Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

49448537 .. 49450592

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTTGAGCGCTTCTCAGAAAAGGCAATAAAGGTGATTATGCTTGCACAAGAGGAAGCAAGGCGACTTGGTCACAACTTCGTTGGTGCACGCGTTGAAGTGGAAAAGATCATTGGAAGGGGTAGTGGTTTTGTTGCTGTTGAAATTCCGTTCACTCCTCTTGCAAAGCGAGTTTTGGAACTGTCACTGGAGGAAGCTCGTCAACTGGGCCATAACTATATTGCAAACCTTATCTTTGATCGCTTTCTACCTGAAAAAGCAATTGACTTGATTGATCGAGCTGGTTCTGAAGTTCGCTTTTGTCATGCACAGCTACCTGAAGAAGCTAGAGATCTTGACAAAGAACTGAGACAGATTACCAAGGAGAAGAATGAAGCTGTTCGAAGCCAAGACTTTGAAAAGGTTGGGGAGTTACGTGAGAGAGAAATGGACCGTAAGACACAGATCAGAAATATAAAAGAGAAAGGCAAAGAGATGAGCAAGGCTGAGAGCGAGGCAGGGGATGTAGGACCTATGGTAACTGAAGTGGATATTCAACATATCGTGTTCTCTTGGACTGGTATTCCTGTTGACAAAGTGTCAGCTGATGAATCGGATCGCCTTCCCAAGATGGAAGAGACCCTCCATAAGCGGGTTATTGGTCAGGATGAAGCAGTCAAGGCTATTAGTCGTGCTATTCGCCGAGGCCGTGTTGGACTCAGATATCCTAATCGTCCAATTGCCAGTTTCATCTTTTCTGGTCCAACTGGTGGAAAATCCGAACTCGCAAAAGCTTTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTTGCCTTGATATGAGTGAATTTATGGAACGGCACTCTGTTTCAAAGCTTATTGGTTCTCCCCCTGGTTATGTTGGTTACACTGATGGAGGTCAGCTGACTGAAGCCGTTAGACGCCGTCCTTACACTGTGGTGCTATTTGATGAGATTGAGAAGGCTGATCCAGATGTCTTAAATATGATGCTTCAAATTCTTGAGGATGGAAGATTGACTGACAGCAAGGGCAGAACTGTGGATTTCAAGAATACACTTCTGATCATGACATCTAATGTCGGAAGCAGTGTAATTGAGAAAGGAGGACTCCGTAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

374

Amino Acids

42.1

Weight (kDa)

6.19

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_9	PF17871	62 - 140	3e-14	AAA lid domain
AAA_2	PF07724	238 - 368	7.3e-56	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	243 - 363	1.6e-08	AAA domain (dynein-related subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	631
AclWI	GGATC	2 cut(s)	603, 965
AcsI	RAATTY	3 cut(s)	144, 830, 999
AcuI	CTGAAG	5 cut(s)	309, 339, 543, 819, 933
AcyI	GRCGYC	1 cut(s)	925
AfeI	AGCGCT	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	631, 749
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	7 cut(s)	98, 143, 398, 536, 855, 998, 1051
AhdI	GACNNNNNGTC	1 cut(s)	577
AjnI	CCWGG	1 cut(s)	874
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AleI	CACNNNNGTG	1 cut(s)	941
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	343, 611
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	2 cut(s)	603, 965
Aor51HI	AGCGCT	1 cut(s)	11
AoxI	GGCC	2 cut(s)	208, 685
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	3 cut(s)	144, 830, 999
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	4 cut(s)	208, 430, 509, 740
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	3 cut(s)	430, 509, 740
BaeGI	GKGCMC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	3 cut(s)	604, 890, 1004
BceAI	ACGGC	4 cut(s)	672, 857, 902, 912
BciT130I	CCWGG	1 cut(s)	876
BclI	TGATCA	1 cut(s)	1065
BcoDI	GTCTC	2 cut(s)	343, 611
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	13
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	3 cut(s)	430, 509, 740
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmgT120I	GGNCC	4 cut(s)	208, 430, 509, 740
BmrFI	CCNGG	1 cut(s)	876
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	981
BmuI	ACTGGG	1 cut(s)	215
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	1025
BsaAI	YACGTR	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	925
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	360, 682, 874
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 749
Bse1I	ACTGG	5 cut(s)	192, 210, 562, 723, 751
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	3 cut(s)	360, 682, 874
BseGI	GGATG	3 cut(s)	508, 652, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	631, 749
BseMII	CTCAG	4 cut(s)	30, 338, 477, 712
BseNI	ACTGG	5 cut(s)	192, 210, 562, 723, 751
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	766
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	210, 687
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	631, 749
BsmAI	GTCTC	2 cut(s)	343, 611
BsnI	GGCC	2 cut(s)	210, 687
Bso31I	GGTCTC	1 cut(s)	611
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	2 cut(s)	210, 687
BspCNI	CTCAG	4 cut(s)	29, 339, 478, 711
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	1068
BspPI	GGATC	2 cut(s)	603, 965
BspT104I	TTCGAA	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	611
BsrI	ACTGG	5 cut(s)	192, 210, 562, 723, 751
BssECI	CCNNGG	3 cut(s)	360, 682, 874
BssMI	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
BssNI	GRCGYC	1 cut(s)	925
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	4 cut(s)	183, 434, 940, 1042
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	925
BstBAI	YACGTR	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	45, 91
BstDEI	CTNAG	4 cut(s)	16, 347, 486, 698
BstF5I	GGATG	3 cut(s)	508, 652, 1015
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	8 cut(s)	111, 241, 277, 334, 447, 598, 973, 1068
BstMAI	GTCTC	2 cut(s)	343, 611
BstMBI	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 779
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	874
BstSLI	GKGCMC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	766
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	210, 687
BtsCI	GGATG	3 cut(s)	508, 652, 1015
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	4 cut(s)	185, 891, 936, 1096
Cac8I	GCNNGC	2 cut(s)	45, 91
CciI	TCATGA	1 cut(s)	1068
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	4 cut(s)	208, 430, 509, 740
CseI	GACGC	1 cut(s)	933
CviAII	CATG	3 cut(s)	305, 808, 1069
DdeI	CTNAG	4 cut(s)	16, 347, 486, 698
DpnI	GATC	8 cut(s)	110, 240, 276, 333, 446, 597, 972, 1067
DpnII	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
DriI	GACNNNNNGTC	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	609
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	704
Eco47I	GGWCC	3 cut(s)	430, 509, 740
Eco47III	AGCGCT	1 cut(s)	11
Eco57I	CTGAAG	5 cut(s)	309, 339, 543, 819, 933
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	3 cut(s)	308, 811, 1072
FatI	CATG	3 cut(s)	304, 807, 1068
FauI	CCCGC	1 cut(s)	624
FbaI	TGATCA	1 cut(s)	1065
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	3 cut(s)	515, 659, 1022
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	210, 687
HgaI	GACGC	1 cut(s)	933
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	925
Hin1II	CATG	3 cut(s)	308, 811, 1072
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	2 cut(s)	203, 571
HindII	GTYRAC	2 cut(s)	203, 571
HindIII	AAGCTT	2 cut(s)	771, 857
HinfI	GANTC	3 cut(s)	590, 696, 1110
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	89, 153, 203, 571
Hpy188I	TCNGA	9 cut(s)	19, 289, 449, 595, 701, 760, 799, 1065, 1085
Hpy188III	TCNNGA	6 cut(s)	335, 644, 974, 1004, 1051, 1069
Hpy8I	GTNNAC	4 cut(s)	89, 153, 203, 571
HpyAV	CCTTC	3 cut(s)	111, 611, 958
HpyCH4III	ACNGT	4 cut(s)	183, 434, 940, 1042
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	47, 89, 164, 224, 308, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 779
HpyF3I	CTNAG	4 cut(s)	16, 347, 486, 698
HpySE526I	ACGT	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	925
Hsp92II	CATG	3 cut(s)	308, 811, 1072
HspAI	GCGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	1065
Kzo9I	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
LmnI	GCTCC	1 cut(s)	1119
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	1 cut(s)	981
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	5 cut(s)	71, 183, 411, 517, 887
MalI	GATC	8 cut(s)	110, 240, 276, 333, 446, 597, 972, 1067
MboI	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
MboII	GAAGA	5 cut(s)	332, 379, 626, 812, 1026
MfeI	CAATTG	2 cut(s)	261, 717
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	6 cut(s)	144, 261, 717, 830, 999, 1095
MluI	ACGCGT	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	690, 1104
MmeI	TCCRAC	3 cut(s)	673, 767, 1063
MnlI	CCTC	9 cut(s)	46, 168, 184, 487, 632, 677, 893, 1000, 1100
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	983
MslI	CAYNNNNRTG	1 cut(s)	941
MspA1I	CMGCKG	2 cut(s)	584, 907
MspR9I	CCNGG	1 cut(s)	876
MunI	CAATTG	2 cut(s)	261, 717
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	659, 779
NdeII	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
NlaIII	CATG	3 cut(s)	308, 811, 1072
NmeAIII	GCCGAG	1 cut(s)	707
NmuCI	GTSAC	2 cut(s)	71, 183
NspV	TTCGAA	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	941
PagI	TCATGA	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	590
PflFI	GACNNNGTC	2 cut(s)	69, 927
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	1 cut(s)	781
PleI	GAGTC	2 cut(s)	690, 1104
PpsI	GAGTC	2 cut(s)	690, 1104
Ppu21I	YACGTR	1 cut(s)	416
PpuMI	RGGWCCY	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspPI	GGNCC	4 cut(s)	208, 430, 509, 740
PspPPI	RGGWCCY	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	2 cut(s)	69, 927
PvuII	CAGCTG	2 cut(s)	584, 907
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	1 cut(s)	983
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	8 cut(s)	108, 238, 274, 331, 444, 595, 970, 1065
Sau96I	GGNCC	4 cut(s)	208, 430, 509, 740
SchI	GAGTC	2 cut(s)	690, 1104
ScrFI	CCNGG	1 cut(s)	876
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	981
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	3 cut(s)	430, 509, 740
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	6 cut(s)	144, 261, 717, 830, 999, 1095
SsiI	CCGC	1 cut(s)	631
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	874
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	4 cut(s)	183, 434, 940, 1042
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	277, 382
TasI	AATT	6 cut(s)	144, 261, 717, 830, 999, 1095
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	1 cut(s)	983
Tru9I	TTAA	1 cut(s)	983
TscAI	CASTG	4 cut(s)	192, 898, 943, 1096
TseFI	GTSAC	2 cut(s)	71, 183
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	71, 183
TspDTI	ATGAA	4 cut(s)	387, 603, 663, 718
TspGWI	ACGGA	2 cut(s)	138, 1103
TspRI	CASTG	4 cut(s)	192, 898, 943, 1096
Tth111I	GACNNNGTC	2 cut(s)	69, 927
Van91I	CCANNNNNTGG	1 cut(s)	749
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	3 cut(s)	430, 509, 740
XapI	RAATTY	3 cut(s)	144, 830, 999
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.