Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004579

Physical Location & Seq

Genomic Coordinates Forward (+)

54799505 .. 54804144

Gene Structure 4640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGACCATAAGACACAGATCAGAAATATAAAAGAGAAAGGCAAAGAGATGAGCAAGGCTGAGAGCGAGGCAGGGGATGTAGGACCTACGGTAACTGAAGTGGATATTCAACATATCGTGTTCTCTTGGACTGGTATTCCTGTTGACAAAGTGTCAGCTGATGAATCGGATCGCCTTCCCAAGATGGAAGAGACCCTCCATAAGCGGGTTATTGGTCAGGACGAAGCAGTCAAGGCTATTAGTCGTGCTATTCGCCGAGGCCGTGTTGGACTCAGATATCCTAATCGTCCAATTGCCAGTTTCATCTTTTCTGGTCCAACTGGTGGAAAATCCGAACTCGCAAAAGCTTTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTTGCCTTGATATGAGTGAATTTATGGAACGGCACTCTGTTTCAAAGCTTATTGGTTCTCCCCCTGGTTATGTTGGTTACACTGATGGAGGTCAGCTGACTGAAGCCGTTAGACGCCGTCCTTACACTGTGGTGCTATTTGATGAGATTGAGAAGGCTGATCCAGATGTCTTAAATATGATGCTTCAAATTCTTGAGGATGGAAGATTGACTGACAGCAAGGGCAGAACTGTGGATTTCAAGAATACACTTCTGATCATGACATCTAATGTCGGAAGCAGTGTAATTGAGAAAGGAGGACTCCGTGTAGGATTTGATCTTGATTACAATGAGAATGATAGCAGTCACAATCGCATCAAGAGCTCAGTGACAGAGGAGCTAAAACAACAATTTAGACCTGAGTTCCTAAATAGGTTGGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

269

Amino Acids

30.09

Weight (kDa)

5.56

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	96 - 269	7.1e-65	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	101 - 221	7e-09	AAA domain (dynein-related subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50920
fragaria_vesca	FvH4_5g09290 FvH4_5g09290
malus_domestica	MD06G1132300.v1.1 MD14G1148700.v1.1
prunus_persica	Prupe.5G143300_v2.0.a1 Prupe.5G143300_v2.0.a1
pyrus_communis	pycom06g12390 pycom14g12350
rosa_chinensis	RchiOBHm_Chr7g0188931 RchiOBHm_Chr7g0228651 RchiOBHm_Chr7g0228661
rosa_laevigata	RLG00000001549 RLG00000004649
rosa_multiflora	Rmu_sc0004237.1_g000004 Rmu_sc0010299.1_g000001 Rmu_sc0019257.1_g000002 Rmu_sc0032883.1_g000002 Rmu_ssc0000113.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230940 Rroxscaffold_3G00265930
rosa_rugosa	Rorug06G0494700
rosa_samantha	Rh7AG099600 Rh7AG403400 Rh7CG103000 Rh7CG422600 Rh7DG101500 Rh7DG399000
rosa_wichuraiana	Rw7G008580 Rw7G033500 Rw7G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	323
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	2 cut(s)	177, 539
AcsI	RAATTY	2 cut(s)	404, 573
AcuI	CTGAAG	3 cut(s)	117, 393, 507
AcyI	GRCGYC	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	205, 323
AgsI	TTSAA	4 cut(s)	110, 429, 572, 625
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	448
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	6 cut(s)	158, 347, 433, 481, 747, 763
AluI	AGCT	6 cut(s)	158, 347, 433, 481, 747, 763
Alw21I	GWGCWC	1 cut(s)	749
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	177, 539
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	404, 573
AspS9I	GGNCC	3 cut(s)	4, 83, 314
AvaII	GGWCC	3 cut(s)	4, 83, 314
BanII	GRGCYC	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	749
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	178, 464, 578
BceAI	ACGGC	4 cut(s)	246, 431, 476, 486
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	3 cut(s)	4, 83, 314
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	4, 83, 314
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	555, 747
BpuEI	CTTGAG	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	256, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 323
Bse1I	ACTGG	3 cut(s)	136, 297, 325
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	256, 448
BseGI	GGATG	3 cut(s)	82, 589, 808
BseLI	CCNNNNNNNGG	2 cut(s)	205, 323
BseMII	CTCAG	4 cut(s)	51, 286, 762, 774
BseNI	ACTGG	3 cut(s)	136, 297, 325
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	205, 323
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	5 cut(s)	18, 169, 544, 639, 700
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	4 cut(s)	52, 285, 761, 775
BspHI	TCATGA	1 cut(s)	642
BspPI	GGATC	2 cut(s)	177, 539
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	136, 297, 325
BssECI	CCNNGG	2 cut(s)	256, 448
BssMI	GATC	5 cut(s)	18, 169, 544, 639, 700
BssNI	GRCGYC	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	91, 514, 616
Bst6I	CTCTTC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	499
BstDEI	CTNAG	4 cut(s)	60, 272, 748, 783
BstF5I	GGATG	3 cut(s)	82, 589, 808
BstKTI	GATC	5 cut(s)	21, 172, 547, 642, 703
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	5 cut(s)	18, 169, 544, 639, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 353, 744
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	82, 589, 808
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	4 cut(s)	465, 510, 670, 756
CciI	TCATGA	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	4, 83, 314
CseI	GACGC	1 cut(s)	507
CviAII	CATG	2 cut(s)	382, 643
DdeI	CTNAG	4 cut(s)	60, 272, 748, 783
DpnI	GATC	5 cut(s)	20, 171, 546, 641, 702
DpnII	GATC	5 cut(s)	18, 169, 544, 639, 700
DrdI	GACNNNNNNGTC	1 cut(s)	227
DriI	GACNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	183
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	747
Eco24I	GRGCYC	1 cut(s)	749
Eco31I	GGTCTC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	278
Eco47I	GGWCC	3 cut(s)	4, 83, 314
Eco53kI	GAGCTC	1 cut(s)	747
Eco57I	CTGAAG	3 cut(s)	117, 393, 507
EcoICRI	GAGCTC	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	749
FaeI	CATG	2 cut(s)	385, 646
FatI	CATG	2 cut(s)	381, 642
FauI	CCCGC	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	89, 596
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	499
Hin1II	CATG	2 cut(s)	385, 646
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	2 cut(s)	345, 431
HinfI	GANTC	3 cut(s)	164, 270, 684
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	7 cut(s)	23, 169, 275, 334, 373, 639, 659
Hpy188III	TCNNGA	7 cut(s)	218, 548, 578, 625, 643, 704, 742
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	185, 532
HpyCH4III	ACNGT	3 cut(s)	91, 514, 616
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 353, 744
HpyF3I	CTNAG	4 cut(s)	60, 272, 748, 783
Hsp92I	GRCGYC	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	385, 646
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	18, 169, 544, 639, 700
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	555, 747
MaeIII	GTNAC	4 cut(s)	91, 461, 728, 751
MalI	GATC	5 cut(s)	20, 171, 546, 641, 702
MboI	GATC	5 cut(s)	18, 169, 544, 639, 700
MboII	GAAGA	3 cut(s)	200, 386, 600
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	749
MluCI	AATT	5 cut(s)	291, 404, 573, 669, 773
MlyI	GAGTC	2 cut(s)	264, 678
MmeI	TCCRAC	4 cut(s)	247, 341, 637, 780
MnlI	CCTC	7 cut(s)	61, 206, 251, 467, 574, 674, 751
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	158, 481
MspR9I	CCNGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	233, 353, 744
NdeII	GATC	5 cut(s)	18, 169, 544, 639, 700
NlaIII	CATG	2 cut(s)	385, 646
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	728, 751
OliI	CACNNNNGTG	1 cut(s)	515
PagI	TCATGA	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	264, 678
PpsI	GAGTC	2 cut(s)	264, 678
PpuMI	RGGWCCY	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspPI	GGNCC	3 cut(s)	4, 83, 314
PspPPI	RGGWCCY	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	501
PvuII	CAGCTG	2 cut(s)	158, 481
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	18, 169, 544, 639, 700
Sau96I	GGNCC	3 cut(s)	4, 83, 314
SchI	GAGTC	2 cut(s)	264, 678
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	2 cut(s)	555, 747
SinI	GGWCC	3 cut(s)	4, 83, 314
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	5 cut(s)	291, 404, 573, 669, 773
SsiI	CCGC	1 cut(s)	205
SstI	GAGCTC	1 cut(s)	749
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	91, 514, 616
TasI	AATT	5 cut(s)	291, 404, 573, 669, 773
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	4 cut(s)	472, 517, 670, 756
TseFI	GTSAC	2 cut(s)	728, 751
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	728, 751
TspDTI	ATGAA	2 cut(s)	177, 292
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	4 cut(s)	472, 517, 670, 756
Tth111I	GACNNNGTC	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	4, 83, 314
XapI	RAATTY	2 cut(s)	404, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.