGG 7 cut(s) 98, 193, 287, 696, 701, 758, 866
SduI GDGCHC 1 cut(s) 316
SfaNI GCATC 5 cut(s) 4, 382, 601, 859, 976
SfcI CTRYAG 1 cut(s) 977
SfuI TTCGAA 2 cut(s) 671, 896
SinI GGWCC 3 cut(s) 300, 1100, 1136
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 635
Sse9I AATT 4 cut(s) 137, 430, 666, 820
SsiI CCGC 4 cut(s) 145, 538, 714, 1055
SspMI CTAG 2 cut(s) 678, 1149
StyD4I CCNGG 7 cut(s) 96, 191, 285, 694, 699, 756, 864
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 2 cut(s) 525, 615
TaiI ACGT 2 cut(s) 665, 1084
TaqI TCGA 3 cut(s) 260, 671, 896
TasI AATT 4 cut(s) 137, 430, 666, 820
TauI GCSGC 1 cut(s) 1057
TfiI GAWTC 5 cut(s) 257, 262, 403, 490, 640
Tru1I TTAA 2 cut(s) 477, 665
Tru9I TTAA 2 cut(s) 477, 665
TscAI CASTG 2 cut(s) 159, 620
TseFI GTSAC 3 cut(s) 19, 625, 1027
TseI GCWGC 3 cut(s) 35, 574, 1062
Tsp45I GTSAC 3 cut(s) 19, 625, 1027
TspDTI ATGAA 2 cut(s) 372, 432
TspRI CASTG 2 cut(s) 159, 620
VpaK11BI GGWCC 3 cut(s) 300, 1100, 1136
XapI RAATTY 2 cut(s) 430, 820
XceI RCATGY 1 cut(s) 635
XmaJI CCTAGG 1 cut(s) 677
XmnI GAANNNNTTC 2 cut(s) 261, 545
XspI CTAG 2 cut(s) 678, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.