Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

49418327 .. 49419103

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGCAAGGCTGAGAGCGAAGCAGGGGATGTAGGACCTATGGTAACTGAAGTGGATATTCAACATATCGTGTTCTCTTGGACTGGTATTCCTGTTGACAAAGTGTCAGCTGATGAATCGGATCGCCTTCTCAAGATGGAAGAGACCCTCCATAAGCAGGTTATTGGACAGGATGAAGCAGTCAAGGCTATTAGTCGTGCTATTCGCCGAGGCCGTGTTGGACTCAGATATCCTAATCATCCAATTGCCAGTTTCATCTTTTCTGGTCCAACCGGTGGAAAATCCGAACTCGCAAAAGCTTTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTTGCCTTGATATGAGTGAATTTATGGAACGGCACTCTGTTTCAAAGCTTATTGGTTCTCCCCCTGGTTATGTTGGTTACACTGATGGAGGTCAGCTGACTGAAGCCGTTAGACGCCGTCCTTACACTGTGGTGCTATTTGATGAGATTGAGAAGGCTGATCCAGATGTCTTAAATATGATGCTTCAAATTCTTGAGGATGGAATTCTTGAGGATGGAAGATTGACTGACAGCAAGGGCAGAACTGTGGATTTCAAGAATACACTTCTGATCATGACATCTAATGTCGGAAGCAGTGTAATTGAGAAAGGAGGACTCCGTGTAGGATTTGATCTTGATTACAATGAGAATGATAGCAGTCACAATCGCATCAAGAGCTCAGTGACAGAGGAGCTAAAACAACAATTTAGACCTGAGTTCCTAAATAGGTTGGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

258

Amino Acids

28.68

Weight (kDa)

4.99

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	81 - 258	4.5e-62	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	85 - 210	1.8e-07	AAA domain (dynein-related subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	275
AclWI	GGATC	2 cut(s)	129, 491
AcsI	RAATTY	3 cut(s)	356, 525, 540
AcuI	CTGAAG	3 cut(s)	69, 345, 459
AcyI	GRCGYC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	157, 275
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	62, 381, 524, 592
AhdI	GACNNNNNGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	400
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	6 cut(s)	110, 299, 385, 433, 714, 730
AluI	AGCT	6 cut(s)	110, 299, 385, 433, 714, 730
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	129, 491
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	3 cut(s)	356, 525, 540
AsiGI	ACCGGT	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	35, 266
AvaII	GGWCC	2 cut(s)	35, 266
BanII	GRGCYC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	4 cut(s)	130, 416, 530, 545
BceAI	ACGGC	4 cut(s)	198, 383, 428, 438
BciT130I	CCWGG	1 cut(s)	402
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	2 cut(s)	35, 266
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	35, 266
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	507, 714
BpuEI	CTTGAG	3 cut(s)	116, 551, 566
BsaHI	GRCGYC	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	208, 400
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 275
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	88, 249
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	208, 400
BseGI	GGATG	6 cut(s)	34, 178, 238, 541, 556, 775
BseLI	CCNNNNNNNGG	2 cut(s)	157, 275
BseMII	CTCAG	3 cut(s)	238, 729, 741
BseNI	ACTGG	2 cut(s)	88, 249
BseRI	GAGGAG	1 cut(s)	740
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	157, 275
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	4 cut(s)	121, 496, 606, 667
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	4 cut(s)	4, 237, 728, 742
BspHI	TCATGA	1 cut(s)	609
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	129, 491
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	88, 249
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	208, 400
BssMI	GATC	4 cut(s)	121, 496, 606, 667
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	466, 583
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	12, 224, 715, 750
BstF5I	GGATG	6 cut(s)	34, 178, 238, 541, 556, 775
BstKTI	GATC	4 cut(s)	124, 499, 609, 670
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	121, 496, 606, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 305, 711
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	6 cut(s)	34, 178, 238, 541, 556, 775
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	4 cut(s)	417, 462, 637, 723
BveI	ACCTGC	1 cut(s)	148
CciI	TCATGA	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	35, 266
CseI	GACGC	1 cut(s)	459
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	2 cut(s)	334, 610
DdeI	CTNAG	4 cut(s)	12, 224, 715, 750
DpnI	GATC	4 cut(s)	123, 498, 608, 669
DpnII	GATC	4 cut(s)	121, 496, 606, 667
DriI	GACNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	716
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	35, 266
Eco53kI	GAGCTC	1 cut(s)	714
Eco57I	CTGAAG	3 cut(s)	69, 345, 459
EcoICRI	GAGCTC	1 cut(s)	714
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	716
FaeI	CATG	2 cut(s)	337, 613
FatI	CATG	2 cut(s)	333, 609
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	5 cut(s)	41, 185, 225, 548, 563
FriOI	GRGCYC	1 cut(s)	716
Fsp4HI	GCNGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	459
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	337, 613
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	297, 383
HinfI	GANTC	3 cut(s)	116, 222, 651
HpaII	CCGG	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	121, 227, 286, 325, 606, 626
Hpy188III	TCNNGA	8 cut(s)	133, 500, 530, 545, 592, 610, 671, 709
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	137, 484
HpyCH4III	ACNGT	2 cut(s)	466, 583
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 305, 711
HpyF3I	CTNAG	4 cut(s)	12, 224, 715, 750
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	2 cut(s)	337, 613
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	121, 496, 606, 667
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	507, 714
MaeIII	GTNAC	4 cut(s)	43, 413, 695, 718
MalI	GATC	4 cut(s)	123, 498, 608, 669
MboI	GATC	4 cut(s)	121, 496, 606, 667
MboII	GAAGA	3 cut(s)	152, 338, 567
MfeI	CAATTG	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	716
MluCI	AATT	6 cut(s)	243, 356, 525, 540, 636, 740
MlyI	GAGTC	2 cut(s)	216, 645
MmeI	TCCRAC	4 cut(s)	199, 293, 604, 747
MnlI	CCTC	7 cut(s)	158, 203, 419, 526, 541, 641, 718
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	2 cut(s)	110, 433
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	185, 305, 711
NdeII	GATC	4 cut(s)	121, 496, 606, 667
NlaIII	CATG	2 cut(s)	337, 613
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	695, 718
OliI	CACNNNNGTG	1 cut(s)	467
PagI	TCATGA	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	116
PflFI	GACNNNGTC	1 cut(s)	453
PflMI	CCANNNNNTGG	1 cut(s)	275
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	216, 645
PpsI	GAGTC	2 cut(s)	216, 645
PpuMI	RGGWCCY	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	716
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	35, 266
PspPPI	RGGWCCY	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	453
PvuII	CAGCTG	2 cut(s)	110, 433
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	716
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	121, 496, 606, 667
Sau96I	GGNCC	2 cut(s)	35, 266
SchI	GAGTC	2 cut(s)	216, 645
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	2 cut(s)	507, 714
SinI	GGWCC	2 cut(s)	35, 266
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	3 cut(s)	131, 530, 545
SmoI	CTYRAG	3 cut(s)	131, 530, 545
Sse9I	AATT	6 cut(s)	243, 356, 525, 540, 636, 740
SstI	GAGCTC	1 cut(s)	716
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	466, 583
TasI	AATT	6 cut(s)	243, 356, 525, 540, 636, 740
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	4 cut(s)	424, 469, 637, 723
TseFI	GTSAC	2 cut(s)	695, 718
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	695, 718
TspDTI	ATGAA	3 cut(s)	129, 189, 244
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	4 cut(s)	424, 469, 637, 723
Tth111I	GACNNNGTC	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	35, 266
XapI	RAATTY	3 cut(s)	356, 525, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.