Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

61201724 .. 61203966

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0494700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGACAATTACTCGAGAACGAGCTCTCTATCATTGGGCGAGAAGCTGTGCGCGGCGTTTATACCGTTTGTAGCGATCATAGAGGTGTTGGTTTTGGCCGTCACCGATTGCTTCACTTACCGGCCTCGCCCTGTCAAACGTGCTTACGCTTTCGGAGACATGACTCAGCTCGCCCGGGAAACTCGATTTAGTGTTAATGAGCTGGAGGCGTTGTATGAGCTGTTTAAGAAGTTGAGTAGCTCGATCATCGACGACGGGTTGATTCACAAGGAAGAGCTTCAATTAGCACTGTTCCAAACTCCCCAGGGCGAAAATCTTTTCCTTGACCGGGTGTTTGATCTGTTTGACGAGAAGAAAAATGGTGTCATTGAATTCGATGAGTTCATTCACGCGCTCAATGTGTTTCATCCCTATGCTCCTATACAGGAGAAGATTGATTTTGCATTTAGGCTGTATGATCTGAGACATACTGGATTCATTGAGCGTGAAGAAGTTAAGCAAATGGTGATTGCTATACTGATGGAGTCTGACACAATACTGTCAGATGATCTTCTGGAGGCTATCATTGATAAGACATTTGATGACGCTGATGCCGACAAGGATGGGAGAATCAATAAACAAGAATGGAAGGCTTTTGTGCTTCGACATCCAGCCCTTCTGAAAAACATGACTCTTCCTTATTTGAAGGAAATCACCACAATGTTTCCAAGTTTCATTTTCAACACCGAAGTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

246

Amino Acids

28.53

Weight (kDa)

4.75

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	143 - 210	4.3e-11	EF-hand domain pair
EF-hand_1	PF00036	189 - 213	8.3e-06	EF hand domain
EF-hand_5	PF13202	189 - 213	3.7e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 392
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	281, 371, 685, 721, 734
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	7 cut(s)	24, 46, 169, 202, 220, 240, 277
AluI	AGCT	7 cut(s)	24, 46, 169, 202, 220, 240, 277
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	150, 457
Ama87I	CYCGRG	2 cut(s)	13, 174
AoxI	GGCC	2 cut(s)	96, 122
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	53, 394
AsuC2I	CCSGG	3 cut(s)	175, 176, 329
AsuHPI	GGTGA	3 cut(s)	94, 517, 685
AvaI	CYCGRG	2 cut(s)	13, 174
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BccI	CCATC	2 cut(s)	514, 596
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	3 cut(s)	175, 176, 329
BcoDI	GTCTC	2 cut(s)	150, 457
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	175, 176, 305, 329
BmeT110I	CYCGRG	2 cut(s)	13, 174
BmrFI	CCNGG	4 cut(s)	175, 176, 305, 329
BmsI	GCATC	1 cut(s)	580
BpmI	CTGGAG	2 cut(s)	224, 575
BpuMI	CCSGG	3 cut(s)	175, 176, 329
BsaJI	CCNNGG	3 cut(s)	174, 303, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	174, 303, 304
BseGI	GGATG	3 cut(s)	406, 607, 646
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	179, 452
BseNI	ACTGG	1 cut(s)	475
Bsh1236I	CGCG	2 cut(s)	53, 392
BshFI	GGCC	2 cut(s)	98, 124
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	2 cut(s)	13, 174
BsiSI	CCGG	3 cut(s)	121, 175, 328
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	150, 457
BsnI	GGCC	2 cut(s)	98, 124
BsoBI	CYCGRG	2 cut(s)	13, 174
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	75, 243, 337, 457, 547
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	98, 124
BspCNI	CTCAG	2 cut(s)	178, 453
BspFNI	CGCG	2 cut(s)	53, 392
BspQI	GCTCTTC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	174, 303, 304
BssMI	GATC	5 cut(s)	75, 243, 337, 457, 547
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	66, 291, 540
Bst6I	CTCTTC	2 cut(s)	267, 678
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	165, 461
BstF5I	GGATG	3 cut(s)	406, 607, 646
BstFNI	CGCG	2 cut(s)	53, 392
BstHHI	GCGC	2 cut(s)	53, 394
BstKTI	GATC	5 cut(s)	78, 246, 340, 460, 550
BstMAI	GTCTC	2 cut(s)	150, 457
BstMBI	GATC	5 cut(s)	75, 243, 337, 457, 547
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	4 cut(s)	173, 174, 303, 327
BstUI	CGCG	2 cut(s)	53, 392
BsuRI	GGCC	2 cut(s)	98, 124
BtsCI	GGATG	3 cut(s)	406, 607, 646
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	53, 394
Cfr10I	RCCGGY	1 cut(s)	120
Cfr9I	CCCGGG	1 cut(s)	174
CseI	GACGC	1 cut(s)	593
CviAII	CATG	2 cut(s)	160, 667
DdeI	CTNAG	2 cut(s)	165, 461
DpnI	GATC	5 cut(s)	77, 245, 339, 459, 549
DpnII	GATC	5 cut(s)	75, 243, 337, 457, 547
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	267, 678
EarI	CTCTTC	2 cut(s)	267, 678
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	13, 174
EcoICRI	GAGCTC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	26
FaeI	CATG	2 cut(s)	163, 670
FatI	CATG	2 cut(s)	159, 666
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	393, 614, 633
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	2 cut(s)	52, 393
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	224, 575
HaeIII	GGCC	2 cut(s)	98, 124
HapII	CCGG	3 cut(s)	121, 175, 328
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	53, 394
Hin1II	CATG	2 cut(s)	163, 670
Hin6I	GCGC	2 cut(s)	51, 392
HinP1I	GCGC	2 cut(s)	51, 392
HinfI	GANTC	6 cut(s)	163, 262, 474, 524, 609, 670
HpaII	CCGG	3 cut(s)	121, 175, 328
HphI	GGTGA	3 cut(s)	94, 517, 685
Hpy188I	TCNGA	5 cut(s)	155, 462, 529, 544, 660
Hpy188III	TCNNGA	2 cut(s)	15, 554
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyAV	CCTTC	3 cut(s)	622, 665, 679
HpyCH4III	ACNGT	3 cut(s)	66, 291, 540
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	165, 461
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	163, 670
HspAI	GCGC	2 cut(s)	51, 392
Kzo9I	GATC	5 cut(s)	75, 243, 337, 457, 547
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	421
LweI	GCATC	1 cut(s)	580
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	5 cut(s)	77, 245, 339, 459, 549
MboI	GATC	5 cut(s)	75, 243, 337, 457, 547
MboII	GAAGA	6 cut(s)	284, 364, 442, 500, 542, 665
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	3 cut(s)	7, 281, 371
MlyI	GAGTC	3 cut(s)	157, 533, 664
MnlI	CCTC	4 cut(s)	76, 135, 199, 550
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	3 cut(s)	195, 225, 495
MslI	CAYNNNNRTG	3 cut(s)	83, 411, 698
MspI	CCGG	3 cut(s)	121, 175, 328
MspR9I	CCNGG	4 cut(s)	175, 176, 305, 329
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	2 cut(s)	53, 392
NciI	CCSGG	3 cut(s)	175, 176, 329
NdeII	GATC	5 cut(s)	75, 243, 337, 457, 547
NlaIII	CATG	2 cut(s)	163, 670
NmuCI	GTSAC	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	13
PasI	CCCWGGG	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	262, 474, 609
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	3 cut(s)	157, 532, 664
PpsI	GAGTC	3 cut(s)	157, 532, 664
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
RseI	CAYNNNNRTG	3 cut(s)	83, 411, 698
SacI	GAGCTC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	195, 225, 495
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	5 cut(s)	75, 243, 337, 457, 547
SchI	GAGTC	3 cut(s)	157, 533, 664
ScrFI	CCNGG	4 cut(s)	175, 176, 305, 329
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	9 cut(s)	26, 48, 87, 142, 171, 204, 222, 242, 279
SfaNI	GCATC	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	13
SmaI	CCCGGG	1 cut(s)	176
SmiMI	CAYNNNNRTG	3 cut(s)	83, 411, 698
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	7, 281, 371
SsiI	CCGC	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	173, 174, 303, 327
TaaI	ACNGT	3 cut(s)	66, 291, 540
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	6 cut(s)	14, 184, 242, 249, 375, 643
TasI	AATT	3 cut(s)	7, 281, 371
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	262, 474, 609
Tru1I	TTAA	3 cut(s)	195, 225, 495
Tru9I	TTAA	3 cut(s)	195, 225, 495
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	373, 395, 466, 703
TspMI	CCCGGG	1 cut(s)	174
TspRI	CASTG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	13
XmaI	CCCGGG	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.