Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010299.1

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3995

Gene Structure 3995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010299.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

gttggaatcatggctagggttttggttcagtccacgaatattcccggtgtggttggcgggcgaaggcttgcccaatctaaaggatctggaaatactagaaggtcgaccaagatgatgtgtaccttgcgagcacctgctttgagactgagcagtttctccggactacgtagtgttaatgctctagatattatggcgaggcctgggcaagacttgtattctaaggtgggagtagctatctcctcccggcgtcaaaaggctagtagatgtgtgcccaaagccatgtttgagcgcttcacagaaaaagcaataaaggtgattatgcttgcacaagaggaagcaaggcgactcggtcacaactttgttggtacagagcagatacttttgggtcttattggtgaaggaactggaattgctgccaaggtccttaaatctatgggaatcaatcttaaagatgcacgcgttgaagtggaaaagatcattggaaggggtagtggctttgttgctgttgaaatcccattcactcctcgtgcaaagcgagttttggaactgtcactggaggaagctcgacaactgggccataactatattggttctgaacacttgcttttgggactgcttcgggaaggtgagggtgtggcagctcgtgttcttgagaatttaggcgctgaccccagcaacattcgtacacaggttattcgtatggtgggtgagagcacagaagctgttggtgttggagctgggcagggaagcagtggcaacaagatgccaactctggaggagtatggtaccaatttgactaagctagcagaggagggaaagctggatcctgttgttggaagacaaccacaaattgaacgtgttgtccaaattttgggtaggcggacaaagaataacccctgcctgattggggaacctggtgttgggaagactgcaattgctgaaggtcttgctcaacgaattgcaagcggtgatgtgcctgaaacaatagagggaaagaaggttatcactctggatatgggtcttcttgttgctggtacaaaataccgtggagagttcgaggaaagattaaagaagctgatggaggaaatcaaacaaagtgatgagataattttgttcattgatgaggtgcacactttaattggagcaggagcagcagaaggtgcaattgatgctgccaatatattaaaaccagctcttgcaagaggtgaactgcagtgtattggagccaccactctagatgaatacagaaagcacattgagaaagacccagcattggaaagacgttttcaaccagttaaagttcctgaaccatctgtggacgaaacaatacagattttgcgagggctccgggagcgatatgagatccaccacaaactccggtatactgatgaagctctagtatctgccgctcagctatcataccagtacatcagtgatcgctttctacctgataaagcaattgacttgattgatgaagctggttctcgagttcgccttcgtcatgcacagctacctgaagaagctagagaccttgacaaagaactgagacagattaccaaggagaagaatgaagctgttcgaagccaagactttgaaaagctacctgaagaagctagagaccttgacaaagaactgagacagattaccaaggagaagaatgaagctgttcgaagccaagactttgaaaaggctggggagttgcgtgacagagaaatggacctcaagacacagatcacagctataacagagaaaggcaaagagatgagcaaggctgagagcgaggcaggggatgtaggacctatggtaactgaagtggatattcaacatattgtctcctcttggactggtattcctgttgacaaagtgtcagctgatgaatcagatcgccttctcaagatggaagagaccctccataagcgggttattggtcaggatgaagcagtcaaggctattagtcgtgctattcgtcgagcccgtgttggactgaaaaatcctaatcgtccaattgccagtttcatcttttctggtccaactggtgttggaaaatccgaactcgcaaaagctttggctgcatactactttggctctgaagaagccatgattcgtcttgatatgagtgaattcatggaaaggcacactgtctcaaagcttattggttctccccctggttatgttggttacaccgagggaggtcagcttactgaagctgttagacgtcgtccttacactgtggtgctttttgatgagattgagaaggctcatccagatgtcttcaacatgatgcttcaaattcttgaggatggaagattgactgacagcaagggcagaactgtggatttcaagaatacacttctgatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

786

Amino Acids

86.8

Weight (kDa)

7.75

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
AatII	GACGTC	1 cut(s)	2218
Acc36I	ACCTGC	1 cut(s)	142
Acc65I	GGTACC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	785
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	1409
AccI	GTMKAC	2 cut(s)	104, 1382
AccII	CGCG	1 cut(s)	459
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	5 cut(s)	57, 880, 966, 1407, 1918
AclWI	GGATC	4 cut(s)	91, 818, 831, 1357
AcsI	RAATTY	4 cut(s)	655, 867, 2120, 2289
AcuI	CTGAAG	6 cut(s)	960, 1536, 1626, 1830, 2109, 2223
AcyI	GRCGYC	2 cut(s)	247, 2215
AfaI	GTAC	6 cut(s)	121, 367, 685, 787, 1036, 1427
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	6 cut(s)	833, 871, 907, 920, 1273, 1918
AflIII	ACRYGT	2 cut(s)	457, 856
AhdI	GACNNNNNGTC	1 cut(s)	1864
AjnI	CCWGG	3 cut(s)	199, 913, 2164
AjuI	GAANNNNNNNTTGG	4 cut(s)	462, 494, 903, 935
AleI	CACNNNNGTG	1 cut(s)	2231
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
Alw21I	GWGCWC	3 cut(s)	133, 716, 1131
Alw26I	GTCTC	8 cut(s)	136, 1521, 1540, 1611, 1630, 1837, 1898, 2146
Alw44I	GTGCAC	1 cut(s)	1127
AlwI	GGATC	4 cut(s)	91, 818, 831, 1357
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	1485
Aor13HI	TCCGGA	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	2 cut(s)	197, 574
ApaLI	GTGCAC	1 cut(s)	1127
ApeKI	GCWGC	5 cut(s)	413, 638, 1151, 1172, 2069
ApoI	RAATTY	4 cut(s)	655, 867, 2120, 2289
Asp700I	GAANNNNTTC	2 cut(s)	1575, 1665
Asp718I	GGTACC	1 cut(s)	785
AspLEI	GCGC	2 cut(s)	291, 665
AspS9I	GGNCC	5 cut(s)	421, 574, 1717, 1796, 2027
AsuC2I	CCSGG	3 cut(s)	45, 244, 1349
AsuHPI	GGTGA	6 cut(s)	325, 407, 638, 719, 980, 1217
AsuII	TTCGAA	2 cut(s)	1579, 1669
AsuNHI	GCTAGC	1 cut(s)	802
AvaI	CYCGRG	1 cut(s)	1485
AvaII	GGWCC	4 cut(s)	421, 1717, 1796, 2027
BaeGI	GKGCMC	2 cut(s)	273, 1131
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	2 cut(s)	1347, 1975
BauI	CACGAG	2 cut(s)	525, 642
BbsI	GAAGAC	4 cut(s)	844, 932, 1013, 2263
Bbv12I	GWGCWC	3 cut(s)	133, 716, 1131
BbvI	GCAGC	5 cut(s)	400, 650, 1159, 1163, 2056
BccI	CCATC	4 cut(s)	1072, 1318, 1891, 2294
BciT130I	CCWGG	3 cut(s)	201, 915, 2166
BcnI	CCSGG	3 cut(s)	45, 244, 1349
BcoDI	GTCTC	8 cut(s)	136, 1521, 1540, 1611, 1630, 1837, 1898, 2146
BfaI	CTAG	9 cut(s)	15, 96, 182, 258, 803, 1235, 1397, 1524, 1614
BfmI	CTRYAG	1 cut(s)	1211
BfoI	RGCGCY	2 cut(s)	292, 666
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	6 cut(s)	414, 639, 1152, 1173, 1407, 2070
BlpI	GCTNAGC	1 cut(s)	1410
BlsI	GCNGC	6 cut(s)	415, 640, 1153, 1174, 1408, 2071
Bme1390I	CCNGG	6 cut(s)	45, 201, 244, 915, 1349, 2166
Bme18I	GGWCC	4 cut(s)	421, 1717, 1796, 2027
BmeRI	GACNNNNNGTC	1 cut(s)	1864
BmeT110I	CYCGRG	1 cut(s)	1485
BmgT120I	GGNCC	5 cut(s)	421, 574, 1717, 1796, 2027
BmiI	GGNNCC	5 cut(s)	787, 825, 912, 1225, 1346
BmrFI	CCNGG	6 cut(s)	45, 201, 244, 915, 1349, 2166
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	4 cut(s)	442, 753, 1159, 2271
BmtI	GCTAGC	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	4 cut(s)	844, 932, 1013, 2263
BpmI	CTGGAG	2 cut(s)	575, 794
Bpu1102I	GCTNAGC	1 cut(s)	1410
Bpu14I	TTCGAA	2 cut(s)	1579, 1669
BpuEI	CTTGAG	4 cut(s)	671, 1706, 1877, 2315
BpuMI	CCSGG	3 cut(s)	45, 244, 1349
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	247, 2215
BsaI	GGTCTC	3 cut(s)	1521, 1611, 1898
BsaJI	CCNNGG	7 cut(s)	200, 417, 1045, 1557, 1647, 2164, 2184
BsaWI	WCCGGW	2 cut(s)	158, 1377
Bsc4I	CCNNNNNNNGG	6 cut(s)	833, 871, 907, 920, 1273, 1918
Bse1I	ACTGG	8 cut(s)	409, 558, 576, 1292, 1423, 1849, 2010, 2038
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	3 cut(s)	201, 915, 2166
BseDI	CCNNGG	7 cut(s)	200, 417, 1045, 1557, 1647, 2164, 2184
BseGI	GGATG	4 cut(s)	1795, 1939, 2260, 2305
BseLI	CCNNNNNNNGG	6 cut(s)	833, 871, 907, 920, 1273, 1918
BseMII	CTCAG	5 cut(s)	137, 1424, 1535, 1625, 1764
BseNI	ACTGG	8 cut(s)	409, 558, 576, 1292, 1423, 1849, 2010, 2038
BseRI	GAGGAG	5 cut(s)	229, 513, 791, 824, 1825
BseSI	GKGCMC	2 cut(s)	273, 1131
BseXI	GCAGC	5 cut(s)	400, 650, 1159, 1163, 2056
BseYI	CCCAGC	4 cut(s)	671, 737, 1267, 1691
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	199, 576
BshNI	GGYRCC	1 cut(s)	785
BsiHKAI	GWGCWC	3 cut(s)	133, 716, 1131
BsiHKCI	CYCGRG	1 cut(s)	1485
BsiSI	CCGG	5 cut(s)	45, 159, 244, 1348, 1378
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	6 cut(s)	833, 871, 907, 920, 1273, 1918
BsmAI	GTCTC	8 cut(s)	136, 1521, 1540, 1611, 1630, 1837, 1898, 2146
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	2 cut(s)	199, 576
Bso31I	GGTCTC	3 cut(s)	1521, 1611, 1898
BsoBI	CYCGRG	1 cut(s)	1485
Bsp119I	TTCGAA	2 cut(s)	1579, 1669
Bsp1286I	GDGCHC	6 cut(s)	133, 273, 716, 1131, 1347, 1975
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
Bsp1720I	GCTNAGC	1 cut(s)	1410
BspACI	CCGC	5 cut(s)	57, 880, 966, 1407, 1918
BspANI	GGCC	2 cut(s)	199, 576
BspCNI	CTCAG	5 cut(s)	138, 1423, 1536, 1626, 1765
BspEI	TCCGGA	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	5 cut(s)	787, 825, 912, 1225, 1346
BspMAI	CTGCAG	1 cut(s)	1215
BspMI	ACCTGC	1 cut(s)	142
BspOI	GCTAGC	1 cut(s)	806
BspPI	GGATC	4 cut(s)	91, 818, 831, 1357
BspT104I	TTCGAA	2 cut(s)	1579, 1669
BspT107I	GGYRCC	1 cut(s)	785
BspTNI	GGTCTC	3 cut(s)	1521, 1611, 1898
BsrBI	CCGCTC	1 cut(s)	1409
BsrI	ACTGG	8 cut(s)	409, 558, 576, 1292, 1423, 1849, 2010, 2038
BssECI	CCNNGG	7 cut(s)	200, 417, 1045, 1557, 1647, 2164, 2184
BssMI	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
BssNAI	GTATAC	1 cut(s)	1383
BssNI	GRCGYC	2 cut(s)	247, 2215
BssSI	CACGAG	2 cut(s)	525, 642
BssT1I	CCWWGG	3 cut(s)	417, 1557, 1647
Bst1107I	GTATAC	1 cut(s)	1383
Bst2BI	CACGAG	2 cut(s)	525, 642
Bst2UI	CCWGG	3 cut(s)	201, 915, 2166
Bst4CI	ACNGT	5 cut(s)	549, 1046, 2140, 2230, 2332
Bst6I	CTCTTC	1 cut(s)	1896
BstACI	GRCGYC	2 cut(s)	247, 2215
BstAPI	GCANNNNNTGC	2 cut(s)	1160, 1169
BstBAI	YACGTR	1 cut(s)	167
BstBI	TTCGAA	2 cut(s)	1579, 1669
BstC8I	GCNNGC	7 cut(s)	59, 69, 129, 324, 457, 804, 964
BstDEI	CTNAG	7 cut(s)	146, 219, 798, 1410, 1544, 1634, 1773
BstDSI	CCRYGG	1 cut(s)	1045
BstF5I	GGATG	4 cut(s)	1795, 1939, 2260, 2305
BstFNI	CGCG	1 cut(s)	459
BstH2I	RGCGCY	2 cut(s)	292, 666
BstHHI	GCGC	2 cut(s)	291, 665
BstKTI	GATC	8 cut(s)	86, 477, 826, 1365, 1438, 1734, 1885, 2358
BstMAI	GTCTC	8 cut(s)	136, 1521, 1540, 1611, 1630, 1837, 1898, 2146
BstMBI	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
BstMWI	GCNNNNNNNGC	6 cut(s)	1151, 1160, 1169, 1351, 1946, 2069
BstNI	CCWGG	3 cut(s)	201, 915, 2166
BstSCI	CCNGG	6 cut(s)	43, 199, 242, 913, 1347, 2164
BstSFI	CTRYAG	1 cut(s)	1211
BstSLI	GKGCMC	2 cut(s)	273, 1131
BstSNI	TACGTA	1 cut(s)	167
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	5 cut(s)	400, 650, 1159, 1163, 2056
BstV2I	GAAGAC	4 cut(s)	844, 932, 1013, 2263
BstX2I	RGATCY	3 cut(s)	83, 823, 1362
BstYI	RGATCY	3 cut(s)	83, 823, 1362
BstZ17I	GTATAC	1 cut(s)	1383
BsuRI	GGCC	2 cut(s)	199, 576
BtgI	CCRYGG	1 cut(s)	1045
BtsCI	GGATG	4 cut(s)	1795, 1939, 2260, 2305
BtsI	GCAGTG	2 cut(s)	757, 1220
BtsIMutI	CAGTG	6 cut(s)	551, 757, 1220, 1438, 2136, 2226
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	7 cut(s)	59, 69, 129, 324, 457, 804, 964
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	2 cut(s)	291, 665
Cfr13I	GGNCC	5 cut(s)	421, 574, 1717, 1796, 2027
CseI	GACGC	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	6 cut(s)	120, 366, 684, 786, 1035, 1426
CviAII	CATG	6 cut(s)	10, 280, 1502, 2098, 2125, 2278
CviQI	GTAC	6 cut(s)	120, 366, 684, 786, 1035, 1426
DdeI	CTNAG	7 cut(s)	146, 219, 798, 1410, 1544, 1634, 1773
DpnI	GATC	8 cut(s)	85, 476, 825, 1364, 1437, 1733, 1884, 2357
DpnII	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
DriI	GACNNNNNGTC	1 cut(s)	1864
Eam1104I	CTCTTC	1 cut(s)	1896
Eam1105I	GACNNNNNGTC	1 cut(s)	1864
EarI	CTCTTC	1 cut(s)	1896
EciI	GGCGGA	1 cut(s)	895
Eco105I	TACGTA	1 cut(s)	167
Eco130I	CCWWGG	3 cut(s)	417, 1557, 1647
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	2 cut(s)	1347, 1975
Eco31I	GGTCTC	3 cut(s)	1521, 1611, 1898
Eco47I	GGWCC	4 cut(s)	421, 1717, 1796, 2027
Eco47III	AGCGCT	1 cut(s)	290
Eco57I	CTGAAG	6 cut(s)	960, 1536, 1626, 1830, 2109, 2223
Eco88I	CYCGRG	1 cut(s)	1485
EcoO109I	RGGNCCY	2 cut(s)	421, 1796
EcoRI	GAATTC	1 cut(s)	2120
EcoRII	CCWGG	3 cut(s)	199, 913, 2164
EcoT14I	CCWWGG	3 cut(s)	417, 1557, 1647
EcoT38I	GRGCYC	2 cut(s)	1347, 1975
ErhI	CCWWGG	3 cut(s)	417, 1557, 1647
FaeI	CATG	6 cut(s)	13, 283, 1505, 2101, 2128, 2281
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	6 cut(s)	9, 279, 1501, 2097, 2124, 2277
FauI	CCCGC	2 cut(s)	50, 1911
FblI	GTMKAC	2 cut(s)	104, 1382
Fnu4HI	GCNGC	6 cut(s)	414, 639, 1152, 1173, 1407, 2070
FokI	GGATG	4 cut(s)	1802, 1946, 2247, 2312
FriOI	GRGCYC	2 cut(s)	1347, 1975
Fsp4HI	GCNGC	6 cut(s)	414, 639, 1152, 1173, 1407, 2070
FspBI	CTAG	9 cut(s)	15, 96, 182, 258, 803, 1235, 1397, 1524, 1614
GlaI	GCGC	2 cut(s)	290, 664
GluI	GCNGC	6 cut(s)	414, 639, 1152, 1173, 1407, 2070
GsaI	CCCAGC	4 cut(s)	675, 741, 1271, 1695
GsuI	CTGGAG	2 cut(s)	575, 794
HaeII	RGCGCY	2 cut(s)	292, 666
HaeIII	GGCC	2 cut(s)	199, 576
HapII	CCGG	5 cut(s)	45, 159, 244, 1348, 1378
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	291, 665
Hin1I	GRCGYC	2 cut(s)	247, 2215
Hin1II	CATG	6 cut(s)	13, 283, 1505, 2101, 2128, 2281
Hin6I	GCGC	2 cut(s)	289, 663
HinP1I	GCGC	2 cut(s)	289, 663
HincII	GTYRAC	2 cut(s)	105, 1858
HindII	GTYRAC	2 cut(s)	105, 1858
HindIII	AAGCTT	2 cut(s)	2061, 2147
HinfI	GANTC	5 cut(s)	6, 345, 438, 1877, 2101
HpaII	CCGG	5 cut(s)	45, 159, 244, 1348, 1378
HphI	GGTGA	6 cut(s)	325, 407, 638, 719, 980, 1217
Hpy166II	GTNNAC	9 cut(s)	33, 105, 120, 686, 1129, 1208, 1318, 1383, 1858
Hpy188I	TCNGA	5 cut(s)	595, 1882, 2050, 2089, 2355
Hpy8I	GTNNAC	9 cut(s)	33, 105, 120, 686, 1129, 1208, 1318, 1383, 1858
Hpy99I	CGWCG	2 cut(s)	1971, 2220
HpyCH4III	ACNGT	5 cut(s)	549, 1046, 2140, 2230, 2332
HpyCH4IV	ACGT	4 cut(s)	166, 856, 1282, 2215
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1151, 1160, 1169, 1351, 1946, 2069
HpyF3I	CTNAG	7 cut(s)	146, 219, 798, 1410, 1544, 1634, 1773
HpySE526I	ACGT	4 cut(s)	166, 856, 1282, 2215
Hsp92I	GRCGYC	2 cut(s)	247, 2215
Hsp92II	CATG	6 cut(s)	13, 283, 1505, 2101, 2128, 2281
HspAI	GCGC	2 cut(s)	289, 663
Kpn2I	TCCGGA	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	789
Kzo9I	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
LmnI	GCTCC	6 cut(s)	734, 1142, 1148, 1223, 1350, 1351
Lsp1109I	GCAGC	5 cut(s)	400, 650, 1159, 1163, 2056
LweI	GCATC	4 cut(s)	442, 753, 1159, 2271
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	9 cut(s)	15, 96, 182, 258, 803, 1235, 1397, 1524, 1614
MaeII	ACGT	4 cut(s)	166, 856, 1282, 2215
MaeIII	GTNAC	5 cut(s)	350, 549, 1703, 1804, 2177
MalI	GATC	8 cut(s)	85, 476, 825, 1364, 1437, 1733, 1884, 2357
MbiI	CCGCTC	1 cut(s)	1409
MboI	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
MfeI	CAATTG	4 cut(s)	933, 1164, 1458, 2004
MflI	RGATCY	3 cut(s)	83, 823, 1362
MhlI	GDGCHC	6 cut(s)	133, 273, 716, 1131, 1347, 1975
MluI	ACGCGT	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	5 cut(s)	712, 814, 1960, 2020, 2054
MroI	TCCGGA	1 cut(s)	158
MroXI	GAANNNNTTC	2 cut(s)	1575, 1665
MseI	TTAA	7 cut(s)	174, 426, 447, 1067, 1136, 1184, 1296
MslI	CAYNNNNRTG	2 cut(s)	2231, 2265
MspA1I	CMGCKG	1 cut(s)	1871
MspI	CCGG	5 cut(s)	45, 159, 244, 1348, 1378
MspR9I	CCNGG	6 cut(s)	45, 201, 244, 915, 1349, 2166
MunI	CAATTG	4 cut(s)	933, 1164, 1458, 2004
MvaI	CCWGG	3 cut(s)	201, 915, 2166
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	6 cut(s)	1151, 1160, 1169, 1351, 1946, 2069
NciI	CCSGG	3 cut(s)	45, 244, 1349
NdeII	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
NheI	GCTAGC	1 cut(s)	802
NlaIII	CATG	6 cut(s)	13, 283, 1505, 2101, 2128, 2281
NlaIV	GGNNCC	5 cut(s)	787, 825, 912, 1225, 1346
NmuCI	GTSAC	3 cut(s)	350, 549, 1703
NspV	TTCGAA	2 cut(s)	1579, 1669
OliI	CACNNNNGTG	1 cut(s)	2231
PaeR7I	CTCGAG	1 cut(s)	1485
PaqCI	CACCTGC	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	3 cut(s)	532, 1963, 1972
PdmI	GAANNNNTTC	2 cut(s)	1575, 1665
PfeI	GAWTC	4 cut(s)	6, 438, 1877, 2101
PflFI	GACNNNGTC	2 cut(s)	348, 2217
PflMI	CCANNNNNTGG	1 cut(s)	871
PfoI	TCCNGGA	1 cut(s)	1347
PkrI	GCNGC	6 cut(s)	415, 640, 1153, 1174, 1408, 2071
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	167
PpuMI	RGGWCCY	2 cut(s)	421, 1796
Psp5II	RGGWCCY	2 cut(s)	421, 1796
Psp6I	CCWGG	3 cut(s)	199, 913, 2164
PspFI	CCCAGC	4 cut(s)	671, 737, 1267, 1691
PspGI	CCWGG	3 cut(s)	199, 913, 2164
PspN4I	GGNNCC	5 cut(s)	787, 825, 912, 1225, 1346
PspPI	GGNCC	5 cut(s)	421, 574, 1717, 1796, 2027
PspPPI	RGGWCCY	2 cut(s)	421, 1796
PstI	CTGCAG	1 cut(s)	1215
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	3 cut(s)	83, 823, 1362
PsyI	GACNNNGTC	2 cut(s)	348, 2217
PvuII	CAGCTG	1 cut(s)	1871
RsaI	GTAC	6 cut(s)	121, 367, 685, 787, 1036, 1427
RsaNI	GTAC	6 cut(s)	120, 366, 684, 786, 1035, 1426
RseI	CAYNNNNRTG	2 cut(s)	2231, 2265
SalI	GTCGAC	1 cut(s)	103
SaqAI	TTAA	7 cut(s)	174, 426, 447, 1067, 1136, 1184, 1296
SatI	GCNGC	6 cut(s)	414, 639, 1152, 1173, 1407, 2070
Sau3AI	GATC	7 cut(s)	83, 474, 823, 1362, 1435, 1731, 1882
Sau96I	GGNCC	5 cut(s)	421, 574, 1717, 1796, 2027
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	6 cut(s)	45, 201, 244, 915, 1349, 2166
SduI	GDGCHC	6 cut(s)	133, 273, 716, 1131, 1347, 1975
SexAI	ACCWGGT	1 cut(s)	913
SfaNI	GCATC	4 cut(s)	442, 753, 1159, 2271
SfcI	CTRYAG	1 cut(s)	1211
Sfr274I	CTCGAG	1 cut(s)	1485
SfuI	TTCGAA	2 cut(s)	1579, 1669
SinI	GGWCC	4 cut(s)	421, 1717, 1796, 2027
SlaI	CTCGAG	1 cut(s)	1485
SmiMI	CAYNNNNRTG	2 cut(s)	2231, 2265
SmlI	CTYRAG	5 cut(s)	650, 1485, 1721, 1892, 2294
SmoI	CTYRAG	5 cut(s)	650, 1485, 1721, 1892, 2294
SnaBI	TACGTA	1 cut(s)	167
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	5 cut(s)	57, 880, 966, 1407, 1918
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	9 cut(s)	15, 96, 182, 258, 803, 1235, 1397, 1524, 1614
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	6 cut(s)	43, 199, 242, 913, 1347, 2164
StyI	CCWWGG	3 cut(s)	417, 1557, 1647
TaaI	ACNGT	5 cut(s)	549, 1046, 2140, 2230, 2332
TaiI	ACGT	4 cut(s)	169, 859, 1285, 2218
TaqI	TCGA	7 cut(s)	104, 565, 1056, 1486, 1579, 1669, 1969
TaqII	GACCGA	1 cut(s)	338
TatI	WGTACW	1 cut(s)	1425
TauI	GCSGC	1 cut(s)	1409
TfiI	GAWTC	4 cut(s)	6, 438, 1877, 2101
Tru1I	TTAA	7 cut(s)	174, 426, 447, 1067, 1136, 1184, 1296
Tru9I	TTAA	7 cut(s)	174, 426, 447, 1067, 1136, 1184, 1296
TscAI	CASTG	6 cut(s)	558, 757, 1220, 1438, 2143, 2233
TseFI	GTSAC	3 cut(s)	350, 549, 1703
TseI	GCWGC	5 cut(s)	413, 638, 1151, 1172, 2069
Tsp45I	GTSAC	3 cut(s)	350, 549, 1703
TspRI	CASTG	6 cut(s)	558, 757, 1220, 1438, 2143, 2233
Tth111I	GACNNNGTC	2 cut(s)	348, 2217
Van91I	CCANNNNNTGG	1 cut(s)	871
VneI	GTGCAC	1 cut(s)	1127
VpaK11BI	GGWCC	4 cut(s)	421, 1717, 1796, 2027
XapI	RAATTY	4 cut(s)	655, 867, 2120, 2289
XbaI	TCTAGA	2 cut(s)	181, 1234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XhoI	CTCGAG	1 cut(s)	1485
XmiI	GTMKAC	2 cut(s)	104, 1382
XmnI	GAANNNNTTC	2 cut(s)	1575, 1665
XspI	CTAG	9 cut(s)	15, 96, 182, 258, 803, 1235, 1397, 1524, 1614
ZraI	GACGTC	1 cut(s)	2216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.