AT5G50920

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004579
Physical Location & Seq
Reverse (-)
20715453 .. 20720681
5229 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50920.1

Sequence Viewer

Length: 2790 bp
ATGGCTATGGCCACAAGGGTGTTGGCTCAATCGACTCCACCGTCTTTAGCTTGTTACCAGAGGAATGTTCCTTCACGTGGATCTGGAAGATCGAGAAGATCGGTGAAAATGATGTGTAGTCAGTTACAAGTGTCTGGTTTAAGAATGCAAGGGTTTATGGGATTACGTGGTAACAATGCTTTAGACACTCTTGGAAAAAGTCGTCAAGATTTTCATTCGAAGGTGCGACAGGCAATGAATGTGCCCAAGGGGAAAGCTAGCCGGTTTACGGTGAAAGCAATGTTTGAAAGATTTACGGAGAAAGCTATCAAAGTTATTATGCTTGCTCAGGAGGAAGCTAGAAGACTAGGCCACAATTTTGTGGGAACCGAACAAATTCTTCTTGGTCTTATTGGTGAGGGTACTGGAATCGCTGCTAAAGTTTTGAAATCCATGGGGATTAACTTAAAAGATGCACGTGTGGAGGTTGAGAAGATTATTGGAAGGGGAAGTGGCTTTGTTGCTGTTGAGATCCCATTCACTCCTCGTGCCAAGCGTGTTCTTGAACTCTCTCTTGAGGAAGCTCGCCAACTTGGTCACAATTACATTGGATCCGAGCACCTTTTGCTTGGGTTGCTACGTGAAGGTGAAGGAGTTGCAGCTCGAGTCCTTGAGAATTTAGGTGCAGATCCTAGTAATATTCGCACTCAGGTGATACGCATGGTGGGTGAGAACAATGAAGTAACTGCTAATGTTGGGGGAGGAAGCAGCAGCAATAAGATGCCAACTCTTGAAGAGTACGGAACAAACTTGACGAAACTGGCTGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCGCAGATAGAACGTGTGGTGCAAATTCTTGGCAGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTTGGTAAGACAGCTATTGCTGAAGGACTTGCACAGCGTATTGCCAGTGGCGATGTCCCTGAAACTATTGAAGGGAAGAAGGTTATAACACTCGACATGGGTCTTCTAGTTGCTGGAACAAAATATCGTGGAGAGTTTGAAGAGAGATTGAAAAAGCTTATGGAGGAAATTAGACAGAGCGATGAGATAATCTTATTTATCGACGAAGTGCATACTTTGATTGGGGCTGGAGCAGCAGAAGGTGCAATTGACGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCATTGGAGCGACAACATTAGATGAATACCGAAAGCACATTGAGAAAGACCCTGCCTTGGAAAGAAGATTCCAGCCAGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATCCTTAAGGGTCTGCGAGAGCGATATGAAATTCACCACAAGCTTCGTTACACAGACGAATCTTTAGTAGCAGCTGCACAGTTGTCATACCAGTATATAAGTGATCGTTTCCTTCCTGACAAGGCAATTGACTTGATTGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTGAGGAAGCTAGGGAGCTTGAGAAGGAGCTTAGGCAGATAACAAAGGAGAAGAATGAAGCTGTCCGTGGCCAGGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTCAGAGCTGAGGTATCTGCAATCCAAGCGAAAGGCAAGGAGATGAGCAAAGCAGAGAGTGAGACCGGTGAGGAAGGCCCTATGGTCACGGAGTCAGACATCCAACACATTGTGTCTTCATGGACTGGTATTCCTGTTGAGAAAGTATCAACCGATGAGTCTGACCGTCTCCTCAAGATGGAAGAAACCCTCCACAAACGTATCATAGGCCAAGACGAAGCTGTGAAAGCCATAAGCCGAGCCATTCGCCGTGCACGTGTTGGACTCAAGAATCCTAACCGTCCAATCGCTAGTTTCATATTCTCGGGTCCAACCGGTGTTGGGAAATCTGAGCTTGCCAAAGCTTTAGCAGCTTACTACTTCGGTTCCGAAGAAGCCATGATTCGTCTAGATATGAGTGAGTTCATGGAGAGGCACACTGTCTCCAAACTCATCGGTTCACCTCCTGGATATGTCGGATACACCGAAGGAGGTCAGTTAACAGAAGCGGTTAGACGTCGCCCTTACACCGTCGTTCTATTCGATGAGATTGAAAAAGCCCATCCAGATGTTTTCAACATGATGCTTCAAATCCTTGAAGATGGTAGATTAACAGACAGCAAAGGAAGAACAGTTGACTTCAAAAACACACTTCTCATCATGACATCAAACGTCGGAAGCAGCGTGATTGAGAAAGGAGGAAGACGTATCGGATTCGACTTAGACTACGACGAGAAAGACAGCAGTTACAACAGAATCAAGAGCCTTGTAACAGAGGAGCTGAAACAATACTTCAGACCCGAGTTCCTAAACAGGCTAGACGAGATGATTGTGTTCAGACAGCTAACAAAGCTGGAAGTGAAAGAAATTGCTGACATACTGTTGAAGGAAGTGTTCGAGAGGTTGAAGAAGAAAGAGATTGAGCTTCAGGTGACCGAAAGATTCAAAGAGAGAGTAGTAGACGAAGGTTATAACCCGAGCTATGGAGCAAGACCGTTGAGAAGAGCCATCATGAGGCTTTTAGAGGATAGTATGGCAGAGAAGATGCTTGCGAGAGAGATCAAAGAAGGAGACTCGGTGATTGTGGACGTTGACGCTGAAGGTAACGTCACGGTGCTAAATGGTGGAAGTGGCACTCCAACTACTTCCTTGGAGGAGCAGGAAGATTCTCTCCCTGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009719 GO:0009725 GO:0009735 GO:0009889 GO:0009941 GO:0009987 GO:0010033 GO:0010380 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019222 GO:0019538 GO:0019866 GO:0022607 GO:0030312 GO:0031090 GO:0031323 GO:0031326 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034214 GO:0034357 GO:0034613 GO:0042170 GO:0042221 GO:0042623 GO:0042651 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051259 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065003 GO:0065007 GO:0070011 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0090056 GO:0098796 GO:0140096 GO:1901401 GO:1901463 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko01100 map01100
Pfam Domains
Protein Families
AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

929

Amino Acids

103.45

Weight (kDa)

6.36

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 97 - 219 1.4e-36 Clp repeat (R) N-terminal domain
Clp_N PF02861 173 - 243 7.2e-17 Clp repeat (R) N-terminal domain
AAA PF00004 299 - 411 8.8e-14 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 438 - 538 1.7e-34 AAA lid domain
UVR PF02151 511 - 545 5.1e-07 UvrB/uvrC motif
AAA_2 PF07724 636 - 810 9.9e-69 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 641 - 762 1.1e-11 AAA domain (dynein-related subfamily)
AAA PF00004 642 - 761 3.3e-07 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 817 - 897 4.6e-24 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1001, 2577
AasI GACNNNNNNGTC 1 cut(s) 40
AatII GACGTC 1 cut(s) 2125
AccB7I CCANNNNNTGG 1 cut(s) 830
AccI GTMKAC 1 cut(s) 2565
AciI CCGC 2 cut(s) 842, 2114
AclWI GGATC 6 cut(s) 88, 505, 585, 598, 662, 1324
AcoI YGGCCR 2 cut(s) 9, 1579
AcsI RAATTY 4 cut(s) 375, 655, 864, 1359
AcuI CTGAAG 4 cut(s) 957, 2383, 2516, 2724
AcvI CACGTG 3 cut(s) 77, 458, 1883
AcyI GRCGYC 1 cut(s) 2122
AdeI CACNNNGTG 1 cut(s) 1738
AfaI GTAC 3 cut(s) 403, 779, 1299
AflII CTTAAG 1 cut(s) 1334
AflIII ACRYGT 3 cut(s) 457, 853, 1882
AgeI ACCGGT 2 cut(s) 1691, 1940
AjnI CCWGG 3 cut(s) 910, 1581, 2071
AjuI GAANNNNNNNTTGG 2 cut(s) 900, 932
AleI CACNNNNGTG 2 cut(s) 17, 689
Alw21I GWGCWC 2 cut(s) 600, 1882
Alw26I GTCTC 4 cut(s) 1682, 1799, 2053, 2670
Alw44I GTGCAC 1 cut(s) 1878
AlwI GGATC 6 cut(s) 88, 505, 585, 598, 662, 1324
Ama87I CYCGRG 5 cut(s) 642, 1482, 1930, 2405, 2581
AoxI GGCC 5 cut(s) 9, 349, 1579, 1702, 1834
ApaLI GTGCAC 1 cut(s) 1878
ApoI RAATTY 4 cut(s) 375, 655, 864, 1359
AsiGI ACCGGT 2 cut(s) 1691, 1940
Asp700I GAANNNNTTC 2 cut(s) 375, 1323
AspS9I GGNCC 4 cut(s) 820, 1507, 1703, 1934
AsuII TTCGAA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 257
AvaI CYCGRG 5 cut(s) 642, 1482, 1930, 2405, 2581
AvaII GGWCC 3 cut(s) 820, 1507, 1934
AxyI CCTNAGG 1 cut(s) 1512
BaeGI GKGCMC 2 cut(s) 246, 1882
BaeI ACNNNNGTAYC 2 cut(s) 1810, 1843
BalI TGGCCA 2 cut(s) 11, 1581
BamHI GGATCC 1 cut(s) 590
BauI CACGAG 1 cut(s) 525
BbrPI CACGTG 3 cut(s) 77, 458, 1883
BbsI GAAGAC 4 cut(s) 349, 1010, 1734, 2314
Bbv12I GWGCWC 2 cut(s) 600, 1882
BbvCI CCTCAGC 2 cut(s) 804, 1635
BccI CCATC 4 cut(s) 1798, 2175, 2201, 2621
BceAI ACGGC 1 cut(s) 1860
BciT130I CCWGG 3 cut(s) 912, 1583, 2073
BciVI GTATCC 1 cut(s) 2078
BcoDI GTCTC 4 cut(s) 1682, 1799, 2053, 2670
BfrI CTTAAG 1 cut(s) 1334
BfuI GTATCC 1 cut(s) 2078
Bme1390I CCNGG 3 cut(s) 912, 1583, 2073
Bme18I GGWCC 3 cut(s) 820, 1507, 1934
BmeT110I CYCGRG 5 cut(s) 642, 1482, 1930, 2405, 2581
BmgT120I GGNCC 4 cut(s) 820, 1507, 1703, 1934
BmiI GGNNCC 6 cut(s) 367, 592, 822, 1509, 1935, 1993
BmrFI CCNGG 3 cut(s) 912, 1583, 2073
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 4 cut(s) 442, 750, 2178, 2640
BmtI GCTAGC 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 818
BoxI GACNNNNGTC 1 cut(s) 1014
BpiI GAAGAC 4 cut(s) 349, 1010, 1734, 2314
BpmI CTGGAG 1 cut(s) 1164
Bpu10I CCTNAGC 4 cut(s) 327, 804, 1541, 1635
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 5 cut(s) 575, 671, 1550, 1784, 1877
BsaAI YACGTR 5 cut(s) 77, 167, 458, 620, 1883
BsaHI GRCGYC 1 cut(s) 2122
BsaI GGTCTC 1 cut(s) 1682
BsaJI CCNNGG 6 cut(s) 246, 432, 1269, 1311, 1576, 2754
BsaWI WCCGGW 2 cut(s) 1691, 1940
BsaXI ACNNNNNCTCC 4 cut(s) 2033, 2063, 2667, 2697
Bse118I RCCGGY 3 cut(s) 261, 1691, 1940
Bse1I ACTGG 7 cut(s) 409, 804, 824, 960, 1289, 1420, 1756
Bse21I CCTNAGG 1 cut(s) 1512
Bse3DI GCAATG 2 cut(s) 240, 285
BseBI CCWGG 3 cut(s) 912, 1583, 2073
BseDI CCNNGG 6 cut(s) 246, 432, 1269, 1311, 1576, 2754
BseGI GGATG 3 cut(s) 1321, 1725, 2167
BseMI GCAATG 2 cut(s) 240, 285
BseMII CTCAG 7 cut(s) 341, 701, 795, 1503, 1626, 1642, 1947
BseNI ACTGG 7 cut(s) 409, 804, 824, 960, 1289, 1420, 1756
BseRI GAGGAG 5 cut(s) 513, 821, 1787, 2396, 2774
BseSI GKGCMC 2 cut(s) 246, 1882
BseYI CCCAGC 1 cut(s) 1598
BsgI GTGCAG 2 cut(s) 684, 1389
BshFI GGCC 5 cut(s) 11, 351, 1581, 1704, 1836
BshTI ACCGGT 2 cut(s) 1691, 1940
BsiHKAI GWGCWC 2 cut(s) 600, 1882
BsiHKCI CYCGRG 5 cut(s) 642, 1482, 1930, 2405, 2581
BsiSI CCGG 3 cut(s) 262, 1692, 1941
BslFI GGGAC 3 cut(s) 956, 1493, 1615
BsmAI GTCTC 4 cut(s) 1682, 1799, 2053, 2670
BsmBI CGTCTC 1 cut(s) 1799
BsmFI GGGAC 3 cut(s) 956, 1493, 1615
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 5 cut(s) 11, 351, 1581, 1704, 1836
Bso31I GGTCTC 1 cut(s) 1682
BsoBI CYCGRG 5 cut(s) 642, 1482, 1930, 2405, 2581
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 246, 600, 1882
Bsp143I GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 2 cut(s) 842, 2114
BspANI GGCC 5 cut(s) 11, 351, 1581, 1704, 1836
BspCNI CTCAG 7 cut(s) 340, 700, 796, 1504, 1627, 1641, 1948
BspHI TCATGA 2 cut(s) 2265, 2616
BspLI GGNNCC 6 cut(s) 367, 592, 822, 1509, 1935, 1993
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 6 cut(s) 88, 505, 585, 598, 662, 1324
BspQI GCTCTTC 1 cut(s) 2602
BspT104I TTCGAA 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 1334
BspTNI GGTCTC 1 cut(s) 1682
BsrDI GCAATG 2 cut(s) 240, 285
BsrFI RCCGGY 3 cut(s) 261, 1691, 1940
BsrI ACTGG 7 cut(s) 409, 804, 824, 960, 1289, 1420, 1756
BssAI RCCGGY 3 cut(s) 261, 1691, 1940
BssECI CCNNGG 6 cut(s) 246, 432, 1269, 1311, 1576, 2754
BssMI GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
BssNI GRCGYC 1 cut(s) 2122
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 4 cut(s) 246, 432, 1269, 2754
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 3 cut(s) 912, 1583, 2073
Bst6I CTCTTC 3 cut(s) 768, 1050, 2602
BstACI GRCGYC 1 cut(s) 2122
BstAFI CTTAAG 1 cut(s) 1334
BstAPI GCANNNNNTGC 2 cut(s) 604, 1157
BstBAI YACGTR 5 cut(s) 77, 167, 458, 620, 1883
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 5 cut(s) 259, 324, 565, 1962, 2655
BstDEI CTNAG 9 cut(s) 327, 687, 804, 1512, 1541, 1628, 1635, 1956, 2326
BstDSI CCRYGG 3 cut(s) 432, 1311, 1576
BstEII GGTNACC 1 cut(s) 2536
BstF5I GGATG 3 cut(s) 1321, 1725, 2167
BstKTI GATC 9 cut(s) 83, 92, 101, 513, 593, 670, 1332, 1435, 2667
BstMAI GTCTC 4 cut(s) 1682, 1799, 2053, 2670
BstMBI GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
BstMWI GCNNNNNNNGC 9 cut(s) 604, 613, 1148, 1157, 1166, 1652, 1853, 1976, 2455
BstNI CCWGG 3 cut(s) 912, 1583, 2073
BstPAI GACNNNNGTC 1 cut(s) 1014
BstPI GGTNACC 1 cut(s) 2536
BstSCI CCNGG 3 cut(s) 910, 1581, 2071
BstSLI GKGCMC 2 cut(s) 246, 1882
BstV2I GAAGAC 4 cut(s) 349, 1010, 1734, 2314
BstX2I RGATCY 5 cut(s) 80, 510, 590, 667, 1329
BstYI RGATCY 5 cut(s) 80, 510, 590, 667, 1329
Bsu36I CCTNAGG 1 cut(s) 1512
BsuI GTATCC 1 cut(s) 2078
BsuRI GGCC 5 cut(s) 11, 351, 1581, 1704, 1836
BtgI CCRYGG 3 cut(s) 432, 1311, 1576
BtgZI GCGATG 2 cut(s) 981, 1110
BtsCI GGATG 3 cut(s) 1321, 1725, 2167
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 4 cut(s) 967, 1217, 1296, 2043
Cac8I GCNNGC 5 cut(s) 259, 324, 565, 1962, 2655
CciI TCATGA 2 cut(s) 2265, 2616
Cfr10I RCCGGY 3 cut(s) 261, 1691, 1940
Cfr13I GGNCC 4 cut(s) 820, 1507, 1703, 1934
CseI GACGC 2 cut(s) 1175, 2708
CsiI ACCWGGT 1 cut(s) 910
Csp6I GTAC 3 cut(s) 402, 778, 1298
CspAI ACCGGT 2 cut(s) 1691, 1940
CviQI GTAC 3 cut(s) 402, 778, 1298
DdeI CTNAG 9 cut(s) 327, 687, 804, 1512, 1541, 1628, 1635, 1956, 2326
DpnI GATC 9 cut(s) 82, 91, 100, 512, 592, 669, 1331, 1434, 2666
DpnII GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
DraI TTTAAA 1 cut(s) 1182
DraIII CACNNNGTG 1 cut(s) 1738
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 9, 1579
Eam1104I CTCTTC 3 cut(s) 768, 1050, 2602
EarI CTCTTC 3 cut(s) 768, 1050, 2602
Eco130I CCWWGG 4 cut(s) 246, 432, 1269, 2754
Eco31I GGTCTC 1 cut(s) 1682
Eco47I GGWCC 3 cut(s) 820, 1507, 1934
Eco57I CTGAAG 4 cut(s) 957, 2383, 2516, 2724
Eco72I CACGTG 3 cut(s) 77, 458, 1883
Eco81I CCTNAGG 1 cut(s) 1512
Eco88I CYCGRG 5 cut(s) 642, 1482, 1930, 2405, 2581
Eco91I GGTNACC 1 cut(s) 2536
EcoO109I RGGNCCY 2 cut(s) 1507, 1703
EcoO65I GGTNACC 1 cut(s) 2536
EcoRII CCWGG 3 cut(s) 910, 1581, 2071
EcoT14I CCWWGG 4 cut(s) 246, 432, 1269, 2754
ErhI CCWWGG 4 cut(s) 246, 432, 1269, 2754
Esp3I CGTCTC 1 cut(s) 1799
FaqI GGGAC 3 cut(s) 956, 1493, 1615
FblI GTMKAC 1 cut(s) 2565
FokI GGATG 3 cut(s) 1328, 1712, 2154
GsaI CCCAGC 1 cut(s) 1602
GsuI CTGGAG 1 cut(s) 1164
HaeIII GGCC 5 cut(s) 11, 351, 1581, 1704, 1836
HapII CCGG 3 cut(s) 262, 1692, 1941
HgaI GACGC 2 cut(s) 1175, 2708
Hin1I GRCGYC 1 cut(s) 2122
HincII GTYRAC 3 cut(s) 2106, 2242, 2698
HindII GTYRAC 3 cut(s) 2106, 2242, 2698
HindIII AAGCTT 3 cut(s) 1070, 1370, 1968
HpaI GTTAAC 1 cut(s) 2106
HpaII CCGG 3 cut(s) 262, 1692, 1941
Hpy166II GTNNAC 8 cut(s) 267, 1880, 2066, 2106, 2242, 2566, 2692, 2698
Hpy8I GTNNAC 8 cut(s) 267, 1880, 2066, 2106, 2242, 2566, 2692, 2698
Hpy99I CGWCG 5 cut(s) 1121, 2127, 2141, 2282, 2339
HpyF10VI GCNNNNNNNGC 9 cut(s) 604, 613, 1148, 1157, 1166, 1652, 1853, 1976, 2455
HpyF3I CTNAG 9 cut(s) 327, 687, 804, 1512, 1541, 1628, 1635, 1956, 2326
Hsp92I GRCGYC 1 cut(s) 2122
KspAI GTTAAC 1 cut(s) 2106
Kzo9I GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
LguI GCTCTTC 1 cut(s) 2602
LmnI GCTCC 7 cut(s) 1145, 1220, 1525, 1537, 2383, 2591, 2761
LweI GCATC 4 cut(s) 442, 750, 2178, 2640
MabI ACCWGGT 1 cut(s) 910
MalI GATC 9 cut(s) 82, 91, 100, 512, 592, 669, 1331, 1434, 2666
MboI GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
MfeI CAATTG 2 cut(s) 1161, 1455
MflI RGATCY 5 cut(s) 80, 510, 590, 667, 1329
MhlI GDGCHC 3 cut(s) 246, 600, 1882
MlsI TGGCCA 2 cut(s) 11, 1581
MluNI TGGCCA 2 cut(s) 11, 1581
MlyI GAGTC 6 cut(s) 28, 654, 1727, 1793, 1884, 2672
MmeI TCCRAC 7 cut(s) 811, 1753, 1867, 1961, 2062, 2260, 2768
Mox20I TGGCCA 2 cut(s) 11, 1581
MroXI GAANNNNTTC 2 cut(s) 375, 1323
MscI TGGCCA 2 cut(s) 11, 1581
MseI TTAA 8 cut(s) 140, 441, 446, 1181, 1335, 2105, 2216, 2788
MslI CAYNNNNRTG 3 cut(s) 17, 689, 2172
Msp20I TGGCCA 2 cut(s) 11, 1581
MspA1I CMGCKG 1 cut(s) 1403
MspCI CTTAAG 1 cut(s) 1334
MspI CCGG 3 cut(s) 262, 1692, 1941
MspR9I CCNGG 3 cut(s) 912, 1583, 2073
MunI CAATTG 2 cut(s) 1161, 1455
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 3 cut(s) 912, 1583, 2073
MwoI GCNNNNNNNGC 9 cut(s) 604, 613, 1148, 1157, 1166, 1652, 1853, 1976, 2455
NcoI CCATGG 1 cut(s) 432
NdeII GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
NheI GCTAGC 1 cut(s) 257
NlaIV GGNNCC 6 cut(s) 367, 592, 822, 1509, 1935, 1993
NmeAIII GCCGAG 1 cut(s) 1889
NmuCI GTSAC 4 cut(s) 575, 1711, 2536, 2713
NspV TTCGAA 1 cut(s) 218
OliI CACNNNNGTG 2 cut(s) 17, 689
PaeR7I CTCGAG 1 cut(s) 642
PagI TCATGA 2 cut(s) 2265, 2616
PciSI GCTCTTC 1 cut(s) 2602
PcsI WCGNNNNNNNCGW 6 cut(s) 38, 532, 1879, 2088, 2145, 2286
PctI GAATGC 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 375, 1323
PfeI GAWTC 9 cut(s) 408, 1281, 1388, 1897, 2008, 2319, 2361, 2547, 2771
PflFI GACNNNGTC 1 cut(s) 1494
PflMI CCANNNNNTGG 1 cut(s) 830
PfoI TCCNGGA 1 cut(s) 2071
PinAI ACCGGT 2 cut(s) 1691, 1940
PleI GAGTC 6 cut(s) 28, 653, 1726, 1792, 1884, 2672
PmaCI CACGTG 3 cut(s) 77, 458, 1883
PmlI CACGTG 3 cut(s) 77, 458, 1883
PpsI GAGTC 6 cut(s) 28, 653, 1726, 1792, 1884, 2672
Ppu21I YACGTR 5 cut(s) 77, 167, 458, 620, 1883
PpuMI RGGWCCY 1 cut(s) 1507
PshAI GACNNNNGTC 1 cut(s) 1014
PsiI TTATAA 2 cut(s) 1001, 2577
Psp5II RGGWCCY 1 cut(s) 1507
Psp6I CCWGG 3 cut(s) 910, 1581, 2071
PspCI CACGTG 3 cut(s) 77, 458, 1883
PspEI GGTNACC 1 cut(s) 2536
PspFI CCCAGC 1 cut(s) 1598
PspGI CCWGG 3 cut(s) 910, 1581, 2071
PspN4I GGNNCC 6 cut(s) 367, 592, 822, 1509, 1935, 1993
PspPI GGNCC 4 cut(s) 820, 1507, 1703, 1934
PspPPI RGGWCCY 1 cut(s) 1507
PspXI VCTCGAGB 1 cut(s) 642
PsuI RGATCY 5 cut(s) 80, 510, 590, 667, 1329
PsyI GACNNNGTC 1 cut(s) 1494
PvuII CAGCTG 1 cut(s) 1403
RsaI GTAC 3 cut(s) 403, 779, 1299
RsaNI GTAC 3 cut(s) 402, 778, 1298
RseI CAYNNNNRTG 3 cut(s) 17, 689, 2172
SapI GCTCTTC 1 cut(s) 2602
SaqAI TTAA 8 cut(s) 140, 441, 446, 1181, 1335, 2105, 2216, 2788
Sau3AI GATC 9 cut(s) 80, 89, 98, 510, 590, 667, 1329, 1432, 2664
Sau96I GGNCC 4 cut(s) 820, 1507, 1703, 1934
SchI GAGTC 6 cut(s) 28, 654, 1727, 1793, 1884, 2672
ScrFI CCNGG 3 cut(s) 912, 1583, 2073
SduI GDGCHC 3 cut(s) 246, 600, 1882
SexAI ACCWGGT 1 cut(s) 910
SfaNI GCATC 4 cut(s) 442, 750, 2178, 2640
Sfr274I CTCGAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 3 cut(s) 820, 1507, 1934
SlaI CTCGAG 1 cut(s) 642
SmiMI CAYNNNNRTG 3 cut(s) 17, 689, 2172
SmlI CTYRAG 7 cut(s) 554, 642, 650, 1334, 1529, 1799, 1892
SmoI CTYRAG 7 cut(s) 554, 642, 650, 1334, 1529, 1799, 1892
SsiI CCGC 2 cut(s) 842, 2114
SspI AATATT 1 cut(s) 679
StyD4I CCNGG 3 cut(s) 910, 1581, 2071
StyI CCWWGG 4 cut(s) 246, 432, 1269, 2754
TaqII GACCGA 1 cut(s) 2555
TauI GCSGC 1 cut(s) 844
TfiI GAWTC 9 cut(s) 408, 1281, 1388, 1897, 2008, 2319, 2361, 2547, 2771
Tru1I TTAA 8 cut(s) 140, 441, 446, 1181, 1335, 2105, 2216, 2788
Tru9I TTAA 8 cut(s) 140, 441, 446, 1181, 1335, 2105, 2216, 2788
TscAI CASTG 4 cut(s) 967, 1217, 1296, 2050
TseFI GTSAC 4 cut(s) 575, 1711, 2536, 2713
Tsp45I GTSAC 4 cut(s) 575, 1711, 2536, 2713
TspGWI ACGGA 4 cut(s) 311, 795, 1565, 1730
TspRI CASTG 4 cut(s) 967, 1217, 1296, 2050
Tth111I GACNNNGTC 1 cut(s) 1494
Van91I CCANNNNNTGG 1 cut(s) 830
Vha464I CTTAAG 1 cut(s) 1334
VneI GTGCAC 1 cut(s) 1878
VpaK11BI GGWCC 3 cut(s) 820, 1507, 1934
XapI RAATTY 4 cut(s) 375, 655, 864, 1359
XbaI TCTAGA 1 cut(s) 2014
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 2565
XmnI GAANNNNTTC 2 cut(s) 375, 1323
ZraI GACGTC 1 cut(s) 2123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.