Rmu_sc0004237.1_g000004

Belongs to the ClpA ClpB family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004237.1
Physical Location & Seq
Forward (+)
24274 .. 26188
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004237.1_g000004.1.cds

Sequence Viewer

Length: 1434 bp
atgatttgtcctttacaagcacctgcattgagattgagcagtttctcaggactccgtagtgttcatgctttagatattatgacgaggcctaggcaagacttatattctaatgtgggagaagctgtctcctctcagcgtcgaaatgctttcagatgtgtgcctaaagccatgtttgagcgcttctcagaaaaggcaataaaggtgattatgcttgcacaagaggaagcaaggcgacttggtcacaacttcgttggtacagagcagatacttttgggtcttattggtgaaggaactggaattgctgccagggtccttaaatatatgagaatcaatcttaaaggtgcacgcgttgaagtggaaaagatcattggaaggggtagtggttttgttgctgttgaaattccgttcactcctcttgcaaagcgagttttggaactgtcactggaggaagctcgtcaactgggccataactatattgcaaaccttatctttgatcgctttctacctgataaagcaattgacttgattgatcgagctggttctgaagttcgcttttgtcatgcacagctacctgaagaagctagagatcttgacaaagaactgagacagattaccaaggagaagaatgaagctattagtagtgaatgtatagaagattgcggccagaaatattggtataatttcaaggttggggagttacgtgagagagaaatggaccttaagacacatatcagaaatataaaagagaaaggcaaagagatgagcaaggctgagagcgaagcaggggatgtaggacctatggtaactgaagtggatattcaacatatcgtgttctcttggactggtattcctgttgacaaagtgtcagctgatgaatcggatcgccttctcaagatggaagagaccctccataagcaggttattggacaggatgaagcagtcaaggctattagtcgtgctattcgccgaggccgtgttggactcagatatcctaatcgtccaattgccagtttcatcttttctggtccaaccggtggaaaatccgaactcgcaaaagctttggctgcatactactttggctctgaagaagccatgatttgccttgatatgagtgaatttatggaacggcactctgtttcaaagcttattggttctccccctggttatgttggttacactgatggaggtcagctgactgaagccgttagacgccgtccttacactgtggtgctatttgatgagattgagaaggctgatccagatgtcttaaatatgatgcttcaaattcttgaggatggaagattgactgacagcaagggcagaactgtggatttcaagaatacacttctgatcatgacttcaaatgttggaagcagtgtaattgagaaaggaggccgacgtataggatttgaccttgattatgatgagaaatag

Protein Analysis

477

Amino Acids

53.55

Weight (kDa)

6.51

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 2 cut(s) 31, 907
AccB7I CCANNNNNTGG 1 cut(s) 1034
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 660
AclWI GGATC 2 cut(s) 888, 1250
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 3 cut(s) 399, 1115, 1284
AcuI CTGAAG 5 cut(s) 564, 594, 828, 1104, 1218
AcyI GRCGYC 1 cut(s) 1210
AfaI GTAC 1 cut(s) 256
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 916, 1034
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 346
AgeI ACCGGT 1 cut(s) 1031
AgsI TTSAA 8 cut(s) 353, 398, 685, 821, 1140, 1283, 1336, 1362
AhdI GACNNNNNGTC 1 cut(s) 862
AjnI CCWGG 2 cut(s) 305, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AleI CACNNNNGTG 1 cut(s) 1226
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 130, 598, 896
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 888, 1250
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 5 cut(s) 86, 463, 661, 970, 1393
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 302, 1064
ApoI RAATTY 3 cut(s) 399, 1115, 1284
AsiGI ACCGGT 1 cut(s) 1031
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 5 cut(s) 310, 463, 715, 794, 1025
AsuHPI GGTGA 2 cut(s) 214, 296
AvaII GGWCC 4 cut(s) 310, 715, 794, 1025
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 289, 1051
BccI CCATC 3 cut(s) 889, 1175, 1289
BceAI ACGGC 4 cut(s) 957, 1142, 1187, 1197
BciT130I CCWGG 2 cut(s) 307, 1161
BclI TGATCA 1 cut(s) 1350
BcoDI GTCTC 3 cut(s) 130, 598, 896
BfaI CTAG 2 cut(s) 90, 582
BfoI RGCGCY 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 2 cut(s) 31, 907
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 303, 661, 1065
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 3 cut(s) 304, 662, 1066
Bme1390I CCNGG 2 cut(s) 307, 1161
Bme18I GGWCC 4 cut(s) 310, 715, 794, 1025
BmeRI GACNNNNNGTC 1 cut(s) 862
BmgT120I GGNCC 5 cut(s) 310, 463, 715, 794, 1025
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 307, 1161
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 1266
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 464
BpuEI CTTGAG 2 cut(s) 875, 1310
BsaAI YACGTR 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 1210
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 5 cut(s) 89, 306, 615, 967, 1159
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 916, 1034
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 5 cut(s) 298, 447, 465, 847, 1008
BseBI CCWGG 2 cut(s) 307, 1161
BseDI CCNNGG 5 cut(s) 89, 306, 615, 967, 1159
BseGI GGATG 3 cut(s) 793, 937, 1300
BseLI CCNNNNNNNGG 2 cut(s) 916, 1034
BseMII CTCAG 6 cut(s) 60, 146, 198, 593, 762, 997
BseNI ACTGG 5 cut(s) 298, 447, 465, 847, 1008
BseRI GAGGAG 2 cut(s) 118, 402
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 2 cut(s) 289, 1051
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 5 cut(s) 88, 465, 663, 972, 1395
BshTI ACCGGT 1 cut(s) 1031
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 1032
BslI CCNNNNNNNGG 2 cut(s) 916, 1034
BsmAI GTCTC 3 cut(s) 130, 598, 896
BsnI GGCC 5 cut(s) 88, 465, 663, 972, 1395
Bso31I GGTCTC 1 cut(s) 896
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
BspACI CCGC 1 cut(s) 660
BspANI GGCC 5 cut(s) 88, 465, 663, 972, 1395
BspCNI CTCAG 6 cut(s) 59, 145, 197, 594, 763, 996
BspFNI CGCG 1 cut(s) 348
BspHI TCATGA 1 cut(s) 1353
BspLI GGNNCC 1 cut(s) 311
BspMI ACCTGC 2 cut(s) 31, 907
BspPI GGATC 2 cut(s) 888, 1250
BspTI CTTAAG 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 896
BsrFI RCCGGY 1 cut(s) 1031
BsrI ACTGG 5 cut(s) 298, 447, 465, 847, 1008
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 5 cut(s) 89, 306, 615, 967, 1159
BssMI GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
BssNI GRCGYC 1 cut(s) 1210
BssT1I CCWWGG 2 cut(s) 89, 615
Bst2UI CCWGG 2 cut(s) 307, 1161
Bst4CI ACNGT 3 cut(s) 438, 1225, 1327
Bst6I CTCTTC 1 cut(s) 894
BstACI GRCGYC 1 cut(s) 1210
BstAFI CTTAAG 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 213, 346
BstDEI CTNAG 6 cut(s) 46, 132, 184, 602, 771, 983
BstF5I GGATG 3 cut(s) 793, 937, 1300
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 7 cut(s) 366, 496, 532, 589, 883, 1258, 1353
BstMAI GTCTC 3 cut(s) 130, 598, 896
BstMBI GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
BstMWI GCNNNNNNNGC 2 cut(s) 944, 1064
BstNI CCWGG 2 cut(s) 307, 1161
BstSCI CCNGG 2 cut(s) 305, 1159
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 289, 1051
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 5 cut(s) 88, 465, 663, 972, 1395
BtsCI GGATG 3 cut(s) 793, 937, 1300
BtsI GCAGTG 1 cut(s) 1381
BtsIMutI CAGTG 4 cut(s) 440, 1176, 1221, 1381
BveI ACCTGC 2 cut(s) 31, 907
Cac8I GCNNGC 2 cut(s) 213, 346
CciI TCATGA 1 cut(s) 1353
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 1031
Cfr13I GGNCC 5 cut(s) 310, 463, 715, 794, 1025
CseI GACGC 2 cut(s) 125, 1218
Csp6I GTAC 1 cut(s) 255
CspAI ACCGGT 1 cut(s) 1031
CviAII CATG 5 cut(s) 65, 169, 560, 1093, 1354
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 6 cut(s) 46, 132, 184, 602, 771, 983
DpnI GATC 7 cut(s) 365, 495, 531, 588, 882, 1257, 1352
DpnII GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
DriI GACNNNNNGTC 1 cut(s) 862
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 894
Eam1105I GACNNNNNGTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 894
Eco130I CCWWGG 2 cut(s) 89, 615
Eco147I AGGCCT 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 896
Eco32I GATATC 1 cut(s) 989
Eco47I GGWCC 4 cut(s) 310, 715, 794, 1025
Eco47III AGCGCT 1 cut(s) 179
Eco57I CTGAAG 5 cut(s) 564, 594, 828, 1104, 1218
EcoO109I RGGNCCY 2 cut(s) 310, 794
EcoRII CCWGG 2 cut(s) 305, 1159
EcoRV GATATC 1 cut(s) 989
EcoT14I CCWWGG 2 cut(s) 89, 615
ErhI CCWWGG 2 cut(s) 89, 615
FaeI CATG 5 cut(s) 68, 172, 563, 1096, 1357
FatI CATG 5 cut(s) 64, 168, 559, 1092, 1353
FbaI TGATCA 1 cut(s) 1350
Fnu4HI GCNGC 3 cut(s) 303, 661, 1065
FokI GGATG 3 cut(s) 800, 944, 1307
Fsp4HI GCNGC 3 cut(s) 303, 661, 1065
FspBI CTAG 2 cut(s) 90, 582
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 303, 661, 1065
GsuI CTGGAG 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 5 cut(s) 88, 465, 663, 972, 1395
HapII CCGG 1 cut(s) 1032
HgaI GACGC 2 cut(s) 125, 1218
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 1210
Hin1II CATG 5 cut(s) 68, 172, 563, 1096, 1357
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 2 cut(s) 458, 856
HindII GTYRAC 2 cut(s) 458, 856
HindIII AAGCTT 2 cut(s) 1056, 1142
HinfI GANTC 4 cut(s) 51, 327, 875, 981
HpaII CCGG 1 cut(s) 1032
HphI GGTGA 2 cut(s) 214, 296
Hpy166II GTNNAC 4 cut(s) 344, 408, 458, 856
Hpy188I TCNGA 9 cut(s) 152, 187, 544, 734, 880, 986, 1045, 1084, 1350
Hpy188III TCNNGA 7 cut(s) 48, 590, 892, 1259, 1289, 1336, 1354
Hpy8I GTNNAC 4 cut(s) 344, 408, 458, 856
Hpy99I CGWCG 2 cut(s) 141, 1401
HpyAV CCTTC 4 cut(s) 281, 366, 896, 1243
HpyCH4III ACNGT 3 cut(s) 438, 1225, 1327
HpyCH4IV ACGT 2 cut(s) 700, 1399
HpyCH4V TGCA 7 cut(s) 26, 215, 344, 419, 479, 563, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 944, 1064
HpyF3I CTNAG 6 cut(s) 46, 132, 184, 602, 771, 983
HpySE526I ACGT 2 cut(s) 700, 1399
Hsp92I GRCGYC 1 cut(s) 1210
Hsp92II CATG 5 cut(s) 68, 172, 563, 1096, 1357
HspAI GCGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 1350
Kzo9I GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
Lsp1109I GCAGC 2 cut(s) 289, 1051
LweI GCATC 1 cut(s) 1266
MaeI CTAG 2 cut(s) 90, 582
MaeII ACGT 2 cut(s) 700, 1399
MaeIII GTNAC 5 cut(s) 239, 438, 696, 802, 1172
MalI GATC 7 cut(s) 365, 495, 531, 588, 882, 1257, 1352
MboI GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
MboII GAAGA 6 cut(s) 587, 634, 665, 911, 1097, 1311
MfeI CAATTG 2 cut(s) 516, 1002
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 8 cut(s) 297, 399, 516, 679, 1002, 1115, 1284, 1380
MluI ACGCGT 1 cut(s) 346
MlyI GAGTC 2 cut(s) 45, 975
MmeI TCCRAC 3 cut(s) 958, 1052, 1348
MseI TTAA 4 cut(s) 315, 336, 720, 1268
MslI CAYNNNNRTG 1 cut(s) 1226
MspA1I CMGCKG 2 cut(s) 869, 1192
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 1 cut(s) 1032
MspR9I CCNGG 2 cut(s) 307, 1161
MunI CAATTG 2 cut(s) 516, 1002
MvaI CCWGG 2 cut(s) 307, 1161
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 944, 1064
NdeII GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
NlaIII CATG 5 cut(s) 68, 172, 563, 1096, 1357
NlaIV GGNNCC 1 cut(s) 311
NmeAIII GCCGAG 1 cut(s) 992
NmuCI GTSAC 2 cut(s) 239, 438
OliI CACNNNNGTG 1 cut(s) 1226
PagI TCATGA 1 cut(s) 1353
PaqCI CACCTGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 970
PfeI GAWTC 2 cut(s) 327, 875
PflFI GACNNNGTC 2 cut(s) 237, 1212
PflMI CCANNNNNTGG 1 cut(s) 1034
PinAI ACCGGT 1 cut(s) 1031
PkrI GCNGC 3 cut(s) 304, 662, 1066
PleI GAGTC 2 cut(s) 45, 975
PpsI GAGTC 2 cut(s) 45, 975
Ppu21I YACGTR 1 cut(s) 701
PpuMI RGGWCCY 2 cut(s) 310, 794
Psp5II RGGWCCY 2 cut(s) 310, 794
Psp6I CCWGG 2 cut(s) 305, 1159
PspGI CCWGG 2 cut(s) 305, 1159
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 5 cut(s) 310, 463, 715, 794, 1025
PspPPI RGGWCCY 2 cut(s) 310, 794
PsuI RGATCY 1 cut(s) 586
PsyI GACNNNGTC 2 cut(s) 237, 1212
PvuII CAGCTG 2 cut(s) 869, 1192
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 1226
SaqAI TTAA 4 cut(s) 315, 336, 720, 1268
SatI GCNGC 3 cut(s) 303, 661, 1065
Sau3AI GATC 7 cut(s) 363, 493, 529, 586, 880, 1255, 1350
Sau96I GGNCC 5 cut(s) 310, 463, 715, 794, 1025
SchI GAGTC 2 cut(s) 45, 975
ScrFI CCNGG 2 cut(s) 307, 1161
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 1 cut(s) 1266
SinI GGWCC 4 cut(s) 310, 715, 794, 1025
SmiMI CAYNNNNRTG 1 cut(s) 1226
SmlI CTYRAG 3 cut(s) 719, 890, 1289
SmoI CTYRAG 3 cut(s) 719, 890, 1289
Sse9I AATT 8 cut(s) 297, 399, 516, 679, 1002, 1115, 1284, 1380
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 660
SspI AATATT 1 cut(s) 671
SspMI CTAG 2 cut(s) 90, 582
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 305, 1159
StyI CCWWGG 2 cut(s) 89, 615
TaaI ACNGT 3 cut(s) 438, 1225, 1327
TaiI ACGT 2 cut(s) 703, 1402
TaqI TCGA 2 cut(s) 139, 532
TasI AATT 8 cut(s) 297, 399, 516, 679, 1002, 1115, 1284, 1380
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 2 cut(s) 327, 875
Tru1I TTAA 4 cut(s) 315, 336, 720, 1268
Tru9I TTAA 4 cut(s) 315, 336, 720, 1268
TscAI CASTG 4 cut(s) 447, 1183, 1228, 1381
TseFI GTSAC 2 cut(s) 239, 438
TseI GCWGC 2 cut(s) 302, 1064
Tsp45I GTSAC 2 cut(s) 239, 438
TspDTI ATGAA 5 cut(s) 53, 642, 888, 948, 1003
TspGWI ACGGA 2 cut(s) 44, 393
TspRI CASTG 4 cut(s) 447, 1183, 1228, 1381
Tth111I GACNNNGTC 2 cut(s) 237, 1212
Van91I CCANNNNNTGG 1 cut(s) 1034
Vha464I CTTAAG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 4 cut(s) 310, 715, 794, 1025
XapI RAATTY 3 cut(s) 399, 1115, 1284
XmaJI CCTAGG 1 cut(s) 89
XspI CTAG 2 cut(s) 90, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.