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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52290 |
| fragaria_vesca | FvH4_7g29470 FvH4_7g29470 |
| malus_domestica | MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1 |
| prunus_persica | Prupe.2G294300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0377251 |
| rosa_laevigata | RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471 |
| rosa_multiflora | Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00281340 |
| rosa_rugosa | Rorug01G0402700 Rorug01G0402700 |
| rosa_samantha | Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900 |
| rosa_wichuraiana | Rw1G036840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1320, 4074 |
| AarI | CACCTGC | 1 cut(s) | 2522 |
| AatII | GACGTC | 1 cut(s) | 3014 |
| Acc36I | ACCTGC | 1 cut(s) | 2522 |
| Acc65I | GGTACC | 1 cut(s) | 844 |
| AccB1I | GGYRCC | 2 cut(s) | 103, 844 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 958 |
| AccI | GTMKAC | 1 cut(s) | 114 |
| AccII | CGCG | 2 cut(s) | 234, 2859 |
| AciI | CCGC | 9 cut(s) | 232, 323, 589, 1922, 2517, 3063, 4058, 4187, 4642 |
| AclWI | GGATC | 9 cut(s) | 417, 949, 1586, 1599, 2656, 3743, 3764, 4168, 4393 |
| AcoI | YGGCCR | 3 cut(s) | 829, 3758, 4759 |
| AcuI | CTGAAG | 7 cut(s) | 450, 1317, 1392, 1740, 2246, 3411, 4641 |
| AcyI | GRCGYC | 1 cut(s) | 3011 |
| AdeI | CACNNNGTG | 1 cut(s) | 1747 |
| AfaI | GTAC | 9 cut(s) | 798, 846, 930, 2544, 2806, 2959, 3387, 3545, 4425 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 958, 964, 1255, 1421, 4067, 4186, 4309 |
| AflII | CTTAAG | 2 cut(s) | 1847, 4694 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3790 |
| AjiI | CACGTC | 1 cut(s) | 220 |
| AjnI | CCWGG | 8 cut(s) | 885, 957, 2145, 3069, 3799, 3868, 4066, 4537 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2310, 2342, 3051, 3083 |
| Alw21I | GWGCWC | 1 cut(s) | 1173 |
| AlwI | GGATC | 9 cut(s) | 417, 949, 1586, 1599, 2656, 3743, 3764, 4168, 4393 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 958, 3113, 3800 |
| Ama87I | CYCGRG | 6 cut(s) | 1622, 2172, 3233, 4043, 4201, 4586 |
| AoxI | GGCC | 3 cut(s) | 829, 3758, 4759 |
| ApeKI | GCWGC | 6 cut(s) | 194, 1640, 2945, 3074, 3107, 3110 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3207, 3239 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1764, 3258, 4093 |
| Asp718I | GGTACC | 1 cut(s) | 844 |
| AspA2I | CCTAGG | 2 cut(s) | 64, 3121 |
| AspLEI | GCGC | 2 cut(s) | 1752, 2859 |
| AspS9I | GGNCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| AsuC2I | CCSGG | 4 cut(s) | 101, 455, 2173, 2174 |
| AsuHPI | GGTGA | 4 cut(s) | 3256, 3961, 4025, 4656 |
| AvaI | CYCGRG | 6 cut(s) | 1622, 2172, 3233, 4043, 4201, 4586 |
| AvaII | GGWCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| AvrII | CCTAGG | 2 cut(s) | 64, 3121 |
| BalI | TGGCCA | 2 cut(s) | 831, 4761 |
| BamHI | GGATCC | 1 cut(s) | 1591 |
| BanI | GGYRCC | 2 cut(s) | 103, 844 |
| BanII | GRGCYC | 1 cut(s) | 1173 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3181, 3213 |
| BauI | CACGAG | 1 cut(s) | 400 |
| BbsI | GAAGAC | 6 cut(s) | 135, 992, 1727, 3621, 3857, 4056 |
| Bbv12I | GWGCWC | 1 cut(s) | 1173 |
| BbvCI | CCTCAGC | 1 cut(s) | 903 |
| BbvI | GCAGC | 6 cut(s) | 181, 1627, 2932, 3061, 3119, 3122 |
| BccI | CCATC | 5 cut(s) | 116, 373, 2137, 2383, 4585 |
| BceAI | ACGGC | 3 cut(s) | 1225, 3062, 3745 |
| BciT130I | CCWGG | 8 cut(s) | 887, 959, 2147, 3071, 3801, 3870, 4068, 4539 |
| BciVI | GTATCC | 2 cut(s) | 176, 2006 |
| BclI | TGATCA | 1 cut(s) | 2787 |
| BcnI | CCSGG | 4 cut(s) | 101, 455, 2173, 2174 |
| BfaI | CTAG | 8 cut(s) | 65, 437, 632, 1629, 2135, 3122, 3248, 4524 |
| BfmI | CTRYAG | 4 cut(s) | 485, 567, 2895, 4332 |
| BfrI | CTTAAG | 2 cut(s) | 1847, 4694 |
| BfuAI | ACCTGC | 1 cut(s) | 2522 |
| BfuI | GTATCC | 2 cut(s) | 176, 2006 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3071 |
| BglII | AGATCT | 7 cut(s) | 1160, 1694, 2744, 2866, 3449, 3678, 4328 |
| BisI | GCNGC | 7 cut(s) | 195, 1641, 2946, 3075, 3108, 3111, 4188 |
| BlnI | CCTAGG | 2 cut(s) | 64, 3121 |
| BlsI | GCNGC | 7 cut(s) | 196, 1642, 2947, 3076, 3109, 3112, 4189 |
| Bme18I | GGWCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3790 |
| BmeT110I | CYCGRG | 6 cut(s) | 1622, 2172, 3233, 4043, 4201, 4586 |
| BmgBI | CACGTC | 1 cut(s) | 220 |
| BmgT120I | GGNCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| BmiI | GGNNCC | 8 cut(s) | 87, 105, 225, 846, 1247, 1593, 3060, 4301 |
| BmrI | ACTGGG | 4 cut(s) | 1333, 2502, 2601, 3896 |
| BmsI | GCATC | 5 cut(s) | 304, 604, 1099, 1366, 3703 |
| BmuI | ACTGGG | 4 cut(s) | 1333, 2502, 2601, 3896 |
| BpiI | GAAGAC | 6 cut(s) | 135, 992, 1727, 3621, 3857, 4056 |
| BpmI | CTGGAG | 5 cut(s) | 345, 1187, 3430, 4151, 4521 |
| Bpu10I | CCTNAGC | 1 cut(s) | 903 |
| BpuEI | CTTGAG | 7 cut(s) | 673, 722, 1274, 2676, 2950, 3282, 3608 |
| BpuMI | CCSGG | 4 cut(s) | 101, 455, 2173, 2174 |
| Bsa29I | ATCGAT | 1 cut(s) | 24 |
| BsaAI | YACGTR | 1 cut(s) | 52 |
| BsaBI | GATNNNNATC | 4 cut(s) | 783, 2865, 4038, 4278 |
| BsaHI | GRCGYC | 1 cut(s) | 3011 |
| BsaI | GGTCTC | 1 cut(s) | 2735 |
| BsaWI | WCCGGW | 1 cut(s) | 3946 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2261, 2291, 2562, 2592, 2832, 2862 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 958, 964, 1255, 1421, 4067, 4186, 4309 |
| Bse1I | ACTGG | 6 cut(s) | 932, 1328, 2508, 2596, 3902, 4762 |
| Bse3DI | GCAATG | 3 cut(s) | 318, 2832, 3546 |
| Bse8I | GATNNNNATC | 4 cut(s) | 783, 2865, 4038, 4278 |
| BseBI | CCWGG | 8 cut(s) | 887, 959, 2147, 3071, 3801, 3870, 4068, 4539 |
| BseCI | ATCGAT | 1 cut(s) | 24 |
| BseJI | GATNNNNATC | 4 cut(s) | 783, 2865, 4038, 4278 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 958, 964, 1255, 1421, 4067, 4186, 4309 |
| BseMI | GCAATG | 3 cut(s) | 318, 2832, 3546 |
| BseNI | ACTGG | 6 cut(s) | 932, 1328, 2508, 2596, 3902, 4762 |
| BseRI | GAGGAG | 2 cut(s) | 3079, 4325 |
| BseXI | GCAGC | 6 cut(s) | 181, 1627, 2932, 3061, 3119, 3122 |
| BsgI | GTGCAG | 2 cut(s) | 1533, 2550 |
| Bsh1236I | CGCG | 2 cut(s) | 234, 2859 |
| Bsh1285I | CGRYCG | 2 cut(s) | 153, 232 |
| BshFI | GGCC | 3 cut(s) | 831, 3760, 4761 |
| BshNI | GGYRCC | 2 cut(s) | 103, 844 |
| BshVI | ATCGAT | 1 cut(s) | 24 |
| BsiEI | CGRYCG | 2 cut(s) | 153, 232 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1173 |
| BsiHKCI | CYCGRG | 6 cut(s) | 1622, 2172, 3233, 4043, 4201, 4586 |
| BsiSI | CCGG | 5 cut(s) | 83, 101, 455, 2173, 3947 |
| BslFI | GGGAC | 1 cut(s) | 2259 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 958, 964, 1255, 1421, 4067, 4186, 4309 |
| BsmBI | CGTCTC | 4 cut(s) | 140, 698, 2565, 2576 |
| BsmFI | GGGAC | 1 cut(s) | 2259 |
| BsmI | GAATGC | 1 cut(s) | 587 |
| BsnI | GGCC | 3 cut(s) | 831, 3760, 4761 |
| Bso31I | GGTCTC | 1 cut(s) | 2735 |
| BsoBI | CYCGRG | 6 cut(s) | 1622, 2172, 3233, 4043, 4201, 4586 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1173 |
| Bsp19I | CCATGG | 2 cut(s) | 602, 2244 |
| BspACI | CCGC | 9 cut(s) | 232, 323, 589, 1922, 2517, 3063, 4058, 4187, 4642 |
| BspANI | GGCC | 3 cut(s) | 831, 3760, 4761 |
| BspDI | ATCGAT | 1 cut(s) | 24 |
| BspFNI | CGCG | 2 cut(s) | 234, 2859 |
| BspHI | TCATGA | 4 cut(s) | 2305, 3336, 3673, 3918 |
| BspLI | GGNNCC | 8 cut(s) | 87, 105, 225, 846, 1247, 1593, 3060, 4301 |
| BspMAI | CTGCAG | 3 cut(s) | 489, 2899, 4336 |
| BspMI | ACCTGC | 1 cut(s) | 2522 |
| BspPI | GGATC | 9 cut(s) | 417, 949, 1586, 1599, 2656, 3743, 3764, 4168, 4393 |
| BspQI | GCTCTTC | 2 cut(s) | 1787, 3475 |
| BspT107I | GGYRCC | 2 cut(s) | 103, 844 |
| BspTI | CTTAAG | 2 cut(s) | 1847, 4694 |
| BspTNI | GGTCTC | 1 cut(s) | 2735 |
| BsrDI | GCAATG | 3 cut(s) | 318, 2832, 3546 |
| BsrI | ACTGG | 6 cut(s) | 932, 1328, 2508, 2596, 3902, 4762 |
| BssNI | GRCGYC | 1 cut(s) | 3011 |
| BssSI | CACGAG | 1 cut(s) | 400 |
| BssT1I | CCWWGG | 5 cut(s) | 64, 602, 2244, 3121, 4436 |
| Bst2BI | CACGAG | 1 cut(s) | 400 |
| Bst2UI | CCWGG | 8 cut(s) | 887, 959, 2147, 3071, 3801, 3870, 4068, 4539 |
| Bst6I | CTCTTC | 9 cut(s) | 277, 1787, 2222, 3387, 3475, 4104, 4506, 4620, 4625 |
| BstACI | GRCGYC | 1 cut(s) | 3011 |
| BstAFI | CTTAAG | 2 cut(s) | 1847, 4694 |
| BstBAI | YACGTR | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 5 cut(s) | 1388, 1446, 2515, 2519, 4722 |
| BstDSI | CCRYGG | 3 cut(s) | 602, 1241, 2244 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1253, 4307 |
| BstFNI | CGCG | 2 cut(s) | 234, 2859 |
| BstHHI | GCGC | 2 cut(s) | 1752, 2859 |
| BstMCI | CGRYCG | 2 cut(s) | 153, 232 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 329, 1535, 2230, 2503, 3071 |
| BstNI | CCWGG | 8 cut(s) | 887, 959, 2147, 3071, 3801, 3870, 4068, 4539 |
| BstNSI | RCATGY | 2 cut(s) | 1448, 2517 |
| BstSFI | CTRYAG | 4 cut(s) | 485, 567, 2895, 4332 |
| BstUI | CGCG | 2 cut(s) | 234, 2859 |
| BstV1I | GCAGC | 6 cut(s) | 181, 1627, 2932, 3061, 3119, 3122 |
| BstV2I | GAAGAC | 6 cut(s) | 135, 992, 1727, 3621, 3857, 4056 |
| Bsu15I | ATCGAT | 1 cut(s) | 24 |
| BsuI | GTATCC | 2 cut(s) | 176, 2006 |
| BsuRI | GGCC | 3 cut(s) | 831, 3760, 4761 |
| BsuTUI | ATCGAT | 1 cut(s) | 24 |
| BtgI | CCRYGG | 3 cut(s) | 602, 1241, 2244 |
| BtgZI | GCGATG | 1 cut(s) | 3982 |
| BtrI | CACGTC | 1 cut(s) | 220 |
| BtsI | GCAGTG | 1 cut(s) | 1521 |
| BtsIMutI | CAGTG | 9 cut(s) | 244, 1407, 1521, 1750, 2515, 3520, 3699, 3858, 4221 |
| BveI | ACCTGC | 1 cut(s) | 2522 |
| Cac8I | GCNNGC | 5 cut(s) | 1388, 1446, 2515, 2519, 4722 |
| CaiI | CAGNNNCTG | 3 cut(s) | 958, 3113, 3800 |
| CciI | TCATGA | 4 cut(s) | 2305, 3336, 3673, 3918 |
| CfoI | GCGC | 2 cut(s) | 1752, 2859 |
| Cfr13I | GGNCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| Cfr9I | CCCGGG | 1 cut(s) | 2172 |
| ClaI | ATCGAT | 1 cut(s) | 24 |
| CseI | GACGC | 3 cut(s) | 223, 2389, 3379 |
| CsiI | ACCWGGT | 1 cut(s) | 3799 |
| Csp6I | GTAC | 9 cut(s) | 797, 845, 929, 2543, 2805, 2958, 3386, 3544, 4424 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1256, 1291, 4509, 4544 |
| CviQI | GTAC | 9 cut(s) | 797, 845, 929, 2543, 2805, 2958, 3386, 3544, 4424 |
| DraIII | CACNNNGTG | 1 cut(s) | 1747 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3790 |
| EaeI | YGGCCR | 3 cut(s) | 829, 3758, 4759 |
| Eam1104I | CTCTTC | 9 cut(s) | 277, 1787, 2222, 3387, 3475, 4104, 4506, 4620, 4625 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3790 |
| EarI | CTCTTC | 9 cut(s) | 277, 1787, 2222, 3387, 3475, 4104, 4506, 4620, 4625 |
| EciI | GGCGGA | 1 cut(s) | 1937 |
| Ecl136II | GAGCTC | 1 cut(s) | 1171 |
| Eco130I | CCWWGG | 5 cut(s) | 64, 602, 2244, 3121, 4436 |
| Eco24I | GRGCYC | 1 cut(s) | 1173 |
| Eco31I | GGTCTC | 1 cut(s) | 2735 |
| Eco32I | GATATC | 3 cut(s) | 970, 988, 2992 |
| Eco47I | GGWCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| Eco53kI | GAGCTC | 1 cut(s) | 1171 |
| Eco57I | CTGAAG | 7 cut(s) | 450, 1317, 1392, 1740, 2246, 3411, 4641 |
| Eco88I | CYCGRG | 6 cut(s) | 1622, 2172, 3233, 4043, 4201, 4586 |
| EcoICRI | GAGCTC | 1 cut(s) | 1171 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1253, 4307 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3797, 4299 |
| EcoRI | GAATTC | 5 cut(s) | 947, 3332, 3704, 3873, 4651 |
| EcoRII | CCWGG | 8 cut(s) | 885, 957, 2145, 3069, 3799, 3868, 4066, 4537 |
| EcoRV | GATATC | 3 cut(s) | 970, 988, 2992 |
| EcoT14I | CCWWGG | 5 cut(s) | 64, 602, 2244, 3121, 4436 |
| EcoT38I | GRGCYC | 1 cut(s) | 1173 |
| ErhI | CCWWGG | 5 cut(s) | 64, 602, 2244, 3121, 4436 |
| Esp3I | CGTCTC | 4 cut(s) | 140, 698, 2565, 2576 |
| FaqI | GGGAC | 1 cut(s) | 2259 |
| FauI | CCCGC | 3 cut(s) | 2510, 3070, 4065 |
| FbaI | TGATCA | 1 cut(s) | 2787 |
| FblI | GTMKAC | 1 cut(s) | 114 |
| Fnu4HI | GCNGC | 7 cut(s) | 195, 1641, 2946, 3075, 3108, 3111, 4188 |
| FriOI | GRGCYC | 1 cut(s) | 1173 |
| Fsp4HI | GCNGC | 7 cut(s) | 195, 1641, 2946, 3075, 3108, 3111, 4188 |
| FspBI | CTAG | 8 cut(s) | 65, 437, 632, 1629, 2135, 3122, 3248, 4524 |
| GlaI | GCGC | 2 cut(s) | 1751, 2858 |
| GluI | GCNGC | 7 cut(s) | 195, 1641, 2946, 3075, 3108, 3111, 4188 |
| GsuI | CTGGAG | 5 cut(s) | 345, 1187, 3430, 4151, 4521 |
| HaeIII | GGCC | 3 cut(s) | 831, 3760, 4761 |
| HapII | CCGG | 5 cut(s) | 83, 101, 455, 2173, 3947 |
| HgaI | GACGC | 3 cut(s) | 223, 2389, 3379 |
| HhaI | GCGC | 2 cut(s) | 1752, 2859 |
| Hin1I | GRCGYC | 1 cut(s) | 3011 |
| Hin6I | GCGC | 2 cut(s) | 1750, 2857 |
| HinP1I | GCGC | 2 cut(s) | 1750, 2857 |
| HindIII | AAGCTT | 3 cut(s) | 667, 1329, 1874 |
| HpaII | CCGG | 5 cut(s) | 83, 101, 455, 2173, 3947 |
| HphI | GGTGA | 4 cut(s) | 3256, 3961, 4025, 4656 |
| Hpy166II | GTNNAC | 8 cut(s) | 115, 244, 649, 1906, 2761, 2878, 2972, 3134 |
| Hpy8I | GTNNAC | 8 cut(s) | 115, 244, 649, 1906, 2761, 2878, 2972, 3134 |
| Hpy99I | CGWCG | 2 cut(s) | 221, 269 |
| HpyCH4IV | ACGT | 5 cut(s) | 51, 219, 1940, 2710, 3011 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 329, 1535, 2230, 2503, 3071 |
| HpySE526I | ACGT | 5 cut(s) | 51, 219, 1940, 2710, 3011 |
| Hsp92I | GRCGYC | 1 cut(s) | 3011 |
| HspAI | GCGC | 2 cut(s) | 1750, 2857 |
| KpnI | GGTACC | 1 cut(s) | 848 |
| Ksp22I | TGATCA | 1 cut(s) | 2787 |
| LguI | GCTCTTC | 2 cut(s) | 1787, 3475 |
| LmnI | GCTCC | 9 cut(s) | 91, 760, 1168, 1453, 1499, 2494, 2854, 3348, 3431 |
| Lsp1109I | GCAGC | 6 cut(s) | 181, 1627, 2932, 3061, 3119, 3122 |
| LweI | GCATC | 5 cut(s) | 304, 604, 1099, 1366, 3703 |
| MabI | ACCWGGT | 1 cut(s) | 3799 |
| MaeI | CTAG | 8 cut(s) | 65, 437, 632, 1629, 2135, 3122, 3248, 4524 |
| MaeII | ACGT | 5 cut(s) | 51, 219, 1940, 2710, 3011 |
| MaeIII | GTNAC | 8 cut(s) | 877, 934, 1028, 1300, 1851, 2536, 3321, 3697 |
| MfeI | CAATTG | 1 cut(s) | 4710 |
| MhlI | GDGCHC | 1 cut(s) | 1173 |
| MlsI | TGGCCA | 2 cut(s) | 831, 4761 |
| MluNI | TGGCCA | 2 cut(s) | 831, 4761 |
| MmeI | TCCRAC | 7 cut(s) | 240, 333, 348, 2439, 2580, 3667, 4364 |
| Mox20I | TGGCCA | 2 cut(s) | 831, 4761 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1764, 3258, 4093 |
| MscI | TGGCCA | 2 cut(s) | 831, 4761 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1146, 2489, 2977, 3513, 3747, 4380 |
| Msp20I | TGGCCA | 2 cut(s) | 831, 4761 |
| MspA1I | CMGCKG | 1 cut(s) | 3113 |
| MspCI | CTTAAG | 2 cut(s) | 1847, 4694 |
| MspI | CCGG | 5 cut(s) | 83, 101, 455, 2173, 3947 |
| MunI | CAATTG | 1 cut(s) | 4710 |
| Mva1269I | GAATGC | 1 cut(s) | 587 |
| MvaI | CCWGG | 8 cut(s) | 887, 959, 2147, 3071, 3801, 3870, 4068, 4539 |
| MvnI | CGCG | 2 cut(s) | 234, 2859 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 329, 1535, 2230, 2503, 3071 |
| NciI | CCSGG | 4 cut(s) | 101, 455, 2173, 2174 |
| NcoI | CCATGG | 2 cut(s) | 602, 2244 |
| NlaIV | GGNNCC | 8 cut(s) | 87, 105, 225, 846, 1247, 1593, 3060, 4301 |
| NmuCI | GTSAC | 3 cut(s) | 877, 3321, 3697 |
| NspI | RCATGY | 2 cut(s) | 1448, 2517 |
| PaeI | GCATGC | 2 cut(s) | 1448, 2517 |
| PaeR7I | CTCGAG | 4 cut(s) | 1622, 4043, 4201, 4586 |
| PagI | TCATGA | 4 cut(s) | 2305, 3336, 3673, 3918 |
| PaqCI | CACCTGC | 1 cut(s) | 2522 |
| PciSI | GCTCTTC | 2 cut(s) | 1787, 3475 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 225 |
| PctI | GAATGC | 1 cut(s) | 587 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1764, 3258, 4093 |
| PflFI | GACNNNGTC | 2 cut(s) | 233, 3695 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 958 |
| PfoI | TCCNGGA | 3 cut(s) | 885, 957, 3868 |
| PkrI | GCNGC | 7 cut(s) | 196, 1642, 2947, 3076, 3109, 3112, 4189 |
| Ple19I | CGATCG | 1 cut(s) | 153 |
| Ppu21I | YACGTR | 1 cut(s) | 52 |
| PpuMI | RGGWCCY | 2 cut(s) | 3797, 4299 |
| PsiI | TTATAA | 2 cut(s) | 1320, 4074 |
| Psp124BI | GAGCTC | 1 cut(s) | 1173 |
| Psp5II | RGGWCCY | 2 cut(s) | 3797, 4299 |
| Psp6I | CCWGG | 8 cut(s) | 885, 957, 2145, 3069, 3799, 3868, 4066, 4537 |
| PspGI | CCWGG | 8 cut(s) | 885, 957, 2145, 3069, 3799, 3868, 4066, 4537 |
| PspN4I | GGNNCC | 8 cut(s) | 87, 105, 225, 846, 1247, 1593, 3060, 4301 |
| PspPI | GGNCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| PspPPI | RGGWCCY | 2 cut(s) | 3797, 4299 |
| PspXI | VCTCGAGB | 2 cut(s) | 4201, 4586 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 681, 713 |
| PstI | CTGCAG | 3 cut(s) | 489, 2899, 4336 |
| PstNI | CAGNNNCTG | 3 cut(s) | 958, 3113, 3800 |
| PsyI | GACNNNGTC | 2 cut(s) | 233, 3695 |
| PvuI | CGATCG | 1 cut(s) | 153 |
| PvuII | CAGCTG | 1 cut(s) | 3113 |
| RsaI | GTAC | 9 cut(s) | 798, 846, 930, 2544, 2806, 2959, 3387, 3545, 4425 |
| RsaNI | GTAC | 9 cut(s) | 797, 845, 929, 2543, 2805, 2958, 3386, 3544, 4424 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1146, 2489, 2977, 3513, 3747, 4380 |
| SacI | GAGCTC | 1 cut(s) | 1173 |
| SapI | GCTCTTC | 2 cut(s) | 1787, 3475 |
| SatI | GCNGC | 7 cut(s) | 195, 1641, 2946, 3075, 3108, 3111, 4188 |
| Sau96I | GGNCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| SduI | GDGCHC | 1 cut(s) | 1173 |
| SexAI | ACCWGGT | 1 cut(s) | 3799 |
| SfaNI | GCATC | 5 cut(s) | 304, 604, 1099, 1366, 3703 |
| SfcI | CTRYAG | 4 cut(s) | 485, 567, 2895, 4332 |
| Sfr274I | CTCGAG | 4 cut(s) | 1622, 4043, 4201, 4586 |
| SinI | GGWCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| SlaI | CTCGAG | 4 cut(s) | 1622, 4043, 4201, 4586 |
| SmaI | CCCGGG | 1 cut(s) | 2174 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1146, 2489, 2977, 3513, 3747, 4380 |
| SphI | GCATGC | 2 cut(s) | 1448, 2517 |
| SsiI | CCGC | 9 cut(s) | 232, 323, 589, 1922, 2517, 3063, 4058, 4187, 4642 |
| SspI | AATATT | 1 cut(s) | 1765 |
| SspMI | CTAG | 8 cut(s) | 65, 437, 632, 1629, 2135, 3122, 3248, 4524 |
| SstI | GAGCTC | 1 cut(s) | 1173 |
| StyI | CCWWGG | 5 cut(s) | 64, 602, 2244, 3121, 4436 |
| TaiI | ACGT | 5 cut(s) | 54, 222, 1943, 2713, 3014 |
| TatI | WGTACW | 4 cut(s) | 796, 2804, 3543, 4423 |
| TauI | GCSGC | 1 cut(s) | 4190 |
| TscAI | CASTG | 9 cut(s) | 244, 1414, 1521, 1750, 2515, 3520, 3706, 3858, 4228 |
| TseFI | GTSAC | 3 cut(s) | 877, 3321, 3697 |
| TseI | GCWGC | 6 cut(s) | 194, 1640, 2945, 3074, 3107, 3110 |
| Tsp45I | GTSAC | 3 cut(s) | 877, 3321, 3697 |
| TspGWI | ACGGA | 8 cut(s) | 135, 324, 821, 1275, 3182, 3268, 3444, 4397 |
| TspMI | CCCGGG | 1 cut(s) | 2172 |
| TspRI | CASTG | 9 cut(s) | 244, 1414, 1521, 1750, 2515, 3520, 3706, 3858, 4228 |
| Tth111I | GACNNNGTC | 2 cut(s) | 233, 3695 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 958 |
| Vha464I | CTTAAG | 2 cut(s) | 1847, 4694 |
| VpaK11BI | GGWCC | 6 cut(s) | 2217, 2420, 2878, 3488, 3797, 4299 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1253, 4307 |
| XbaI | TCTAGA | 3 cut(s) | 436, 631, 1628 |
| XceI | RCATGY | 2 cut(s) | 1448, 2517 |
| XhoI | CTCGAG | 4 cut(s) | 1622, 4043, 4201, 4586 |
| XmaI | CCCGGG | 1 cut(s) | 2172 |
| XmaJI | CCTAGG | 2 cut(s) | 64, 3121 |
| XmiI | GTMKAC | 1 cut(s) | 114 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1764, 3258, 4093 |
| XspI | CTAG | 8 cut(s) | 65, 437, 632, 1629, 2135, 3122, 3248, 4524 |
| ZraI | GACGTC | 1 cut(s) | 3012 |