Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

52023806 .. 52024104

Gene Structure 299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCTGAAGGAGGTTTCCGAAAGGCTGAAGACTAAAGAGAAAGAGCTTCAAGTGACAGAGAGGTTCAGGGATAGCTTGGTTGATGAAGGATACAACCCAAGCTATGGGGCAAGGCCTCTAAGAAGAGCCATAATGAGACTTTTGGAGGACAACATGGCTGAGAAGATGCTAGCAAGGGAAATCAAAGAGGGCGACACAGTTATTGTGAATGTCGATTATGATGGGAATGTAATTGTGCTCAATCAGTGGTTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

85

Amino Acids

9.96

Weight (kDa)

5.18

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	1 - 69	4.8e-22	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	26, 47
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	3 cut(s)	46, 75, 102
AluI	AGCT	3 cut(s)	46, 75, 102
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	119, 159
BstMAI	GTCTC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	171
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	7 cut(s)	25, 46, 75, 102, 115, 128, 158
CviKI_1	RGCY	7 cut(s)	25, 46, 75, 102, 115, 128, 158
DdeI	CTNAG	2 cut(s)	119, 159
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	26, 47
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	105, 131, 155, 219
FatI	CATG	1 cut(s)	153
FspBI	CTAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	119, 159
Hsp92II	CATG	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	118
LpnPI	CCDG	1 cut(s)	52
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	40, 135, 175
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	5 cut(s)	4, 54, 126, 139, 181
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	5 cut(s)	15, 48, 65, 77, 104
SfaNI	GCATC	1 cut(s)	156
SgeI	CNNG	8 cut(s)	62, 79, 88, 111, 123, 166, 182, 186
Sse9I	AATT	1 cut(s)	231
SseBI	AGGCCT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	231
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.