Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000689.1

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Forward (+)

30305 .. 30712

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000689.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggttattgcttctactactgcattagtttgtggtgataaaagtatagaagttgtaggtggtgtttttgatggattaaaccctgatgaaagcaaggtatgtcaggagttgctttatgatggcattgatattcatactggttatcttggagatgcttcaacaaacttgtcaagttgcaatttttcccagccaaaagttaaacagcatatagagaaaaagggtgctgagagggcttcattgctaatcaagtctatgtcacaattcaatgatattgacttcctcttgaatcctcggatgacagctacagatggaaatagtgattgtgcagttgtggaagttgataagattggtccttgtaccaagggagaacaatctcattctatatgtgctcaagtgaatagaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.5

Weight (kDa)

4.9

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	159, 265, 286
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	391
BccI	CCATC	3 cut(s)	65, 113, 302
BfmI	CTRYAG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmsI	GCATC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	290, 360
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	290, 360
BseGI	GGATG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	290, 360
BssT1I	CCWWGG	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	357
CviJI	RGCY	3 cut(s)	190, 233, 302
CviKI_1	RGCY	3 cut(s)	190, 233, 302
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaiI	YATR	9 cut(s)	47, 100, 117, 135, 207, 209, 254, 383, 385
FokI	GGATG	1 cut(s)	307
GsaI	CCCAGC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	286
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	2 cut(s)	104, 283
HpyCH4V	TGCA	3 cut(s)	23, 177, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	225
LpnPI	CCDG	4 cut(s)	89, 96, 123, 200
LweI	GCATC	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	3 cut(s)	178, 260, 403
MnlI	CCTC	3 cut(s)	222, 290, 300
MseI	TTAA	2 cut(s)	77, 198
MwoI	GCNNNNNNNGC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	350
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	77, 198
Sau96I	GGNCC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	3 cut(s)	61, 99, 304
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	178, 260, 403
StyI	CCWWGG	1 cut(s)	360
TasI	AATT	3 cut(s)	178, 260, 403
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	77, 198
Tru9I	TTAA	2 cut(s)	77, 198
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	102, 122, 225
VpaK11BI	GGWCC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.