Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

17521616 .. 17525663

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGTTCTGTACTTTACGAGCACCTGCATTGAGAATGAGCAGTTACACAGGACTCCGGAGTGTTAATGCTTTAGATGTTAGCGTAAAACCCAGGCATGACTTATTTTCGACGGTGAAATTCGCAAACACTAAACGTCGTGAACGAGCAAGCAGATGTGTGCCTAAAGCCATGTTTGAGCGCTTCACAGAAAAAGCAATTAAAGTAATTATGCTTGCACAAGAGGAAGCAAGGCGACTAGGTCACAATTTTGTTGGTACTGAGCAGATACTTTTGGGTCTTATTGGTGAAGGGACCGGTATTGCTGCCAAGGTTCTCAAATCCATGGGAATCAATCTTAAAGATGCACGAGTTGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAAATTCCATTCACTCCTCGTGCAAAGCGAGTTTTGGAGCTGTCACTGGAGGAAGCTCGCCAACTTGGTCATAACTATATTGGCTCCGAGCATTTGCTTCTGGGATTGCTTCGGGAGGGTGAGGGTGTAGCAGCTCGTGTTCTTGAGAATTTAGGTGCTGATCCTAGTAACATTCGCACACAGGTTATTCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGTGCTGGTGTTGGAGGAGGGACCAGTGGTAATAAAATGCCGACTCTAGAAGAATACGGGACCAATTTGACTAAGCTAGCGGAGGAGGGTAAGTTGGATCCTGTTGTTGGAAGACAACCTCAAATTGAACGTGTCGTCCAAATTTTGGGTAGGAGGACCAAGAATAATCCCGGCCGTATTGGAGAACCTGGTGTTGGGAAGACTGCAATTGCAGAAGGTCTTGCTCAACGGATTGCAACTGGTGATGTTCCAGAAACAATAGAGGGAAAGAAGGTTATAACTCTGGATATGGGTCTTCTTGTTGCTGGTACAAAGTACCGTGGAGAGTTTGAGGAAAGATTAAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGAGATTATTTTGTTTATTGATGAGGTGCACACTTTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCCGCAAATATATTAAAACCAGCTCTTGCAAGAGGTGAACTGCAGTGTATTGGAGCCACAACTCTCGATGAATACAGAAAGCACATTGAGAAAGATCGAGCATTGGAAAGGCGATTCCAACCAGTCAAAGTTCCTGAACCAACCGTGGATGAAACCATTCAAATTTTGAGAGGGCTTAGAGAGCGTTACGAGATTCACCACAAGCTCCGCTACACTGATGAAGCCCTGGTATCTGCTGCTCAGCTATCATACCAGTACATCAGTGATCGCTTTCTGCCTGATAAGGCAATTGACTTGATTGATGAAGCTGGTTCTCGAGTTCGCCTTCGTCATGCACAGCTACCTGAAGAAGCTAGAGAGCTTGAGAAAGAGCTGAGGGCAATCACTAAAGAGAAGAACGAGGCTGTTAGAAGCCAAGACTTTGAAAAGGCTGGGGAGTTACGTGACAAAGAAATGGACCTAAAGGCACAGATCACAGCTGTTGTTGATAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTCCTCTCGTGACCGAAGTGGATATTCAACATATTGTGTCCTCCTGGACTGGAATTCCAGTTGAGAAAGTGTCCACCGATGAATCAGACCGCCTCCTCAAGATGGAAGAGACCCTCCATAAGAGAGTGATTGGTCAGGATGAAGCAGTCAAGGCTATTAGTCGTGCTATTCGCCGAGCCCGTGTTGGACTGAAGAATCCTAATCGTCCTATTGCCAGTTTCATCTTTTCTGGTCCAACTGGTGTTGGGAAATCTGAGCTCGCAAAAGCTTTGGCTGCTTACTACTTTGGTTCTGAAGAAGCCATGATTCGGCTTGATATGAGTGAGTTTATGGAGAGGCACACTGTTTCCAAGCTCATTGGTTCTCCCCCGGGTTATGTTGGTTACACCGAGGGAGGTCAGCTGACTGAAGCCGTTCGACGCCGTCCTTACACTGTGGTGCTTTTTGATGAAATTGAGAAGGCACATCCCGATGTATTCAACATGATGCTTCAAATACTCGAGGATGGAAGATTAACCGACAGCAAGGGCAGAACCGTGGATTTCAAGAATACACTTCTGATAATGACATCTAACGTCGGAAGCAGTGTTATTGAGAAGGGAGGCCGACGCATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAATAGAATTAAGAGCTTGGTGACAGAGGAACTAAAACAATACTTCAGACCCGAGTTCTTGAACAGGTTGGACGAAATGATTGTTTTCCGTCAACTCACCAAGCTGGAGGTAAAGGATATAGCAGATATAATGCTCAAGGAGGTATTCGAAAGGTTGAAGAAGAAGGAGATAGAGCTTCAAGTGACGGAGAGGTTCAGAGACAGAGTGGTTGACGAAGGATACAACCCGAGCTACGGAGCCAGGCCTCTAAGAAGAGCGATCGATGAGACTGTTGGAGGACAGCATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

846

Amino Acids

94.33

Weight (kDa)

6.77

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	4 cut(s)	695, 1062, 1267, 1684
AclWI	GGATC	3 cut(s)	551, 707, 720
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	6 cut(s)	116, 399, 544, 756, 1221, 1647
AcuI	CTGAAG	6 cut(s)	1065, 1425, 1805, 1908, 2022, 2275
AcyI	GRCGYC	1 cut(s)	2014
AfaI	GTAC	5 cut(s)	10, 256, 925, 932, 1316
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	6 cut(s)	722, 760, 809, 1696, 1902, 2480
AflIII	ACRYGT	1 cut(s)	745
AgeI	ACCGGT	1 cut(s)	293
AjnI	CCWGG	5 cut(s)	89, 802, 1284, 1637, 2486
AjuI	GAANNNNNNNTTGG	4 cut(s)	351, 383, 792, 824
AleI	CACNNNNGTG	1 cut(s)	2030
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
Alw21I	GWGCWC	4 cut(s)	22, 605, 1020, 1854
Alw26I	GTCTC	3 cut(s)	1697, 2439, 2507
Alw44I	GTGCAC	1 cut(s)	1016
AlwI	GGATC	3 cut(s)	551, 707, 720
AlwNI	CAGNNNCTG	1 cut(s)	611
Ama87I	CYCGRG	5 cut(s)	1374, 1963, 2093, 2297, 2473
Aor13HI	TCCGGA	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	3 cut(s)	787, 2197, 2489
ApaLI	GTGCAC	1 cut(s)	1016
ApeKI	GCWGC	5 cut(s)	302, 527, 1040, 1295, 1868
ApoI	RAATTY	6 cut(s)	116, 399, 544, 756, 1221, 1647
AsiGI	ACCGGT	1 cut(s)	293
Asp700I	GAANNNNTTC	2 cut(s)	1215, 2007
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
AsuC2I	CCSGG	3 cut(s)	786, 1964, 1965
AsuHPI	GGTGA	9 cut(s)	124, 296, 527, 608, 869, 1106, 1247, 2278, 2335
AsuII	TTCGAA	1 cut(s)	2394
AsuNHI	GCTAGC	1 cut(s)	691
AvaI	CYCGRG	5 cut(s)	1374, 1963, 2093, 2297, 2473
AvaII	GGWCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
BaeGI	GKGCMC	1 cut(s)	1020
BamHI	GGATCC	1 cut(s)	712
BanII	GRGCYC	2 cut(s)	1774, 1854
BauI	CACGAG	4 cut(s)	345, 414, 531, 1601
BbsI	GAAGAC	3 cut(s)	733, 821, 902
Bbv12I	GWGCWC	4 cut(s)	22, 605, 1020, 1854
BbvCI	CCTCAGC	1 cut(s)	1433
BbvI	GCAGC	5 cut(s)	289, 539, 1052, 1282, 1855
BccI	CCATC	2 cut(s)	1690, 2093
BceAI	ACGGC	3 cut(s)	774, 1991, 2001
BciT130I	CCWGG	5 cut(s)	91, 804, 1286, 1639, 2488
BciVI	GTATCC	1 cut(s)	2459
BcnI	CCSGG	3 cut(s)	786, 1964, 1965
BcoDI	GTCTC	3 cut(s)	1697, 2439, 2507
BfaI	CTAG	5 cut(s)	236, 561, 662, 692, 1413
BfmI	CTRYAG	1 cut(s)	1100
BfoI	RGCGCY	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	2459
BisI	GCNGC	6 cut(s)	303, 528, 1041, 1062, 1296, 1869
BlpI	GCTNAGC	1 cut(s)	1299
BlsI	GCNGC	6 cut(s)	304, 529, 1042, 1063, 1297, 1870
Bme1390I	CCNGG	8 cut(s)	91, 786, 804, 1286, 1639, 1964, 1965, 2488
Bme18I	GGWCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
BmeT110I	CYCGRG	5 cut(s)	1374, 1963, 2093, 2297, 2473
BmgT120I	GGNCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
BmiI	GGNNCC	7 cut(s)	292, 481, 637, 676, 714, 1114, 2485
BmrFI	CCNGG	8 cut(s)	91, 786, 804, 1286, 1639, 1964, 1965, 2488
BmsI	GCATC	3 cut(s)	331, 1048, 2070
BmtI	GCTAGC	1 cut(s)	695
BpiI	GAAGAC	3 cut(s)	733, 821, 902
BpmI	CTGGAG	2 cut(s)	464, 2372
Bpu10I	CCTNAGC	1 cut(s)	1433
Bpu1102I	GCTNAGC	1 cut(s)	1299
Bpu14I	TTCGAA	1 cut(s)	2394
BpuEI	CTTGAG	4 cut(s)	560, 1442, 1676, 2366
BpuMI	CCSGG	3 cut(s)	786, 1964, 1965
Bsa29I	ATCGAT	1 cut(s)	2508
BsaAI	YACGTR	1 cut(s)	1502
BsaHI	GRCGYC	1 cut(s)	2014
BsaI	GGTCTC	1 cut(s)	1697
BsaWI	WCCGGW	2 cut(s)	54, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	6 cut(s)	722, 760, 809, 1696, 1902, 2480
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	9 cut(s)	447, 639, 859, 1181, 1312, 1648, 1652, 1809, 1837
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	5 cut(s)	91, 804, 1286, 1639, 2488
BseCI	ATCGAT	1 cut(s)	2508
BseGI	GGATG	4 cut(s)	1213, 1738, 2059, 2104
BseLI	CCNNNNNNNGG	6 cut(s)	722, 760, 809, 1696, 1902, 2480
BseMII	CTCAG	4 cut(s)	249, 1313, 1424, 1839
BseNI	ACTGG	9 cut(s)	447, 639, 859, 1181, 1312, 1648, 1652, 1809, 1837
BseRI	GAGGAG	4 cut(s)	402, 645, 713, 1679
BseSI	GKGCMC	1 cut(s)	1020
BseX3I	CGGCCG	1 cut(s)	787
BseXI	GCAGC	5 cut(s)	289, 539, 1052, 1282, 1855
BseYI	CCCAGC	1 cut(s)	1490
Bsh1285I	CGRYCG	2 cut(s)	790, 2508
BshFI	GGCC	3 cut(s)	789, 2199, 2491
BshTI	ACCGGT	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	2508
BsiEI	CGRYCG	2 cut(s)	790, 2508
BsiHKAI	GWGCWC	4 cut(s)	22, 605, 1020, 1854
BsiHKCI	CYCGRG	5 cut(s)	1374, 1963, 2093, 2297, 2473
BsiSI	CCGG	4 cut(s)	55, 294, 786, 1964
BslFI	GGGAC	3 cut(s)	304, 649, 688
BslI	CCNNNNNNNGG	6 cut(s)	722, 760, 809, 1696, 1902, 2480
BsmAI	GTCTC	3 cut(s)	1697, 2439, 2507
BsmFI	GGGAC	3 cut(s)	304, 649, 688
BsnI	GGCC	3 cut(s)	789, 2199, 2491
Bso31I	GGTCTC	1 cut(s)	1697
BsoBI	CYCGRG	5 cut(s)	1374, 1963, 2093, 2297, 2473
Bsp119I	TTCGAA	1 cut(s)	2394
Bsp1286I	GDGCHC	5 cut(s)	22, 605, 1020, 1774, 1854
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
Bsp1720I	GCTNAGC	1 cut(s)	1299
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	4 cut(s)	695, 1062, 1267, 1684
BspANI	GGCC	3 cut(s)	789, 2199, 2491
BspCNI	CTCAG	4 cut(s)	250, 1312, 1425, 1840
BspDI	ATCGAT	1 cut(s)	2508
BspEI	TCCGGA	1 cut(s)	54
BspLI	GGNNCC	7 cut(s)	292, 481, 637, 676, 714, 1114, 2485
BspMAI	CTGCAG	1 cut(s)	1104
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	551, 707, 720
BspQI	GCTCTTC	1 cut(s)	2494
BspT104I	TTCGAA	1 cut(s)	2394
BspTNI	GGTCTC	1 cut(s)	1697
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	9 cut(s)	447, 639, 859, 1181, 1312, 1648, 1652, 1809, 1837
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
BssNI	GRCGYC	1 cut(s)	2014
BssSI	CACGAG	4 cut(s)	345, 414, 531, 1601
BssT1I	CCWWGG	2 cut(s)	306, 321
Bst2BI	CACGAG	4 cut(s)	345, 414, 531, 1601
Bst2UI	CCWGG	5 cut(s)	91, 804, 1286, 1639, 2488
Bst4CI	ACNGT	7 cut(s)	112, 935, 1204, 1939, 2029, 2131, 2518
Bst6I	CTCTTC	2 cut(s)	1695, 2494
BstACI	GRCGYC	1 cut(s)	2014
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstBAI	YACGTR	1 cut(s)	1502
BstBI	TTCGAA	1 cut(s)	2394
BstC8I	GCNNGC	5 cut(s)	148, 213, 454, 693, 1854
BstDEI	CTNAG	7 cut(s)	258, 687, 1235, 1299, 1433, 1848, 2495
BstDSI	CCRYGG	4 cut(s)	321, 934, 1203, 2130
BstF5I	GGATG	4 cut(s)	1213, 1738, 2059, 2104
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	6 cut(s)	559, 715, 1156, 1327, 1533, 2508
BstMAI	GTCTC	3 cut(s)	1697, 2439, 2507
BstMBI	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
BstMCI	CGRYCG	2 cut(s)	790, 2508
BstMWI	GCNNNNNNNGC	7 cut(s)	617, 1040, 1049, 1058, 1240, 1745, 1868
BstNI	CCWGG	5 cut(s)	91, 804, 1286, 1639, 2488
BstSCI	CCNGG	8 cut(s)	89, 784, 802, 1284, 1637, 1962, 1963, 2486
BstSFI	CTRYAG	1 cut(s)	1100
BstSLI	GKGCMC	1 cut(s)	1020
BstV1I	GCAGC	5 cut(s)	289, 539, 1052, 1282, 1855
BstV2I	GAAGAC	3 cut(s)	733, 821, 902
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	787
Bsu15I	ATCGAT	1 cut(s)	2508
BsuI	GTATCC	1 cut(s)	2459
BsuRI	GGCC	3 cut(s)	789, 2199, 2491
BsuTUI	ATCGAT	1 cut(s)	2508
BtgI	CCRYGG	4 cut(s)	321, 934, 1203, 2130
BtsCI	GGATG	4 cut(s)	1213, 1738, 2059, 2104
BtsI	GCAGTG	2 cut(s)	1109, 2185
BtsIMutI	CAGTG	8 cut(s)	440, 646, 1109, 1272, 1327, 1935, 2025, 2185
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	5 cut(s)	148, 213, 454, 693, 1854
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
Cfr9I	CCCGGG	1 cut(s)	1963
ClaI	ATCGAT	1 cut(s)	2508
CseI	GACGC	2 cut(s)	2022, 2211
CsiI	ACCWGGT	1 cut(s)	802
Csp6I	GTAC	5 cut(s)	9, 255, 924, 931, 1315
CspAI	ACCGGT	1 cut(s)	293
CviAII	CATG	7 cut(s)	95, 169, 322, 1391, 1897, 2077, 2531
CviQI	GTAC	5 cut(s)	9, 255, 924, 931, 1315
DdeI	CTNAG	7 cut(s)	258, 687, 1235, 1299, 1433, 1848, 2495
DpnI	GATC	6 cut(s)	558, 714, 1155, 1326, 1532, 2507
DpnII	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
EaeI	YGGCCR	1 cut(s)	787
EagI	CGGCCG	1 cut(s)	787
Eam1104I	CTCTTC	2 cut(s)	1695, 2494
EarI	CTCTTC	2 cut(s)	1695, 2494
Ecl136II	GAGCTC	1 cut(s)	1852
EclXI	CGGCCG	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	306, 321
Eco147I	AGGCCT	1 cut(s)	2491
Eco24I	GRGCYC	2 cut(s)	1774, 1854
Eco31I	GGTCTC	1 cut(s)	1697
Eco47I	GGWCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
Eco47III	AGCGCT	1 cut(s)	179
Eco52I	CGGCCG	1 cut(s)	787
Eco53kI	GAGCTC	1 cut(s)	1852
Eco57I	CTGAAG	6 cut(s)	1065, 1425, 1805, 1908, 2022, 2275
Eco88I	CYCGRG	5 cut(s)	1374, 1963, 2093, 2297, 2473
EcoICRI	GAGCTC	1 cut(s)	1852
EcoO109I	RGGNCCY	1 cut(s)	1595
EcoRI	GAATTC	1 cut(s)	1647
EcoRII	CCWGG	5 cut(s)	89, 802, 1284, 1637, 2486
EcoT14I	CCWWGG	2 cut(s)	306, 321
EcoT38I	GRGCYC	2 cut(s)	1774, 1854
ErhI	CCWWGG	2 cut(s)	306, 321
FaeI	CATG	7 cut(s)	98, 172, 325, 1394, 1900, 2080, 2534
FaqI	GGGAC	3 cut(s)	304, 649, 688
FatI	CATG	7 cut(s)	94, 168, 321, 1390, 1896, 2076, 2530
Fnu4HI	GCNGC	6 cut(s)	303, 528, 1041, 1062, 1296, 1869
FokI	GGATG	4 cut(s)	1220, 1745, 2046, 2111
FriOI	GRGCYC	2 cut(s)	1774, 1854
Fsp4HI	GCNGC	6 cut(s)	303, 528, 1041, 1062, 1296, 1869
FspBI	CTAG	5 cut(s)	236, 561, 662, 692, 1413
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	6 cut(s)	303, 528, 1041, 1062, 1296, 1869
GsaI	CCCAGC	1 cut(s)	1494
GsuI	CTGGAG	2 cut(s)	464, 2372
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	789, 2199, 2491
HapII	CCGG	4 cut(s)	55, 294, 786, 1964
HgaI	GACGC	2 cut(s)	2022, 2211
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	2014
Hin1II	CATG	7 cut(s)	98, 172, 325, 1394, 1900, 2080, 2534
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	2339, 2458
HindII	GTYRAC	2 cut(s)	2339, 2458
HindIII	AAGCTT	1 cut(s)	1860
HinfI	GANTC	8 cut(s)	51, 327, 658, 1173, 1252, 1676, 1789, 1900
HpaII	CCGG	4 cut(s)	55, 294, 786, 1964
HphI	GGTGA	9 cut(s)	124, 296, 527, 608, 869, 1106, 1247, 2278, 2335
Hpy166II	GTNNAC	6 cut(s)	140, 1018, 1097, 1668, 2339, 2458
Hpy188I	TCNGA	8 cut(s)	484, 1681, 1849, 1888, 2154, 2174, 2294, 2444
Hpy8I	GTNNAC	6 cut(s)	140, 1018, 1097, 1668, 2339, 2458
Hpy99I	CGWCG	5 cut(s)	112, 138, 2016, 2174, 2205
HpyCH4III	ACNGT	7 cut(s)	112, 935, 1204, 1939, 2029, 2131, 2518
HpyCH4IV	ACGT	4 cut(s)	133, 745, 1501, 2169
HpyF10VI	GCNNNNNNNGC	7 cut(s)	617, 1040, 1049, 1058, 1240, 1745, 1868
HpyF3I	CTNAG	7 cut(s)	258, 687, 1235, 1299, 1433, 1848, 2495
HpySE526I	ACGT	4 cut(s)	133, 745, 1501, 2169
Hsp92I	GRCGYC	1 cut(s)	2014
Hsp92II	CATG	7 cut(s)	98, 172, 325, 1394, 1900, 2080, 2534
HspAI	GCGC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
LguI	GCTCTTC	1 cut(s)	2494
LmnI	GCTCC	7 cut(s)	433, 485, 1031, 1037, 1112, 1269, 2483
Lsp1109I	GCAGC	5 cut(s)	289, 539, 1052, 1282, 1855
LweI	GCATC	3 cut(s)	331, 1048, 2070
MabI	ACCWGGT	1 cut(s)	802
MaeI	CTAG	5 cut(s)	236, 561, 662, 692, 1413
MaeII	ACGT	4 cut(s)	133, 745, 1501, 2169
MalI	GATC	6 cut(s)	558, 714, 1155, 1326, 1532, 2507
MboI	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
MfeI	CAATTG	3 cut(s)	822, 1053, 1347
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	5 cut(s)	22, 605, 1020, 1774, 1854
MlyI	GAGTC	2 cut(s)	45, 652
MmeI	TCCRAC	9 cut(s)	607, 690, 703, 1201, 1759, 1853, 2152, 2295, 2500
MroI	TCCGGA	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	1215, 2007
MseI	TTAA	8 cut(s)	63, 198, 336, 956, 1025, 1073, 2108, 2256
MslI	CAYNNNNRTG	2 cut(s)	2030, 2064
MspA1I	CMGCKG	3 cut(s)	1043, 1538, 1996
MspI	CCGG	4 cut(s)	55, 294, 786, 1964
MspR9I	CCNGG	8 cut(s)	91, 786, 804, 1286, 1639, 1964, 1965, 2488
MunI	CAATTG	3 cut(s)	822, 1053, 1347
MvaI	CCWGG	5 cut(s)	91, 804, 1286, 1639, 2488
MwoI	GCNNNNNNNGC	7 cut(s)	617, 1040, 1049, 1058, 1240, 1745, 1868
NciI	CCSGG	3 cut(s)	786, 1964, 1965
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
NheI	GCTAGC	1 cut(s)	691
NlaIII	CATG	7 cut(s)	98, 172, 325, 1394, 1900, 2080, 2534
NlaIV	GGNNCC	7 cut(s)	292, 481, 637, 676, 714, 1114, 2485
NmeAIII	GCCGAG	1 cut(s)	1793
NmuCI	GTSAC	6 cut(s)	239, 438, 1502, 1603, 2266, 2428
NspV	TTCGAA	1 cut(s)	2394
OliI	CACNNNNGTG	1 cut(s)	2030
PaeR7I	CTCGAG	2 cut(s)	1374, 2093
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	2491
PciSI	GCTCTTC	1 cut(s)	2494
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 421, 1771
PdmI	GAANNNNTTC	2 cut(s)	1215, 2007
PfeI	GAWTC	6 cut(s)	327, 1173, 1252, 1676, 1789, 1900
PflFI	GACNNNGTC	2 cut(s)	237, 2016
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	1637
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	304, 529, 1042, 1063, 1297, 1870
Ple19I	CGATCG	1 cut(s)	2508
PleI	GAGTC	2 cut(s)	45, 652
PpsI	GAGTC	2 cut(s)	45, 652
Ppu21I	YACGTR	1 cut(s)	1502
PpuMI	RGGWCCY	1 cut(s)	1595
PsiI	TTATAA	1 cut(s)	893
Psp124BI	GAGCTC	1 cut(s)	1854
Psp5II	RGGWCCY	1 cut(s)	1595
Psp6I	CCWGG	5 cut(s)	89, 802, 1284, 1637, 2486
PspFI	CCCAGC	1 cut(s)	1490
PspGI	CCWGG	5 cut(s)	89, 802, 1284, 1637, 2486
PspN4I	GGNNCC	7 cut(s)	292, 481, 637, 676, 714, 1114, 2485
PspPI	GGNCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
PspPPI	RGGWCCY	1 cut(s)	1595
PspXI	VCTCGAGB	1 cut(s)	2093
PstI	CTGCAG	1 cut(s)	1104
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	712
PsyI	GACNNNGTC	2 cut(s)	237, 2016
PvuI	CGATCG	1 cut(s)	2508
PvuII	CAGCTG	3 cut(s)	1043, 1538, 1996
RsaI	GTAC	5 cut(s)	10, 256, 925, 932, 1316
RsaNI	GTAC	5 cut(s)	9, 255, 924, 931, 1315
RseI	CAYNNNNRTG	2 cut(s)	2030, 2064
SacI	GAGCTC	1 cut(s)	1854
SapI	GCTCTTC	1 cut(s)	2494
SaqAI	TTAA	8 cut(s)	63, 198, 336, 956, 1025, 1073, 2108, 2256
SatI	GCNGC	6 cut(s)	303, 528, 1041, 1062, 1296, 1869
Sau3AI	GATC	6 cut(s)	556, 712, 1153, 1324, 1530, 2505
Sau96I	GGNCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
SchI	GAGTC	2 cut(s)	45, 652
ScrFI	CCNGG	8 cut(s)	91, 786, 804, 1286, 1639, 1964, 1965, 2488
SduI	GDGCHC	5 cut(s)	22, 605, 1020, 1774, 1854
SexAI	ACCWGGT	1 cut(s)	802
SfaNI	GCATC	3 cut(s)	331, 1048, 2070
SfcI	CTRYAG	1 cut(s)	1100
Sfr274I	CTCGAG	2 cut(s)	1374, 2093
SfuI	TTCGAA	1 cut(s)	2394
SinI	GGWCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
SlaI	CTCGAG	2 cut(s)	1374, 2093
SmaI	CCCGGG	1 cut(s)	1965
SmiMI	CAYNNNNRTG	2 cut(s)	2030, 2064
SmlI	CTYRAG	6 cut(s)	539, 1374, 1421, 1691, 2093, 2381
SmoI	CTYRAG	6 cut(s)	539, 1374, 1421, 1691, 2093, 2381
SseBI	AGGCCT	1 cut(s)	2491
SsiI	CCGC	4 cut(s)	695, 1062, 1267, 1684
SspMI	CTAG	5 cut(s)	236, 561, 662, 692, 1413
SstI	GAGCTC	1 cut(s)	1854
StuI	AGGCCT	1 cut(s)	2491
StyD4I	CCNGG	8 cut(s)	89, 784, 802, 1284, 1637, 1962, 1963, 2486
StyI	CCWWGG	2 cut(s)	306, 321
TaaI	ACNGT	7 cut(s)	112, 935, 1204, 1939, 2029, 2131, 2518
TaiI	ACGT	4 cut(s)	136, 748, 1504, 2172
TaqI	TCGA	8 cut(s)	107, 1125, 1156, 1375, 2011, 2094, 2394, 2508
TaqII	GACCGA	1 cut(s)	1622
TatI	WGTACW	2 cut(s)	8, 1314
TauI	GCSGC	1 cut(s)	1064
TfiI	GAWTC	6 cut(s)	327, 1173, 1252, 1676, 1789, 1900
Tru1I	TTAA	8 cut(s)	63, 198, 336, 956, 1025, 1073, 2108, 2256
Tru9I	TTAA	8 cut(s)	63, 198, 336, 956, 1025, 1073, 2108, 2256
TscAI	CASTG	8 cut(s)	447, 646, 1109, 1279, 1327, 1942, 2032, 2185
TseFI	GTSAC	6 cut(s)	239, 438, 1502, 1603, 2266, 2428
TseI	GCWGC	5 cut(s)	302, 527, 1040, 1295, 1868
Tsp45I	GTSAC	6 cut(s)	239, 438, 1502, 1603, 2266, 2428
TspDTI	ATGAA	8 cut(s)	1143, 1224, 1293, 1377, 1689, 1749, 1804, 2058
TspGWI	ACGGA	4 cut(s)	859, 2324, 2447, 2496
TspMI	CCCGGG	1 cut(s)	1963
TspRI	CASTG	8 cut(s)	447, 646, 1109, 1279, 1327, 1942, 2032, 2185
Tth111I	GACNNNGTC	2 cut(s)	237, 2016
Van91I	CCANNNNNTGG	1 cut(s)	760
VneI	GTGCAC	1 cut(s)	1016
VpaK11BI	GGWCC	7 cut(s)	291, 636, 675, 771, 1516, 1595, 1826
XapI	RAATTY	6 cut(s)	116, 399, 544, 756, 1221, 1647
XbaI	TCTAGA	1 cut(s)	661
XhoI	CTCGAG	2 cut(s)	1374, 2093
XmaI	CCCGGG	1 cut(s)	1963
XmnI	GAANNNNTTC	2 cut(s)	1215, 2007
XspI	CTAG	5 cut(s)	236, 561, 662, 692, 1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.