Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

54643767 .. 54645227

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG422600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAAGCTGTTCGAAGCCAAGACTTTGAAAAGGTTGGGGAGTTACGTGAGAGAGAAATGGACCTTAAGACAGATCAGAAATATAAAAGAGAAAGGCAAAGAGATGAGCAAGGCTGAGAGCGAGGCAGGGGATGTAGGTCCTATGGTAACTGAAGTGGATATTCAACATATCGTGTTCTCTTGGACTGGTATTCCTGTTGACAAAGTGTCAGCTGATGAATCGGATCGCCTTCTCAAGATGGAAGAGACACTCCATAAGCGGGTTATTGGTCAGGATGAAGCAGTCAAGGCTAATAGTCGTGCTATTCGCCGAGGCCGTGTTGGACTCAAATATCCTAATCGTCCAATTGCCAGTTTCATCTTTTCTGGTCCAACTGGTGTTGGAAAATCCGAACTCGCAAAAGCTTTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTTGCCTTGATATGAGTGAATTTATGGAACGGCACTCTGTTTCAAAGCTTATTGGTTCTCCCCCTGGTTATGTTGGTTACACTGATGGAGGTCAGCTGACTGAAGCCGTTAGACGCCGTCCTTACACTGTGGTGCTATTTGATGAGATTGAGAAGGCTGATCCAGATGTCTTAAATATGATGCTTCAAATTCTTGAGGATGGAAGATTGACCGACAGCAAGGGCAGAACTGTGGATTTCAAGAATACACTTCTTCTGATCATGACATCTAATGTCGGAAGCAGTGTAATTGAGAAAGGAGGACTCCGTGTAGGATTTGATCTTGATTACGATGAGAATGATAGCAGTCACAATCGCATCAAGAGCTTAGTGACAGAGGAGCTAAAACAGCAATTTAGACCTGAGTTCCTAAATAGGTTGGATGAAATCATTGTCTTCCGCCAGCTGACTAAGTTGGAGCTGAAGGAAATAGCAGATATAATGCTGAAGGAGGTTTCCGAAAGGCTGAAGACTAAAGAGATACAGCTTCAAGTGACAGAGAGGTTCAGGGATAGGTTGGTTGATGAAGGATACAACCCAAGCTATGGGGCAAGGCCTCTAAGAAGAGCCATAATGAGACTTTTGGAGGACAACATGGCTGAGAAGATGCTAGCAAGGGAAATCAAAGAGGGCGACACAGTTATTGTGAATGTCGATTATGATGGGAATGTAATTGTGCTCAATCAGTGGTTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

392

Amino Acids

44.69

Weight (kDa)

6.03

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	114 - 290	7.8e-65	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	119 - 241	6.4e-12	AAA domain (dynein-related subfamily)
AAA	PF00004	120 - 239	2.5e-06	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	296 - 376	2.8e-26	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1025
AciI	CCGC	2 cut(s)	259, 880
AclWI	GGATC	2 cut(s)	231, 596
AcsI	RAATTY	2 cut(s)	461, 630
AcuI	CTGAAG	6 cut(s)	171, 450, 564, 923, 947, 968
AcyI	GRCGYC	1 cut(s)	556
AfiI	CCNNNNNNNGG	2 cut(s)	259, 1025
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	6 cut(s)	28, 164, 486, 629, 682, 971
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	505
AleI	CACNNNNGTG	1 cut(s)	572
Alw21I	GWGCWC	1 cut(s)	1161
Alw26I	GTCTC	2 cut(s)	239, 1051
AlwI	GGATC	2 cut(s)	231, 596
AoxI	GGCC	2 cut(s)	313, 1034
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	461, 630
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	60, 137, 368
AsuII	TTCGAA	1 cut(s)	12
AsuNHI	GCTAGC	1 cut(s)	1090
AvaII	GGWCC	3 cut(s)	60, 137, 368
BbsI	GAAGAC	2 cut(s)	868, 956
Bbv12I	GWGCWC	1 cut(s)	1161
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	4 cut(s)	232, 521, 635, 1136
BceAI	ACGGC	4 cut(s)	300, 488, 533, 543
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	1004
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	239, 1051
BfaI	CTAG	1 cut(s)	1091
BfrI	CTTAAG	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	1004
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	3 cut(s)	60, 137, 368
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	60, 137, 368
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	612, 807, 1077
BmtI	GCTAGC	1 cut(s)	1094
BpiI	GAAGAC	2 cut(s)	868, 956
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	218, 656
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	310, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 1025
Bse1I	ACTGG	3 cut(s)	190, 351, 379
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	310, 505
BseGI	GGATG	4 cut(s)	136, 280, 646, 868
BseLI	CCNNNNNNNGG	2 cut(s)	259, 1025
BseMII	CTCAG	3 cut(s)	105, 834, 1071
BseNI	ACTGG	3 cut(s)	190, 351, 379
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	1 cut(s)	397
BshFI	GGCC	2 cut(s)	315, 1036
BsiHKAI	GWGCWC	1 cut(s)	1161
BslI	CCNNNNNNNGG	2 cut(s)	259, 1025
BsmAI	GTCTC	2 cut(s)	239, 1051
BsnI	GGCC	2 cut(s)	315, 1036
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	1161
Bsp143I	GATC	5 cut(s)	72, 223, 601, 699, 760
BspACI	CCGC	2 cut(s)	259, 880
BspANI	GGCC	2 cut(s)	315, 1036
BspCNI	CTCAG	3 cut(s)	106, 835, 1072
BspHI	TCATGA	1 cut(s)	702
BspOI	GCTAGC	1 cut(s)	1094
BspPI	GGATC	2 cut(s)	231, 596
BspQI	GCTCTTC	1 cut(s)	1039
BspT104I	TTCGAA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	190, 351, 379
BssECI	CCNNGG	2 cut(s)	310, 505
BssMI	GATC	5 cut(s)	72, 223, 601, 699, 760
BssNI	GRCGYC	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	571, 673, 1120
Bst6I	CTCTTC	2 cut(s)	237, 1039
BstACI	GRCGYC	1 cut(s)	556
BstAFI	CTTAAG	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	884, 1092
BstDEI	CTNAG	6 cut(s)	114, 808, 843, 891, 1040, 1080
BstF5I	GGATG	4 cut(s)	136, 280, 646, 868
BstKTI	GATC	5 cut(s)	75, 226, 604, 702, 763
BstMAI	GTCTC	2 cut(s)	239, 1051
BstMBI	GATC	5 cut(s)	72, 223, 601, 699, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 410, 804, 829
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	2 cut(s)	868, 956
BsuI	GTATCC	1 cut(s)	1004
BsuRI	GGCC	2 cut(s)	315, 1036
BtsCI	GGATG	4 cut(s)	136, 280, 646, 868
BtsI	GCAGTG	1 cut(s)	730
BtsIMutI	CAGTG	4 cut(s)	522, 567, 730, 1172
Cac8I	GCNNGC	2 cut(s)	884, 1092
CciI	TCATGA	1 cut(s)	702
Cfr13I	GGNCC	3 cut(s)	60, 137, 368
CseI	GACGC	1 cut(s)	564
CviAII	CATG	3 cut(s)	439, 703, 1075
DdeI	CTNAG	6 cut(s)	114, 808, 843, 891, 1040, 1080
DpnI	GATC	5 cut(s)	74, 225, 603, 701, 762
DpnII	GATC	5 cut(s)	72, 223, 601, 699, 760
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	237, 1039
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	2 cut(s)	237, 1039
EciI	GGCGGA	1 cut(s)	869
Eco147I	AGGCCT	1 cut(s)	1036
Eco47I	GGWCC	3 cut(s)	60, 137, 368
Eco57I	CTGAAG	6 cut(s)	171, 450, 564, 923, 947, 968
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	505
FaeI	CATG	3 cut(s)	442, 706, 1078
FatI	CATG	3 cut(s)	438, 702, 1074
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	4 cut(s)	143, 287, 653, 875
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	1091
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	315, 1036
HgaI	GACGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	556
Hin1II	CATG	3 cut(s)	442, 706, 1078
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	2 cut(s)	402, 488
HinfI	GANTC	3 cut(s)	218, 324, 744
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	7 cut(s)	77, 223, 391, 430, 699, 719, 940
Hpy188III	TCNNGA	9 cut(s)	235, 272, 605, 635, 682, 703, 764, 802, 1176
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	5 cut(s)	239, 589, 898, 922, 1001
HpyCH4III	ACNGT	3 cut(s)	571, 673, 1120
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 410, 804, 829
HpyF3I	CTNAG	6 cut(s)	114, 808, 843, 891, 1040, 1080
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	556
Hsp92II	CATG	3 cut(s)	442, 706, 1078
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	5 cut(s)	72, 223, 601, 699, 760
LguI	GCTCTTC	1 cut(s)	1039
LmnI	GCTCC	2 cut(s)	820, 898
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	3 cut(s)	612, 807, 1077
MaeI	CTAG	1 cut(s)	1091
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	6 cut(s)	41, 145, 518, 788, 811, 973
MalI	GATC	5 cut(s)	74, 225, 603, 701, 762
MboI	GATC	5 cut(s)	72, 223, 601, 699, 760
MboII	GAAGA	8 cut(s)	254, 443, 657, 686, 868, 961, 1056, 1096
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	1161
MluCI	AATT	6 cut(s)	345, 461, 630, 729, 833, 1152
MlyI	GAGTC	2 cut(s)	318, 738
MmeI	TCCRAC	6 cut(s)	301, 361, 395, 697, 840, 876
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	65, 614
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	3 cut(s)	212, 538, 886
MspCI	CTTAAG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	287, 410, 804, 829
NdeII	GATC	5 cut(s)	72, 223, 601, 699, 760
NheI	GCTAGC	1 cut(s)	1090
NlaIII	CATG	3 cut(s)	442, 706, 1078
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	3 cut(s)	788, 811, 973
NspV	TTCGAA	1 cut(s)	12
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	1036
PciSI	GCTCTTC	1 cut(s)	1039
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	558
PflMI	CCANNNNNTGG	1 cut(s)	1025
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	2 cut(s)	318, 738
PpsI	GAGTC	2 cut(s)	318, 738
Ppu21I	YACGTR	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspPI	GGNCC	3 cut(s)	60, 137, 368
PspPPI	RGGWCCY	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	558
PvuII	CAGCTG	3 cut(s)	212, 538, 886
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	1039
SaqAI	TTAA	2 cut(s)	65, 614
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	5 cut(s)	72, 223, 601, 699, 760
Sau96I	GGNCC	3 cut(s)	60, 137, 368
SchI	GAGTC	2 cut(s)	318, 738
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	1161
SfaNI	GCATC	3 cut(s)	612, 807, 1077
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	3 cut(s)	60, 137, 368
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	3 cut(s)	64, 233, 635
SmoI	CTYRAG	3 cut(s)	64, 233, 635
Sse9I	AATT	6 cut(s)	345, 461, 630, 729, 833, 1152
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	2 cut(s)	259, 880
SspMI	CTAG	1 cut(s)	1091
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	571, 673, 1120
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	12, 1134
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	6 cut(s)	345, 461, 630, 729, 833, 1152
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	65, 614
Tru9I	TTAA	2 cut(s)	65, 614
TscAI	CASTG	4 cut(s)	529, 574, 730, 1172
TseFI	GTSAC	3 cut(s)	788, 811, 973
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	3 cut(s)	788, 811, 973
TspDTI	ATGAA	6 cut(s)	17, 231, 291, 346, 879, 1020
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	4 cut(s)	529, 574, 730, 1172
Tth111I	GACNNNGTC	1 cut(s)	558
Van91I	CCANNNNNTGG	1 cut(s)	1025
Vha464I	CTTAAG	1 cut(s)	64
VpaK11BI	GGWCC	3 cut(s)	60, 137, 368
XapI	RAATTY	2 cut(s)	461, 630
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.